18 October, 2016
VSEARCH: a versatile open source tool for metagenomics
Biodiversity Bioinformatics Computational Biology Genomics Microbiology
91 citations · 5,852 views · 1,116 downloads
Torbjørn Rognes, Tomáš Flouri, Ben Nichols, Christopher Quince, Frédéric Mahé
9 October, 2014
Using observation-level random effects to model overdispersion in count data in ecology and evolution
Ecology Evolutionary Studies Statistics
137 citations · 10,147 views · 2,805 downloads
Xavier A. Harrison
4 March, 2014
Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction
Bioinformatics Genetics Microbiology Mycology Computational Science
193 citations · 15,978 views · 2,382 downloads
Zhian N. Kamvar, Javier F. Tabima, Niklaus J. Grünwald
19 June, 2014
scikit-image: image processing in Python
Bioinformatics Computational Biology Computational Science Human–Computer Interaction Science and Medical Education
178 citations · 48,451 views · 7,989 downloads
Stéfan van der Walt, Johannes L. Schönberger, Juan Nunez-Iglesias, François Boulogne, Joshua D. Warner, Neil Yager, Emmanuelle Gouillart, Tony Yu
21 August, 2014
Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences
Bioinformatics Ecology Microbiology
112 citations · 14,782 views · 2,999 downloads
Jai Ram Rideout, Yan He, Jose A. Navas-Molina, William A. Walters, Luke K. Ursell, Sean M. Gibbons, John Chase, Daniel McDonald, Antonio Gonzalez, Adam Robbins-Pianka, Jose C. Clemente, Jack A. Gilbert, Susan M. Huse, Hong-Wei Zhou, Rob Knight, J. Gregory Caporaso
25 September, 2014
Swarm: robust and fast clustering method for amplicon-based studies
Biodiversity Bioinformatics Ecology Microbiology Molecular Biology
96 citations · 10,133 views · 1,483 downloads
Frédéric Mahé, Torbjørn Rognes, Christopher Quince, Colomban de Vargas, Micah Dunthorn