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Matthew MacManes
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Articles published in PeerJ
De novo genome assembly of Geosmithia morbida, the causal agent of thousand cankers disease
Improving transcriptome assembly through error correction of high-throughput sequence reads
Preprints
De novo genome assembly of Geosmithia morbida, the causal agent of thousand cankers disease
On the accurate description of social and genetic mating systems
Provided feedback on
Chris et. al., I would consider deemphasizing (e.g. eliminating) N50 as a way to evaluate assembly quality. There is plenty of evidence that maximizing N50 may lead us astray, give...
Transcriptome analyses of Anguillicola crassus from native and novel hosts
If I were reviewing (or reading) this manuscript, I'd want to know some more details about how you did your assembly (flags used in Trinity for instance). Also, were raw reads real...