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Supplemental Information

List of scripts and functions currently available in the enveomics collection

For an updated categorized list visit http://enve-omics.ce.gatech.edu/enveomics/docs .

DOI: 10.7287/peerj.preprints.1900v1/supp-1

Conceptual workflow of the TRIBS algorithm applied to phylogenetic distances

The TRIBS (Transformed-space Resampling In Biased Sets) algorithm is described in the main text. The entire set (i.e., phylogenetic space of genomes or genome-derived features) is represented in black and the selected subset for evaluation (i.e., genomes presenting the trait of interest) is represented in burgundy. Median is abbreviated as Med.

DOI: 10.7287/peerj.preprints.1900v1/supp-2

Additional Information

Competing Interests

The authors declare that they have no competing interests.

Author Contributions

Luis M Rodriguez-R conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, wrote the paper, prepared figures and/or tables, reviewed drafts of the paper.

Konstantinos T Konstantinidis conceived and designed the experiments, contributed reagents/materials/analysis tools, reviewed drafts of the paper.

Data Deposition

The following information was supplied regarding data availability:

GitHub, lmrodriguezr/enveomics, https://github.com/lmrodriguezr/enveomics

GitHub, lmrodriguez/enveomics-gui, https://github.com/lmrodriguezr/enveomics-gui

Funding

This work was supported by the United States Department of Energy, Biological and Environmental Research Division (BER), Genomic Science Program [DE-SC0006662, DE-SC0004601]; and the United States National Science Foundation [1241046, 1356288]. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.


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