Appendix 1: Library preparation and sequencing of Geonoma sample data
Detailed description of the lab workflow.
Table S1: Biological data info
Reported are the IDs of the Geonoma sample data and the locality and collector information about each sample.
Table S2: Overview of recovered contigs
The table shows which exon locus had a matchign contig in each of the Geonoma samples.
Table S3: Overview of all contigs flagged by the find_traget_contigs function
The document contains a list of all contigs that were flagged by the find_target_contigs function. Listed for each sample are all exons which were excluded because of possible paralogy (more than one matching contig). Further for each sample are listed all contig IDs, which matched multiple exons, which we did not exclude in the example data, as they were mostly representing long contigs spanning across several adjacent exons.
Table S4: Overview of read-coverage for selected exon loci
The table contains an overview of the read-depth information for all 97 exon loci that had an average read-depth of at least 3 reads across all Geonoma samples.