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Compositional and functional analysis of the gut microbiota of Radix auricularia (Linnaeus) via high-throughput Illumina sequencing

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185 days ago
Compositional and functional analysis of the gut microbiota of Radix auricularia (Linnaeus) via high-throughput Illumina sequencing https://t.co/T2Gr8JQaGl
Compositional and functional analysis of the gut microbiota of Radix auricularia (Linnaeus) via high-throughput Illumina sequencing https://t.co/9tKGynl8BN
Compositional and functional analysis of the gut microbiota of Radix auricularia (Linnaeus) via high-throughput Illumina sequencing https://t.co/YfVxCPJwFO #microbiomebot
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Supplemental Information

The sequence data of all snail samples

A_1, A_2, A_3, A_4 represented adult snail samples, J_1, J_2, J_3, J_4 represented juvenile snails samples.

DOI: 10.7287/peerj.preprints.26512v1/supp-1

Taxa of core bacteria shared by all R. auricularia samples and their relative abundance

the table showed the core bacteria with abundance >0.5%.

DOI: 10.7287/peerj.preprints.26512v1/supp-2

OTUs represent sequence data

DOI: 10.7287/peerj.preprints.26512v1/supp-3

The sequence proportion of class taxon in Proteobacteria

DOI: 10.7287/peerj.preprints.26512v1/supp-4

Venn analysis of shared OTUs and unique OTUs between adult smail (AS) and juvenile snail (JS)

DOI: 10.7287/peerj.preprints.26512v1/supp-5

The abundance of genes related to predicted function at KEGG level 1

DOI: 10.7287/peerj.preprints.26512v1/supp-6

The abundance of genes in the subsystem carbohydrate metabolism system

DOI: 10.7287/peerj.preprints.26512v1/supp-7

The abundance of genes in the subsystem Xenobiotics biodegradation and metabolism

DOI: 10.7287/peerj.preprints.26512v1/supp-8

Additional Information

Competing Interests

The authors declare that they have no competing interests.

Author Contributions

Zongfu Hu conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Xi CHEN performed the experiments, authored or reviewed drafts of the paper, approved the final draft.

Jie CHANG performed the experiments, authored or reviewed drafts of the paper, approved the final draft.

Jianhua YU performed the experiments, contributed reagents/materials/analysis tools, authored or reviewed drafts of the paper, approved the final draft.

Qing TONG analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Shuoguo LI performed the experiments, authored or reviewed drafts of the paper, approved the final draft.

Huaxin NIU conceived and designed the experiments, analyzed the data, contributed reagents/materials/analysis tools, authored or reviewed drafts of the paper, approved the final draft.

Field Study Permissions

The following information was supplied relating to field study approvals (i.e., approving body and any reference numbers):

Research permits were provided by the Forestry Bureau in Tongliao (TL218) and Inner Mongolia University for Nationalities’s Institutional Animal Use and Care Committee (2016-IMUN-029).

Funding

This work was supported by the National Natural Science Foundation of China (No.31360640 and 314360692) and Natural Science Foundation of Inner Monggolia university for nationalities (No.NMDYB1705) . The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.


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