18 October, 2016
VSEARCH: a versatile open source tool for metagenomics
Biodiversity Bioinformatics Computational Biology Genomics Microbiology
230 citations · 10,027 views · 1,767 downloads
Torbjørn Rognes, Tomáš Flouri, Ben Nichols, Christopher Quince, Frédéric Mahé
4 March, 2014
Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction
Bioinformatics Genetics Microbiology Mycology Computational Science
279 citations · 19,567 views · 2,993 downloads
Zhian N. Kamvar, Javier F. Tabima, Niklaus J. Grünwald
6 April, 2016
Probabilistic programming in Python using PyMC3
Data Mining and Machine Learning Data Science Scientific Computing and Simulation
50 citations · 25,327 views · 4,217 downloads
John Salvatier, Thomas V. Wiecki, Christopher Fonnesbeck
9 January, 2014
PhyloSift: phylogenetic analysis of genomes and metagenomes
Bioinformatics Computational Biology Evolutionary Studies Genomics Microbiology
199 citations · 25,870 views · 4,603 downloads
Aaron E. Darling, Guillaume Jospin, Eric Lowe, Frederick A. Matsen IV, Holly M. Bik, Jonathan A. Eisen
19 June, 2014
scikit-image: image processing in Python
Bioinformatics Computational Biology Computational Science Human-Computer Interaction Science and Medical Education
243 citations · 59,588 views · 11,335 downloads
Stéfan van der Walt, Johannes L. Schönberger, Juan Nunez-Iglesias, François Boulogne, Joshua D. Warner, Neil Yager, Emmanuelle Gouillart, Tony Yu
28 May, 2015
VirSorter: mining viral signal from microbial genomic data
Bioinformatics Genomics Microbiology Virology
81 citations · 12,094 views · 2,000 downloads
Simon Roux, Francois Enault, Bonnie L. Hurwitz, Matthew B. Sullivan