ANGSD-wrapper
- Published
- Accepted
- Subject Areas
- Bioinformatics, Evolutionary Studies, Genetics, Genomics
- Keywords
- software, population genetics, genotype likelihood
- Copyright
- © 2015 Durvasula et al.
- Licence
- This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ PrePrints) and either DOI or URL of the article must be cited.
- Cite this article
- 2015. ANGSD-wrapper. PeerJ PrePrints 3:e1472v1 https://doi.org/10.7287/peerj.preprints.1472v1
Abstract
High throughput sequencing has changed many aspects of population genetics, molecular ecology, and related fields, affecting both experimental design and data analysis. The software package ANGSD allows users to perform a number of population genetic analyses on high-throughput sequencing data. The package is specifically designed to produce more accurate results for samples with low sequencing depth, but it handles a wide array of sampling and experimental designs and makes use of full genome data. Here we present ANGSD-wrapper, a user-friendly interface to ANGSD. ANGSD-wrapper includes a number of ’wrapper’ scripts that facilitate configuration and execution of multi-step analyses. ANGSD- wrapper also provides interactive graphing of ANGSD results, thus enhancing data exploration. We demonstrate the usefulness of ANGSD-wrapper by analyzing resequencing data from populations of wild and domesticated Oryza. ANGSD-wrapper is freely available from https://github.com/ arundurvasula/angsd- wrapper.
Author Comment
This is a preprint submission to PeerJ.