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January 2016

Table of Contents - PeerJ Preprints

January 28, 2016 - Version: 1

Probabilistic programming in Python using PyMC3

9,046 downloads

1,074 views

John Salvatier, Thomas V Wiecki, Christopher Fonnesbeck

https://doi.org/10.7287/peerj.preprints.1686v1

January 22, 2016 - Version: 2

Sentieon DNA pipeline for variant detection - Software-only solution, over 20× faster than GATK 3.3 with identical results

1,996 downloads

4,734 views

Jessica A. Weber, Rafael Aldana, Brendan D. Gallagher, Jeremy S. Edwards

https://doi.org/10.7287/peerj.preprints.1672v2

January 21, 2016 - Version: 1

Metagenomic analysis exploring taxonomic and functional diversity of soil microbial communities in Chilean vineyards and surrounding native forests

1,428 downloads

585 views

Luis E Castañeda, Olga Barbosa

https://doi.org/10.7287/peerj.preprints.1661v1

January 6, 2016 - Version: 1

Integration of biochar and chemical fertilizer to enhance quality of soil and wheat crop (Triticum aestivum L.)

1,243 downloads

553 views

Usman Khalid Chaudhry, Salman Shahzad, Muhammad Nadir Naqqash, Abdul Saboor, Sana Yaqoob, Muhammad Salim, Muhammad Khalid

https://doi.org/10.7287/peerj.preprints.1631v1

January 25, 2016 - Version: 4

Problems in using p-curve analysis and text-mining to detect rate of p-hacking and evidential value

757 downloads

5,266 views

Dorothy V Bishop, Paul A Thompson

https://doi.org/10.7287/peerj.preprints.1266v4

January 21, 2016 - Version: 2

Green software engineering: the curse of methodology

712 downloads

599 views

Abram Hindle

https://doi.org/10.7287/peerj.preprints.1470v2

January 13, 2016 - Version: 2

Distributions of p-values smaller than .05 in Psychology: What is going on?

643 downloads

1,694 views

Chris HJ Hartgerink, Robbie CM van Aert, Michèle B Nuijten, Jelte M. Wicherts, Marcel ALM van Assen

https://doi.org/10.7287/peerj.preprints.1642v2

January 23, 2016 - Version: 1

The 2013-2016 West African Ebola virus outbreak: Local contexts and future issues

601 downloads

463 views

Francesco Cecon, Peter F McGrath

https://doi.org/10.7287/peerj.preprints.1678v1

January 6, 2016 - Version: 1

Natural occurrence of the entomopathogenic fungi Beauveria bassiana as a vertically transmitted endophyte of Pinus radiata and its effect on above- and below-ground insect pests

568 downloads

491 views

Marie-Caroline Lefort, Aimee C McKinnon, Tracey L Nelson, Travis R Glare

https://doi.org/10.7287/peerj.preprints.1632v1

January 23, 2016 - Version: 1

The wings before the bird: an evaluation of flapping-based locomotory hypotheses in bird antecedents

540 downloads

1,741 views

T. Alexander Dececchi, Hans CE Larsson, Michael B Habib

https://doi.org/10.7287/peerj.preprints.1676v1

January 13, 2016 - Version: 1

DNA barcoding and taxonomy: dark taxa and dark texts

537 downloads

770 views

Roderic D M Page

https://doi.org/10.7287/peerj.preprints.1649v1

January 6, 2016 - Version: 3

Direct numerical simulation of transitional pulsatile stenotic flow using Lattice Boltzmann Method

457 downloads

461 views

Kartik Jain

https://doi.org/10.7287/peerj.preprints.1548v3

January 21, 2016 - Version: 1

Sequencing and characterization of mitochondrial DNA genome for Brama japonica (Perciformes: Bramidae) with phylogenetic consideration

413 downloads

307 views

Fenfang Chen, Hongyu Ma, Chunyan Ma, Heng Zhang, Mengdi Zhao, Yongyong Meng, Hongqing Wei, Lingbo Ma

https://doi.org/10.7287/peerj.preprints.1667v1

January 21, 2016 - Version: 1

Bayesian multinomial ordered categorical response model for the analysis of length of hospital stay

413 downloads

196 views

Lawrence N Kazembe

https://doi.org/10.7287/peerj.preprints.1663v1

January 22, 2016 - Version: 2

A trait-based approach to bacterial biofilms in soil

381 downloads

511 views

Jay T Lennon, Brent K Lehmkuhl

https://doi.org/10.7287/peerj.preprints.1637v2

January 17, 2016 - Version: 1

Acoustic monitoring indicates a positive relationship between calling frequency and spawning in captive spotted seatrout (Cynoscion nebulosus)

357 downloads

555 views

Eric W Montie, Matt Hoover, Chris Kehrer, Justin Yost, Karl Brenkert, Timothy O'Donnell, Mike R Denson

https://doi.org/10.7287/peerj.preprints.1656v1

January 26, 2016 - Version: 1

The potential effects of climate change on amphibian distribution, range fragmentation and turnover in China

317 downloads

853 views

Ren-Yan Duan, Xiao-Quan Kong, Min-Yi Huang, Sara Varela, Xiang Ji

https://doi.org/10.7287/peerj.preprints.1681v1

January 6, 2016 - Version: 2

Responses of microbial community from tropical pristine coastal soil to crude oil contamination

299 downloads

470 views

Daniel Morais, Victor Pylro, Ian M Clark, Penny R Hirsch, Marcos Tótola

https://doi.org/10.7287/peerj.preprints.1254v2

January 13, 2016 - Version: 2

What doesn’t kill them makes them stronger: An association between elongation factor 1-α overdominance in the sea star Pisaster ochraceus and "sea star wasting disease”

289 downloads

721 views

John P. Wares, Lauren M Schiebelhut

https://doi.org/10.7287/peerj.preprints.1464v2

January 21, 2016 - Version: 1

Preliminary characterization of little brown bats (Myotis lucifugus) immune MHC II DRB alleles using next-generation sequencing

282 downloads

427 views

Jonathan M. Palmer, Leah K. Berkman, Paula E Marquardt, Deahn M. Donner, Michelle A. Jusino, Daniel L. Lindner

https://doi.org/10.7287/peerj.preprints.1662v1

January 27, 2016 - Version: 1

Effect of the Blowflies (Diptera: Calliphoridae) on the size and weight of Mango (Mangifera indica L.)

279 downloads

388 views

Shafqat Saeed, Muhammad Nadir Naqqash, Waqar Jaleel, Qamar Saeed, Fozia Ghouri

https://doi.org/10.7287/peerj.preprints.1683v1

January 28, 2016 - Version: 1

Multiple dimensions of bacterial diversity unrelated to functioning, stability and multifunctionality

275 downloads

955 views

Fabian Roger, Stefan Bertilsson, Silke Langenheder, Omneya Ahmed, Lars Gamfeldt

https://doi.org/10.7287/peerj.preprints.1688v1

January 21, 2016 - Version: 1

A computational analysis of Salt Overly Sensitive 1 homologs in halophytes and glycophytes

264 downloads

304 views

Cherin Kim, Ray Bressan

https://doi.org/10.7287/peerj.preprints.1668v1

January 21, 2016 - Version: 1

Keemei: cloud-based validation of tabular bioinformatics file formats in Google Sheets

259 downloads

577 views

Jai Ram Rideout, John H Chase, Evan Bolyen, Gail Ackermann, Antonio Gonzalez, Rob Knight, J Gregory Caporaso

https://doi.org/10.7287/peerj.preprints.1670v1

January 7, 2016 - Version: 1

DNA barcode data accurately identify higher taxa

255 downloads

860 views

Jonathan A Coddington, Ingi Agnarsson, Ren-Chung Cheng, Klemen Čandek, Amy Driskell, Holger Frick, Matjaž Gregorič, Rok Kostanjšek, Christian Kropf, Matthew Kweskin, Tjaša Lokovšek, Miha Pipan, Nina Vidergar, Matjaž Kuntner

https://doi.org/10.7287/peerj.preprints.1633v1

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