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Matthew Sullivan

Summary

We leverage virus-host model systems in the laboratory to test hypotheses about viral ecology and evolution and virus-host interactions that are derived from data-driven, quantitative inquiry of natural communities.

Bioinformatics Ecology Genomics Microbiology

Past or current institution affiliations

Ohio State University

University of Arizona

Work details

Professor

Ohio State University

June 2015

Microbiology and Civil, Environmental and Geodetic Engineering

Websites

July 4, 2019

Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils

206 downloads

660 views

Gareth Trubl, Simon Roux, Natalie Solonenko, Yueh-Fen Li, Benjamin Bolduc, Josué Rodríguez-Ramos, Emiley A. Eloe-Fadrosh, Virginia I. Rich, Matthew B. Sullivan

https://doi.org/10.7717/peerj.7265

May 9, 2019

Optimizing de novo genome assembly from PCR-amplified metagenomes

1 citation

288 downloads

1,411 views

Simon Roux, Gareth Trubl, Danielle Goudeau, Nandita Nath, Estelle Couradeau, Nathan A. Ahlgren, Yuanchao Zhan, David Marsan, Feng Chen, Jed A. Fuhrman, Trent R. Northen, Matthew B. Sullivan, Virginia I. Rich, Rex R. Malmstrom, Emiley A. Eloe-Fadrosh

https://doi.org/10.7717/peerj.6902 PubMed 31119088

April 25, 2019

Long-read viral metagenomics captures abundant and microdiverse viral populations and their niche-defining genomic islands

3 citations

618 downloads

3,105 views

Joanna Warwick-Dugdale, Natalie Solonenko, Karen Moore, Lauren Chittick, Ann C. Gregory, Michael J. Allen, Matthew B. Sullivan, Ben Temperton

https://doi.org/10.7717/peerj.6800 PubMed 31086738

September 21, 2017

Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversity

36 citations

983 downloads

3,620 views

Simon Roux, Joanne B. Emerson, Emiley A. Eloe-Fadrosh, Matthew B. Sullivan

https://doi.org/10.7717/peerj.3817 PubMed 28948103

June 15, 2017

Putative archaeal viruses from the mesopelagic ocean

14 citations

599 downloads

2,835 views

Dean R. Vik, Simon Roux, Jennifer R. Brum, Ben Bolduc, Joanne B. Emerson, Cory C. Padilla, Frank J. Stewart, Matthew B. Sullivan

https://doi.org/10.7717/peerj.3428 PubMed 28630803

May 3, 2017

vConTACT: an iVirus tool to classify double-stranded DNA viruses that infect Archaea and Bacteria

40 citations

955 downloads

5,116 views

Benjamin Bolduc, Ho Bin Jang, Guilhem Doulcier, Zhi-Qiang You, Simon Roux, Matthew B. Sullivan

https://doi.org/10.7717/peerj.3243 PubMed 28480138

December 8, 2016

Towards quantitative viromics for both double-stranded and single-stranded DNA viruses

50 citations

933 downloads

4,676 views

Simon Roux, Natalie E. Solonenko, Vinh T. Dang, Bonnie T. Poulos, Sarah M. Schwenck, Dawn B. Goldsmith, Maureen L. Coleman, Mya Breitbart, Matthew B. Sullivan

https://doi.org/10.7717/peerj.2777 PubMed 28003936

May 17, 2016

Optimization of viral resuspension methods for carbon-rich soils along a permafrost thaw gradient

9 citations

604 downloads

2,366 views

Gareth Trubl, Natalie Solonenko, Lauren Chittick, Sergei A. Solonenko, Virginia I. Rich, Matthew B. Sullivan

https://doi.org/10.7717/peerj.1999 PubMed 27231649

May 28, 2015

VirSorter: mining viral signal from microbial genomic data

162 citations

2,723 downloads

17,338 views

Simon Roux, Francois Enault, Bonnie L. Hurwitz, Matthew B. Sullivan

https://doi.org/10.7717/peerj.985 PubMed 26038737

April 6, 2019 - Version: 1

Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils

506 downloads

684 views

Gareth Trubl, Simon Roux, Natalie Solonenko, Yueh-Fen Li, Benjamin Bolduc, Josué Rodríguez-Ramos, Emiley A. Eloe-Fadrosh, Virginia I. Rich, Matthew B. Sullivan

https://doi.org/10.7287/peerj.preprints.27640v1

December 28, 2018 - Version: 1

Optimizing de novo genome assembly from PCR-amplified metagenomes

515 downloads

867 views

Simon Roux, Gareth Trubl, Danielle Goudeau, Nandita Nath, Estelle Couradeau, Nathan A Ahlgren, Yuanchao Zhan, David Marsan, Feng Chen, Jed A Fuhrman, Trent R Northen, Matthew B Sullivan, Virginia I Rich, Rex R Malmstrom, Emiley A Eloe-Fadrosh

https://doi.org/10.7287/peerj.preprints.27453v1

June 26, 2017 - Version: 1

Benchmarking viromics: An in silico evaluation of metagenome-enabled estimates of viral community composition and diversity

644 downloads

1,292 views

Simon Roux, Joanne B Emerson, Emiley A Eloe-Fadrosh, Matthew B Sullivan

https://doi.org/10.7287/peerj.preprints.3053v1