18 October, 2016
VSEARCH: a versatile open source tool for metagenomics
Biodiversity Bioinformatics Computational Biology Genomics Microbiology
139 citations · 7,293 views · 1,356 downloads
Torbjørn Rognes, Tomáš Flouri, Ben Nichols, Christopher Quince, Frédéric Mahé
19 June, 2014
scikit-image: image processing in Python
Bioinformatics Computational Biology Computational Science Human-Computer Interaction Science and Medical Education
206 citations · 52,549 views · 8,714 downloads
Stéfan van der Walt, Johannes L. Schönberger, Juan Nunez-Iglesias, François Boulogne, Joshua D. Warner, Neil Yager, Emmanuelle Gouillart, Tony Yu
4 March, 2014
Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction
Bioinformatics Genetics Microbiology Mycology Computational Science
217 citations · 17,199 views · 2,573 downloads
Zhian N. Kamvar, Javier F. Tabima, Niklaus J. Grünwald
9 October, 2014
Using observation-level random effects to model overdispersion in count data in ecology and evolution
Ecology Evolutionary Studies Statistics
162 citations · 11,167 views · 2,980 downloads
Xavier A. Harrison
25 September, 2014
Swarm: robust and fast clustering method for amplicon-based studies
Biodiversity Bioinformatics Ecology Microbiology Molecular Biology
115 citations · 10,935 views · 1,591 downloads
Frédéric Mahé, Torbjørn Rognes, Christopher Quince, Colomban de Vargas, Micah Dunthorn
8 October, 2015
Anvi’o: an advanced analysis and visualization platform for ‘omics data
Bioinformatics Biotechnology Computational Biology Genomics Microbiology
70 citations · 13,507 views · 2,195 downloads
A. Murat Eren, Özcan C. Esen, Christopher Quince, Joseph H. Vineis, Hilary G. Morrison, Mitchell L. Sogin, Tom O. Delmont