19 June, 2014
scikit-image: image processing in Python
Bioinformatics Computational Biology Computational Science Human–Computer Interaction Science and Medical Education
165 citations · 45,779 views · 7,737 downloads
Stéfan van der Walt, Johannes L. Schönberger, Juan Nunez-Iglesias, François Boulogne, Joshua D. Warner, Neil Yager, Emmanuelle Gouillart, Tony Yu
27 August, 2015
MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
Bioinformatics Computational Biology Genomics
75 citations · 12,562 views · 2,120 downloads
Dongwan D. Kang, Jeff Froula, Rob Egan, Zhong Wang
4 March, 2014
Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction
Bioinformatics Genetics Microbiology Mycology Computational Science
180 citations · 15,259 views · 2,261 downloads
Zhian N. Kamvar, Javier F. Tabima, Niklaus J. Grünwald
18 October, 2016
VSEARCH: a versatile open source tool for metagenomics
Biodiversity Bioinformatics Computational Biology Genomics Microbiology
53 citations · 4,785 views · 952 downloads
Torbjørn Rognes, Tomáš Flouri, Ben Nichols, Christopher Quince, Frédéric Mahé
9 October, 2014
Using observation-level random effects to model overdispersion in count data in ecology and evolution
Ecology Evolutionary Studies Statistics
117 citations · 9,358 views · 2,634 downloads
Xavier A. Harrison
26 February, 2013
Associations between the human intestinal microbiota, Lactobacillus rhamnosus GG and serum lipids indicated by integrated analysis of high-throughput profiling data
Microbiology Clinical Trials Nutrition
49 citations · 6,232 views · 2,491 downloads
Leo Lahti, Anne Salonen, Riina A. Kekkonen, Jarkko Salojärvi, Jonna Jalanka-Tuovinen, Airi Palva, Matej Orešič, Willem M. de Vos