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September 2017

Table of Contents - PeerJ Preprints

September 12, 2017 - Version: 2

The Modern Research Data Portal: A design pattern for networked, data-intensive science

Kyle Chard, Eli Dart, Ian Foster, David Shifflett, Steven Tuecke, Jason Williams

https://doi.org/10.7287/peerj.preprints.3194v2

September 12, 2017 - Version: 1

In-silico prediction and modeling of ApxA exotoxins of Actinobacillus pleuropneumoniae: ApxIA, -IIA, -IIIA and -IVA

Myung Whan Oh, Han Sang Yoo

https://doi.org/10.7287/peerj.preprints.3244v1

September 11, 2017 - Version: 1

Epistasis analysis reveals associations between gene variants and bipolar disorder

Carlo Maj, Elena Milanesi, Massimo Gennarelli, Luciano Milanesi, ivan Merelli

https://doi.org/10.7287/peerj.preprints.3242v1

September 11, 2017 - Version: 1

Multi-resolution network modelling of T-cells for precision medicine of multiple sclerosis

Mika Gustafsson

https://doi.org/10.7287/peerj.preprints.3241v1

September 11, 2017 - Version: 1

Towards combining occurrence and abundance distribution models of Great Bustard for conservation: A global research template from Bohai Bay?

Chunrong Mi, Falk Huettmann, Rui Sun, Yumin Guo

https://doi.org/10.7287/peerj.preprints.3240v1

September 8, 2017 - Version: 2

A unique Morrison-Formation sauropod specimen with biconcave dorsal vertebrae

Michael P Taylor, Mathew J Wedel

https://doi.org/10.7287/peerj.preprints.3144v2

September 8, 2017 - Version: 1

Segmented co-infection of tree bark by different fungus

Wenfa Ng

https://doi.org/10.7287/peerj.preprints.3239v1

September 8, 2017 - Version: 1

What is the impact of regulatory guidance and expiry of drug patents on dementia drug prescriptions in England: a trend analysis in the Clinical Practice Research Datalink

Venexia M Walker, Neil M Davies, Patrick G Kehoe, Richard M Martin

https://doi.org/10.7287/peerj.preprints.3238v1

September 8, 2017 - Version: 1

Loss of microbiota depletes cross-reactive Foxp3⁺ Tregs leading to selective immunopathologies

Tirumalai Kamala, David Usharauli

https://doi.org/10.7287/peerj.preprints.3237v1

September 8, 2017 - Version: 1

Best practices for conducting benchmarking in the most comprehensive and reproducible way

Serghei Mangul, Lana S. Martin, Margaret Distler, Eleazar Eskin, Jonathan Flint

https://doi.org/10.7287/peerj.preprints.3236v1

September 6, 2017 - Version: 1

The first virtual cranial endocast of a porolepiform fish and the evolution of the Dipnomorpha

Struan Henderson, Tom Challands, Sam Giles, Jan den Blaauwen

https://doi.org/10.7287/peerj.preprints.3235v1

September 6, 2017 - Version: 4

Can editors save peer review from peer reviewers?

Rafael D'Andrea, James P O'Dwyer

https://doi.org/10.7287/peerj.preprints.3005v4

September 6, 2017 - Version: 1

Origin of a folded protein from an intrinsically disordered ancestral peptide

Hongbo Zhu, Edgardo Sepulveda, Marcus D Hartmann, Manjunatha Kogenaru, Jörg Martin, Andrei N Lupas

https://doi.org/10.7287/peerj.preprints.3234v1

September 6, 2017 - Version: 1

Structure, dynamics and predicted functional ecology of the gut microbiota of the blue (Haliotis fulgens) and yellow (H. corrugata) abalone from Baja California Sur, Mexico

Francesco Cicala, José Alejandro Cisterna-Céliz, James Douglas Moore, Axayácatl Rocha-Olivares

https://doi.org/10.7287/peerj.preprints.3233v1

September 6, 2017 - Version: 1

The dentary of Wareolestes rex and new fossil mammal material from the Middle Jurassic of Skye, Scotland

Elsa Panciroli, Roger B. J. Benson, Stig Walsh

https://doi.org/10.7287/peerj.preprints.3232v1

September 6, 2017 - Version: 1

A case of mistaken identity: ‘Latvius’ obrutus and new dipnoans from the Frasnian of Stolbovo, Russia

Tom Challands, Oleg Lebedev, Matt Friedman, Natasha Krupina

https://doi.org/10.7287/peerj.preprints.3231v1

September 6, 2017 - Version: 1

From trash to treasure: detecting unexpected contamination in unmapped NGS data

llaria Granata, Mara Sangiovanni, Amarinder Singh Thind, Mario Rosario Guarracino

https://doi.org/10.7287/peerj.preprints.3230v1

September 6, 2017 - Version: 1

MTopGO: a tool for module identification in PPI Networks

Danila Vella, Simone Marini, Francesca Vitali, Riccardo Bellazzi

https://doi.org/10.7287/peerj.preprints.3229v1

September 6, 2017 - Version: 1

Predicting comorbidities of epilepsy patients using big data from Electronic Health Records combined with biomedical knowledge

Thomas Gerlach, Chao Lu, Holger Fröhlich

https://doi.org/10.7287/peerj.preprints.3228v1

September 6, 2017 - Version: 1

Foliar microbiome transplants confer disease resistance in a critically-endangered plant

Geoffrey Zahn, Anthony S Amend

https://doi.org/10.7287/peerj.preprints.3226v1

September 5, 2017 - Version: 1

PlantCV v2.0: Image analysis software for high-throughput plant phenotyping

Malia A Gehan, Noah Fahlgren, Arash Abbasi, Jeffrey C Berry, Steven T Callen, Leonardo Chavez, Andrew N Doust, Max J Feldman, Kerrigan B Gilbert, John G Hodge, J Steen Hoyer, Andy Lin, Suxing Liu, César Lizárraga, Argelia Lorence, Michael Miller, Eric Platon, Monica Tessman, Tony Sax

https://doi.org/10.7287/peerj.preprints.3225v1

September 5, 2017 - Version: 1

DeepBlueR: Large-scale epigenomic analysis in R

Markus List, Felipe Albrecht, Christoph Bock, Thomas Lengauer

https://doi.org/10.7287/peerj.preprints.3224v1

September 5, 2017 - Version: 2

Assessment of spectral properties of Apollo 12 landing site

Yann H Chemin, Ian A Crawford, Peter Grindrod, Louise Alexander

https://doi.org/10.7287/peerj.preprints.2124v2

September 5, 2017 - Version: 1

Genome rearrangements and phylogeny reconstruction in Yersinia pestis

Olga O Bochkareva, Natalia O Dranenko, Elena S Ocheredko, German M Kanevsky, Yaroslav N Lozinsky, Vera A Khalaycheva, Irena I Artamonova, Mikhail S Gelfand

https://doi.org/10.7287/peerj.preprints.3223v1

September 4, 2017 - Version: 2

Revised geochronology, correlation, and dinosaur stratigraphic ranges of the Santonian-Maastrichtian (Late Cretaceous) formations of the Western Interior of North America

Denver W Fowler

https://doi.org/10.7287/peerj.preprints.2554v2