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Michel Dumontier

Summary

My research focuses on the development of computational methods to understand how living systems respond to chemical agents. We use Semantic Web technologies to formally represent and reason about data and services. I serve as a co-chair for the World Wide Web Consortium Semantic Web for Health Care and Life Sciences Interest Group (W3C HCLSIG) and am the Scientific Director for Bio2RDF, a widely recognized open-source project to create and provide linked data for life sciences.

Bioinformatics Computational Science Drugs & Devices

Past or current institution affiliations

Carleton University

Stanford University

Work details

Associate Professor of Medicine

Stanford University

Stanford Center for Biomedical Informatics Research

Carleton University

Websites

January 2, 2018

Biotea: semantics for Pubmed Central

337 downloads

1,858 views

Alexander Garcia, Federico Lopez, Leyla Garcia, Olga Giraldo, Victor Bucheli, Michel Dumontier

https://doi.org/10.7717/peerj.4201 PubMed 29312824

April 24, 2017

Interoperability and FAIRness through a novel combination of Web technologies

8 citations

792 downloads

4,284 views

Mark D. Wilkinson, Ruben Verborgh, Luiz Olavo Bonino da Silva Santos, Tim Clark, Morris A. Swertz, Fleur D.L. Kelpin, Alasdair J.G. Gray, Erik A. Schultes, Erik M. van Mulligen, Paolo Ciccarese, Arnold Kuzniar, Anand Gavai, Mark Thompson, Rajaram Kaliyaperumal, Jerven T. Bolleman, Michel Dumontier

https://doi.org/10.7717/peerj-cs.110

February 13, 2017

Finding melanoma drugs through a probabilistic knowledge graph

6 citations

619 downloads

3,249 views

James P. McCusker, Michel Dumontier, Rui Yan, Sylvia He, Jonathan S. Dordick, Deborah L. McGuinness

https://doi.org/10.7717/peerj-cs.106

August 22, 2016

Decentralized provenance-aware publishing with nanopublications

13 citations

537 downloads

3,557 views

Tobias Kuhn, Christine Chichester, Michael Krauthammer, Núria Queralt-Rosinach, Ruben Verborgh, George Giannakopoulos, Axel-Cyrille Ngonga Ngomo, Raffaele Viglianti, Michel Dumontier

https://doi.org/10.7717/peerj-cs.78

August 16, 2016

The health care and life sciences community profile for dataset descriptions

8 citations

472 downloads

3,264 views

Michel Dumontier, Alasdair J.G. Gray, M. Scott Marshall, Vladimir Alexiev, Peter Ansell, Gary Bader, Joachim Baran, Jerven T. Bolleman, Alison Callahan, José Cruz-Toledo, Pascale Gaudet, Erich A. Gombocz, Alejandra N. Gonzalez-Beltran, Paul Groth, Melissa Haendel, Maori Ito, Simon Jupp, Nick Juty, Toshiaki Katayama, Norio Kobayashi, Kalpana Krishnaswami, Camille Laibe, Nicolas Le Novère, Simon Lin, James Malone, Michael Miller, Christopher J. Mungall, Laurens Rietveld, Sarala M. Wimalaratne, Atsuko Yamaguchi

https://doi.org/10.7717/peerj.2331 PubMed 27602295

May 27, 2015

Achieving human and machine accessibility of cited data in scholarly publications

41 citations

1,207 downloads

14,291 views

Joan Starr, Eleni Castro, Mercè Crosas, Michel Dumontier, Robert R. Downs, Ruth Duerr, Laurel L. Haak, Melissa Haendel, Ivan Herman, Simon Hodson, Joe Hourclé, John Ernest Kratz, Jennifer Lin, Lars Holm Nielsen, Amy Nurnberger, Stefan Proell, Andreas Rauber, Simone Sacchi, Arthur Smith, Mike Taylor, Tim Clark

https://doi.org/10.7717/peerj-cs.1 PubMed 26167542

May 5, 2015

GFVO: the Genomic Feature and Variation Ontology

1 citation

402 downloads

3,465 views

Joachim Baran, Bibi Sehnaaz Begum Durgahee, Karen Eilbeck, Erick Antezana, Robert Hoehndorf, Michel Dumontier

https://doi.org/10.7717/peerj.933 PubMed 26019997

December 17, 2017 - Version: 1

Biotea, semantics for Pubmed Central

177 downloads

552 views

Alexander Garcia, Federico Lopez, Leyla Garcia, Olga Giraldo, Victor Bucheli, Michel Dumontier

https://doi.org/10.7287/peerj.preprints.3469v1

January 9, 2017 - Version: 2

The health care and life sciences community profile for dataset descriptions

199 downloads

984 views

Michel Dumontier, Alasdair J G Gray, M. Scott Marshall, Vladimir Alexiev, Peter Ansell, Gary D Bader, Joachim Baran, Jerven T Bolleman, Alison Callahan, José Cruz-Toledo, Pascale Gaudet, Erich A Gombocz, Alejandra N Gonzalez Beltran, Paul Groth, Melissa Haendel, Maori Ito, Simon Jupp, Nick Juty, Toshiaki Katayama, Norio Kobayashi, Kalpana Krishnaswami, Camille Laibe, Nicolas Le Novère, Simon Lin, James Malone, Michael Miller, Chris Mungall, Laurens Rietveld, Sarala M Wimalaratne, Atsuko Yamaguchi

https://doi.org/10.7287/peerj.preprints.1982v2

January 2, 2017 - Version: 2

Interoperability and FAIRness through a novel combination of Web technologies

732 downloads

2,795 views

Mark D Wilkinson, Ruben Verborgh, Luiz Olavo Bonino da Silva Santos, Tim Clark, Morris A Swertz, Fleur D.L. Kelpin, Alasdair J. G. Gray, Erik A. Schultes, Erik M. van Mulligen, Paolo Ciccarese, Arnold Kuzniar, Anand Gavai, Mark Thompson, Rajaram Kaliyaperumal, Jerven T. Bolleman, Michel Dumontier

https://doi.org/10.7287/peerj.preprints.2522v2

December 8, 2016 - Version: 2

Finding melanoma drugs through a probabilistic knowledge graph

319 downloads

757 views

James P McCusker, Michel Dumontier, Rui Yan, Sylvia He, Jonathan S Dordick, Deborah L McGuinness

https://doi.org/10.7287/peerj.preprints.2007v2

February 19, 2016 - Version: 1

Decentralized provenance-aware publishing with nanopublications

229 downloads

1,068 views

Tobias Kuhn, Christine Chichester, Michael Krauthammer, Núria Queralt-Rosinach, Ruben Verborgh, George Giannakopoulos, Axel-Cyrille Ngonga Ngomo, Raffaele Viglianti, Michel Dumontier

https://doi.org/10.7287/peerj.preprints.1760v1

February 11, 2015 - Version: 4

Achieving human and machine accessibility of cited data in scholarly publications

1,282 downloads

5,246 views

Joan Starr, Eleni Castro, Mercè Crosas, Michel Dumontier, Robert R. Downs, Ruth Duerr, Laurel Haak, Melissa Haendel, Ivan Herman, Simon Hodson, Joe Hourclé, John Ernest Kratz, Jennifer Lin, Lars Holm Nielsen, Amy Nurnberger, Stefan Pröll, Andreas Rauber, Simone Sacchi, Arthur P. Smith, Michael Taylor, Tim Clark

https://doi.org/10.7287/peerj.preprints.697v4