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Additional Information

Competing Interests

Jeffrey Ross-Ibarra is an Academic Editor for PeerJ .

Author Contributions

Arun Durvasula analyzed the data, contributed reagents/materials/analysis tools, wrote the paper, prepared figures and/or tables, reviewed drafts of the paper.

Paul J Hoffman analyzed the data, contributed reagents/materials/analysis tools, wrote the paper, prepared figures and/or tables, reviewed drafts of the paper.

Tyler V Kent analyzed the data, contributed reagents/materials/analysis tools, wrote the paper, prepared figures and/or tables, reviewed drafts of the paper.

Chaochih Liu analyzed the data, contributed reagents/materials/analysis tools, wrote the paper, prepared figures and/or tables, reviewed drafts of the paper.

Thomas J Y Kono analyzed the data, contributed reagents/materials/analysis tools, wrote the paper, prepared figures and/or tables, reviewed drafts of the paper.

Peter L Morrell analyzed the data, contributed reagents/materials/analysis tools, wrote the paper, prepared figures and/or tables, reviewed drafts of the paper.

Jeffrey Ross-Ibarra analyzed the data, contributed reagents/materials/analysis tools, wrote the paper, prepared figures and/or tables, reviewed drafts of the paper.

Data Deposition

The following information was supplied regarding data availability:

The program and example dataset are available at: https://github.com/mojaveazure/angsd-wrapper

Funding

We acknowledge funding support from the US National Science Foundation (IOS-1238014 to JRI and IOS-1339393 to PLM) and funding from the UC Davis Plant Sciences Department. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.


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