Supplemental File 1: Circular network topologies comparing connections among subtrees and tree levels
The x-axis features a series of circular networks based on the number of above threshold connections between cells at different levels of the tree in a 7 level (128-cell condition) tree.
Rows in descending order: no difference in tree level (0), difference of one level (1), difference of two levels (2), difference of between 3 and 7 levels (3-7).
Columns from left to right: all connections between cells in the AB sublineage only (intra-AB), all connections between cells in the P1 sublineage only (intra-P1), all connections between cells where one cell is from the AB sublineage and the other cell is from the P1 sublineage (inter-AB-P1).
Supplemental File 2: Heat map of the clique analysis for a 7 level (128-cell condition) tree
Each row represents a unique clique generated from a connectivity matrix of the 7 level tree. The heat map columns represent the number of members in the generated cliques from each octopartite subtree (8 categories). Color coding scheme is presented in the legend to the right of the map.
Supplemental File 3
Supplemental Table 1: Correlations of positional variance between three pairs of spatial dimensions (X-Y, Y-Z, and X-Z) and within differentiation code categories (4, 6, and 7 level).