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Supplemental Information

The Bird’s Head region of West Papua, Indonesia

Sampling localities are shown as white circles. The solid black line delineates the border of Teluk Cenderawasih National Park.

DOI: 10.7287/peerj.preprints.25v1/supp-1

Results from Bayesian assignment methods implemented in Structure and BAPS for Pocillopora damicornis

X indicates exclusion from BAPS analysis due to Ng = 6 or less. K = 2 and K = 6 were used as heuristics as described in the text.

DOI: 10.7287/peerj.preprints.25v1/supp-2

Results from Bayesian assignment methods implemented in Structure and BAPS for Seriatopora hystrix

K = 2 and K = 11 were used as heuristics as described in the text.

DOI: 10.7287/peerj.preprints.25v1/supp-3

Genetical Bandwidth Map for Pocillopora damicornis

Green areas indicate regions of genetic homogeneity. White areas indicate putative barriers to larval dispersal and are highlighted with blue dashed lines. The solid black line indicates the borders of Taman Nasional Teluk Cenderawasih.

DOI: 10.7287/peerj.preprints.25v1/supp-4

Genetical Bandwidth Map for Seriatopora hystrix .

Green areas indicate regions of genetic homogeneity. White areas indicate putative barriers to larval dispersal and are highlighted with blue dashed lines. The solid black line indicates the borders of Taman Nasional Teluk Cenderawasih.

DOI: 10.7287/peerj.preprints.25v1/supp-5

Sampling locations in Papua and West Papua, Indonesia

DOI: 10.7287/peerj.preprints.25v1/supp-6

Population statistics for Pocillopora damicornis

Give are the number of samples (N), number of unique genotypes (Ng), M value (M), its variance (M var), and BAPS cluster.

DOI: 10.7287/peerj.preprints.25v1/supp-7

Population statistics for Seriatopora hystrix

Give are the number of samples (N), number of unique genotypes (Ng), M value (M), its variance (M var), and BAPS cluster.

DOI: 10.7287/peerj.preprints.25v1/supp-8

Results from AMOVA for Pocillopora damicornis

DOI: 10.7287/peerj.preprints.25v1/supp-9

Results from AMOVA for Seriatopora hystrix

Four genetic structures are tested. “All samples” indicates that there was no hierarchical structure imposed. '3 regions' tests the significance of a priori geographic structure among Teluk Cenderawasih, Raja Ampat, and Fakfak/Kaimana. Finally, the structures inferred by BAPS and Genetical Bandwidth Mapping (GBM) are tested. Estimators are calculated based on both the infinite alleles model (F statistics) and stepwise mutation model (R statistics) of microsatellite evolution. Negative values are presented, but are effectively equal to zero.

DOI: 10.7287/peerj.preprints.25v1/supp-10

Additional Information

Competing Interests

The authors declare no competing interests.

Author Contributions

Craig J Starger conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, wrote the paper.

Paul H Barber conceived and designed the experiments, contributed reagents/materials/analysis tools, wrote the paper.

Mark V Erdmann conceived and designed the experiments, performed the experiments, contributed reagents/materials/analysis tools, wrote the paper.

Abdul H. A. Toha contributed reagents/materials/analysis tools, wrote the paper.

Andrew C Baker conceived and designed the experiments, contributed reagents/materials/analysis tools, wrote the paper.

Field Study Permissions

The following information was supplied relating to ethical approvals (i.e. approving body and any reference numbers):

The Indonesian Institute of Sciences (LIPI) granted the following permits:

Research permit # 2712/SU/KS/2005

CITES permit # 07218/IV/SATS-LN/2006

Grant Disclosures

The following grant information was disclosed by the authors:

NSF: OCE-0349177

NSF: OCE-0099301

Funding

The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.


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