Metagenomic identification of active methanogens and methanotrophs in serpentinite springs of the Voltri Massif, Italy

Department of Biology, University of Utah, Salt Lake City, Utah, United States
Department of Earth and Ocean Sciences, University of South Carolina, Columbia, South Carolina, United States
Department of Earth Sciences, ETH Zurich, Zurich, Switzerland
School of Oceanography, University of Washington, Seattle, WA, United States
Department of Earth and Environmental Sciences, Michigan State University, East Lansing, Michigan, United States
DOI
10.7287/peerj.preprints.2315v1
Subject Areas
Ecology, Environmental Sciences, Genomics, Marine Biology, Microbiology
Keywords
metagenomics, serpentinization, methanogenesis
Copyright
© 2016 Brazelton et al.
Licence
This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ Preprints) and either DOI or URL of the article must be cited.
Cite this article
Brazelton WJ, Thornton CN, Hyer A, Twing KI, Longino AA, Lang SQ, Lilley MD, Früh-Green GL, Schrenk MO. 2016. Metagenomic identification of active methanogens and methanotrophs in serpentinite springs of the Voltri Massif, Italy. PeerJ Preprints 4:e2315v1

Abstract

The production of hydrogen and methane by geochemical reactions associated with the serpentinization of ultramafic rocks can potentially support subsurface microbial ecosystems independent of the photosynthetic biosphere. Methanogenic and methanotrophic microorganisms are abundant in marine hydrothermal systems heavily influenced by serpentinization, but evidence for methane-cycling archaea and bacteria in continental serpentinite springs has been limited. This report provides metagenomic and experimental evidence for active methanogenesis and methanotrophy by microbial communities in serpentinite springs of the Voltri Massif, Italy. Methanogens belonging to family Methanobacteriaceae and methanotrophic bacteria belonging to family Methylococcaceae were heavily enriched in three ultrabasic springs (pH 12). Metagenomic data also suggest the potential for hydrogen oxidation, hydrogen production, carbon fixation, fermentation, and organic acid metabolism in the ultrabasic springs. The predicted metabolic capabilities are consistent with an active subsurface ecosystem supported by energy and carbon liberated by geochemical reactions within the serpentinite rocks of the Voltri Massif.

Author Comment

This is a submission to PeerJ for review.

Supplemental Information

16S rRNA taxonomy table, bacterial family

DOI: 10.7287/peerj.preprints.2315v1/supp-1

16S rRNA taxonomy table, bacterial sequence

DOI: 10.7287/peerj.preprints.2315v1/supp-2

16S rRNA taxonomy table, archaeal family

DOI: 10.7287/peerj.preprints.2315v1/supp-3

16S rRNA taxonomy table, archaeal sequence

DOI: 10.7287/peerj.preprints.2315v1/supp-4

Metagenome PhyloSift taxonomy table

DOI: 10.7287/peerj.preprints.2315v1/supp-5

Metagenome PhyloSift taxonomy Krona graphs

DOI: 10.7287/peerj.preprints.2315v1/supp-6

Metagenome metabolic pathway abundances

DOI: 10.7287/peerj.preprints.2315v1/supp-7

Metagenome key protein abundances

DOI: 10.7287/peerj.preprints.2315v1/supp-8