19 June, 2014
scikit-image: image processing in Python
Bioinformatics Computational Biology Computational Science Human–Computer Interaction Science and Medical Education
150 citations · 43,580 views · 7,549 downloads
Stéfan van der Walt, Johannes L. Schönberger, Juan Nunez-Iglesias, François Boulogne, Joshua D. Warner, Neil Yager, Emmanuelle Gouillart, Tony Yu
21 August, 2014
Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences
Bioinformatics Ecology Microbiology
89 citations · 13,478 views · 2,791 downloads
Jai Ram Rideout, Yan He, Jose A. Navas-Molina, William A. Walters, Luke K. Ursell, Sean M. Gibbons, John Chase, Daniel McDonald, Antonio Gonzalez, Adam Robbins-Pianka, Jose C. Clemente, Jack A. Gilbert, Susan M. Huse, Hong-Wei Zhou, Rob Knight, J. Gregory Caporaso
18 October, 2016
VSEARCH: a versatile open source tool for metagenomics
Biodiversity Bioinformatics Computational Biology Genomics Microbiology
37 citations · 4,156 views · 844 downloads
Torbjørn Rognes, Tomáš Flouri, Ben Nichols, Christopher Quince, Frédéric Mahé
27 February, 2014
System wide analyses have underestimated protein abundances and the importance of transcription in mammals
Bioinformatics Computational Biology
74 citations · 8,567 views · 1,905 downloads
Jingyi Jessica Li, Peter J. Bickel, Mark D. Biggin
4 March, 2014
Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction
Bioinformatics Genetics Microbiology Mycology Computational Science
163 citations · 14,577 views · 2,120 downloads
Zhian N. Kamvar, Javier F. Tabima, Niklaus J. Grünwald
11 March, 2014
Happy software developers solve problems better: psychological measurements in empirical software engineering
Psychiatry and Psychology Human–Computer Interaction Statistics
20 citations · 26,263 views · 1,602 downloads
Daniel Graziotin, Xiaofeng Wang, Pekka Abrahamsson