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Abhishek Kumar
Bronze Contributor
5,015 Points

Contributions by role

Author 200
Preprint Author 70
Reviewer 210
Editor 4,535
Answers 2

Contributions by subject area

Aquaculture, Fisheries and Fish Science
Biochemistry
Evolutionary Studies
Genetics
Genomics
Cell Biology
Medical Genetics
Bioinformatics
Computational Biology
Infectious Diseases
Molecular Biology
Microbiology
Biotechnology
Agricultural Science
Mycology
Mathematical Biology
Nutrition
Ethical Issues
Computational Science
Marine Biology
Immunology
Biodiversity
Biogeography
Conservation Biology
Plant Science
Data Mining and Machine Learning
Ecology
Zoology
Entomology
Orthopedics
Rheumatology
Epidemiology
Global Health
Health Policy
Public Health
Science and Medical Education
Virology
Cardiology
Veterinary Medicine
Spatial and Geographic Information Science
Oncology
Parasitology
Science Policy
Human-Computer Interaction
Anthropology
Developmental Biology
Animal Behavior
Neuroscience
Psychiatry and Psychology
Pharmacology
Food Science and Technology
Taxonomy
Drugs and Devices
Metabolic Sciences
Biophysics

By Q&A topic

Biochemistry
Biophysics
Computational-biology
Bronze Contributor

Abhishek Kumar

PeerJ Author & Reviewer

Summary

Bioinformatics
Genomics

Computational Biology Computational Science Epidemiology Evolutionary Studies Genetics Genomics Medical Genetics Microbiology Mycology Translational Medicine Virology

Editorial Board Member

Past or current institution affiliations

Manipal Academy of Higher Education
Christian-Albrechts-University Kiel

Websites

  • Google Scholar

PeerJ Contributions

  • Articles 2
  • Preprints 2
  • Edited 37
  • Reviewed 5
  • Questions 3
October 13, 2015
Expression of temperature-sensitive ion channel TRPM8 in sperm cells correlates with vertebrate evolution
Rakesh Kumar Majhi, Somdatta Saha, Ashutosh Kumar, Arijit Ghosh, Nirlipta Swain, Luna Goswami, Pratyush Mohapatra, Apratim Maity, Vivek Kumar Sahoo, Abhishek Kumar, Chandan Goswami
https://doi.org/10.7717/peerj.1310 PubMed 26500819
June 16, 2015
Bayesian phylogeny analysis of vertebrate serpins illustrates evolutionary conservation of the intron and indels based six groups classification system from lampreys for ∼500 MY
Abhishek Kumar
https://doi.org/10.7717/peerj.1026 PubMed 26157611
May 26, 2015 - Version: 1
Bayesian phylogeny analysis of vertebrate serpins illustrates evolutionary conservation of the intron and indels based six groups classification system from lampreys for ~500 MY
Abhishek Kumar
https://doi.org/10.7287/peerj.preprints.1126v1
July 21, 2014 - Version: 1
Sperm specific expression of temperature-sensitive ion channel TRPM8 correlates with vertebrate evolution
Rakesh Kumar Majhi, Somdatta Saha, Ashutosh Kumar, Nirlipta Swain, Luna Goswami, Pratyush Mohapatra, Apratim A Maity, Vivek Kumar Sahoo, Abhishek Kumar, Chandan Goswami
https://doi.org/10.7287/peerj.preprints.440v1

Academic Editor on

September 8, 2020
Correlation between obesity and clinicopathological characteristics in patients with papillary thyroid cancer: a study of 1579 cases: a retrospective study
Huijuan Wang, Pingping Wang, Yu Wu, Xiukun Hou, Zechun Peng, Weiwei Yang, Lizhao Guan, Linfei Hu, Jingtai Zhi, Ming Gao, Xiangqian Zheng
https://doi.org/10.7717/peerj.9675 PubMed 33194342
July 17, 2020
Understanding genomic diversity, pan-genome, and evolution of SARS-CoV-2
Arohi Parlikar, Kishan Kalia, Shruti Sinha, Sucheta Patnaik, Neeraj Sharma, Sai Gayatri Vemuri, Gaurav Sharma
https://doi.org/10.7717/peerj.9576 PubMed 32742815
June 3, 2020
Air transportation, population density and temperature predict the spread of COVID-19 in Brazil
Pedro Pequeno, Bruna Mendel, Clarissa Rosa, Mariane Bosholn, Jorge Luiz Souza, Fabricio Baccaro, Reinaldo Barbosa, William Magnusson
https://doi.org/10.7717/peerj.9322 PubMed 32547889
May 26, 2020
Characterization of the bacterial microbiota composition and evolution at different intestinal tract in wild pigs (Sus scrofa ussuricus)
Guangli Yang, Chuanxin Shi, Shuhong Zhang, Yan Liu, Zhiqiang Li, Fengyi Gao, Yanyan Cui, Yongfeng Yan, Ming Li
https://doi.org/10.7717/peerj.9124 PubMed 32518722
February 24, 2020
Genome sequencing of Aspergillus glaucus ‘CCHA’ provides insights into salt-stress adaptation
Wenmin Qiu, Jingen Li, Yi Wei, Feiyu Fan, Jing Jiang, Mingying Liu, Xiaojiao Han, Chaoguang Tian, Shihong Zhang, Renying Zhuo
https://doi.org/10.7717/peerj.8609 PubMed 32140304
October 4, 2019
The clinical significance of collagen family gene expression in esophageal squamous cell carcinoma
Jieling Li, Xiao Wang, Kai Zheng, Ying Liu, Junjun Li, Shaoqi Wang, Kaisheng Liu, Xun Song, Nan Li, Shouxia Xie, Shaoxiang Wang
https://doi.org/10.7717/peerj.7705 PubMed 31598423
January 14, 2019
Worldwide co-occurrence analysis of 17 species of the genus Brachypodium using data mining
Simon Orozco-Arias, Ana María Núñez-Rincón, Reinel Tabares-Soto, Diana López-Álvarez
https://doi.org/10.7717/peerj.6193 PubMed 30656067
March 8, 2017
The complete chloroplast genome sequence of Morus cathayana and Morus multicaulis, and comparative analysis within genus Morus L
Wei Qing Kong, Jin Hong Yang
https://doi.org/10.7717/peerj.3037 PubMed 28286710
February 23, 2017
Retrospective observation of drug susceptibility of Candida strains in the years 1999, 2004, and 2015
Cecylia Łukaszuk, Elżbieta Krajewska-Kułak, Wojciech Kułak
https://doi.org/10.7717/peerj.3038 PubMed 28243540
January 26, 2017
Genomic insight into pathogenicity of dematiaceous fungus Corynespora cassiicola
Hong Keat Looi, Yue Fen Toh, Su Mei Yew, Shiang Ling Na, Yung-Chie Tan, Pei-Sin Chong, Jia-Shiun Khoo, Wai-Yan Yee, Kee Peng Ng, Chee Sian Kuan
https://doi.org/10.7717/peerj.2841 PubMed 28149676
September 20, 2016
A method for high precision sequencing of near full-length 16S rRNA genes on an Illumina MiSeq
Catherine M. Burke, Aaron E. Darling
https://doi.org/10.7717/peerj.2492 PubMed 27688981
July 6, 2016
Gene expression analysis of overwintering mountain pine beetle larvae suggests multiple systems involved in overwintering stress, cold hardiness, and preparation for spring development
Jeanne A. Robert, Tiffany Bonnett, Caitlin Pitt, Luke J. Spooner, Jordie Fraser, Macaire M.S. Yuen, Christopher I. Keeling, Jörg Bohlmann, Dezene P.W. Huber
https://doi.org/10.7717/peerj.2109 PubMed 27441109
June 28, 2016
Collecting reliable clades using the Greedy Strict Consensus Merger
Markus Fleischauer, Sebastian Böcker
https://doi.org/10.7717/peerj.2172 PubMed 27375971
June 27, 2016
Audio segmentation using Flattened Local Trimmed Range for ecological acoustic space analysis
Giovany Vega, Carlos J. Corrada-Bravo, T. Mitchell Aide
https://doi.org/10.7717/peerj-cs.70
May 24, 2016
De novo assembly and characterization of the Chinese three-keeled pond turtle (Mauremys reevesii) transcriptome: presence of longevity-related genes
Huazong Yin, Liuwang Nie, Feifei Zhao, Huaxing Zhou, Haifeng Li, Xianmei Dong, Huanhuan Zhang, Yuqin Wang, Qiong Shi, Jun Li
https://doi.org/10.7717/peerj.2062 PubMed 27257545
May 24, 2016
Sequence/structural analysis of xylem proteome emphasizes pathogenesis-related proteins, chitinases and β-1, 3-glucanases as key players in grapevine defense against Xylella fastidiosa
Sandeep Chakraborty, Rafael Nascimento, Paulo A. Zaini, Hossein Gouran, Basuthkar J. Rao, Luiz R. Goulart, Abhaya M. Dandekar
https://doi.org/10.7717/peerj.2007 PubMed 27257535
May 2, 2016
De novo genome assembly of Geosmithia morbida, the causal agent of thousand cankers disease
Taruna A. Schuelke, Anthony Westbrook, Kirk Broders, Keith Woeste, Matthew D. MacManes
https://doi.org/10.7717/peerj.1952 PubMed 27168971
January 18, 2016
Designing conservation strategies to preserve the genetic diversity of Astragalus edulis Bunge, an endangered species from western Mediterranean region
Julio Peñas, Sara Barrios, Javier Bobo-Pinilla, Juan Lorite, M. Montserrat Martínez-Ortega
https://doi.org/10.7717/peerj.1474 PubMed 26844014
September 10, 2015
The selenium content of SEPP1 versus selenium requirements in vertebrates
Sam Penglase, Kristin Hamre, Ståle Ellingsen
https://doi.org/10.7717/peerj.1244 PubMed 26734501
September 3, 2015
Transcriptional and posttranscriptional regulation of Bacillus sp. CDB3 arsenic-resistance operon ars1
Xuefei Yu, Wei Zheng, Somanath Bhat, J. Andrew Aquilina, Ren Zhang
https://doi.org/10.7717/peerj.1230 PubMed 26355338
August 6, 2015
Comprehensive analyses of genomes, transcriptomes and metabolites of neem tree
Nagesh A. Kuravadi, Vijay Yenagi, Kannan Rangiah, HB Mahesh, Anantharamanan Rajamani, Meghana D. Shirke, Heikham Russiachand, Ramya Malarini Loganathan, Chandana Shankara Lingu, Shilpa Siddappa, Aishwarya Ramamurthy, BN Sathyanarayana, Malali Gowda
https://doi.org/10.7717/peerj.1066 PubMed 26290780
July 9, 2015
The seasonal reproduction number of dengue fever: impacts of climate on transmission
Sittisede Polwiang
https://doi.org/10.7717/peerj.1069 PubMed 26213648
May 21, 2015
Trans-species polymorphism at antimicrobial innate immunity cathelicidin genes of Atlantic cod and related species
Katrín Halldórsdóttir, Einar Árnason
https://doi.org/10.7717/peerj.976 PubMed 26038731
May 14, 2015
Swabs to genomes: a comprehensive workflow
Madison I. Dunitz, Jenna M. Lang, Guillaume Jospin, Aaron E. Darling, Jonathan A. Eisen, David A. Coil
https://doi.org/10.7717/peerj.960 PubMed 26020012
December 16, 2014
Combining physical and virtual contexts through augmented reality: design and evaluation of a prototype using a drug box as a marker for antibiotic training
Sokratis Nifakos, Tanja Tomson, Nabil Zary
https://doi.org/10.7717/peerj.697 PubMed 25548733
December 9, 2014
The microbes we eat: abundance and taxonomy of microbes consumed in a day’s worth of meals for three diet types
Jenna M. Lang, Jonathan A. Eisen, Angela M. Zivkovic
https://doi.org/10.7717/peerj.659 PubMed 25538865
December 2, 2014
Susceptibility to experimental infection of the invertebrate locusts (Schistocerca gregaria) with the apicomplexan parasite Neospora caninum
Mamdowh M. Alkurashi, Sean T. May, Kenny Kong, Jaume Bacardit, David Haig, Hany M. Elsheikha
https://doi.org/10.7717/peerj.674 PubMed 25493211
November 20, 2014
Bacillus anthracis pXO1 plasmid encodes a putative membrane-bound bacteriocin
Agata Perlińska, Marcin Grynberg
https://doi.org/10.7717/peerj.679 PubMed 25426338
November 18, 2014
Genetic reprogramming of human amniotic cells with episomal vectors: neural rosettes as sentinels in candidate selection for validation assays
Patricia G. Wilson, Tiffany Payne
https://doi.org/10.7717/peerj.668 PubMed 25426336
November 13, 2014
Cocaine affects foraging behaviour and biogenic amine modulated behavioural reflexes in honey bees
Eirik Søvik, Naïla Even, Catherine W. Radford, Andrew B. Barron
https://doi.org/10.7717/peerj.662 PubMed 25405075
November 13, 2014
Error correction and diversity analysis of population mixtures determined by NGS
Graham R. Wood, Nigel J. Burroughs, David J. Evans, Eugene V. Ryabov
https://doi.org/10.7717/peerj.645 PubMed 25405074
November 4, 2014
Ancestry-informative markers for African Americans based on the Affymetrix Pan-African genotyping array
Xu Zhang, Wenbo Mu, Cong Liu, Wei Zhang
https://doi.org/10.7717/peerj.660 PubMed 25392759
November 4, 2014
Unipro UGENE NGS pipelines and components for variant calling, RNA-seq and ChIP-seq data analyses
Olga Golosova, Ross Henderson, Yuriy Vaskin, Andrei Gabrielian, German Grekhov, Vijayaraj Nagarajan, Andrew J. Oler, Mariam Quiñones, Darrell Hurt, Mikhail Fursov, Yentram Huyen
https://doi.org/10.7717/peerj.644 PubMed 25392756
October 30, 2014
Horizontal transfer generates genetic variation in an asexual pathogen
Xiaoqiu Huang
https://doi.org/10.7717/peerj.650 PubMed 25374789
September 30, 2014
Massively parallel read mapping on GPUs with the q-group index and PEANUT
Johannes Köster, Sven Rahmann
https://doi.org/10.7717/peerj.606 PubMed 25289191
August 14, 2014
Recent genome reduction of Wolbachia in Drosophila recens targets phage WO and narrows candidates for reproductive parasitism
Jason A. Metcalf, Minhee Jo, Sarah R. Bordenstein, John Jaenike, Seth R. Bordenstein
https://doi.org/10.7717/peerj.529 PubMed 25165636
August 14, 2014
Fast and accurate semantic annotation of bioassays exploiting a hybrid of machine learning and user confirmation
Alex M. Clark, Barry A. Bunin, Nadia K. Litterman, Stephan C. Schürer, Ubbo Visser
https://doi.org/10.7717/peerj.524 PubMed 25165633

Signed reviews submitted for articles published in PeerJ Note that some articles may not have the review itself made public unless authors have made them open as well.

June 12, 2020
Genome-wide characterization of the Zn(II)2Cys6 zinc cluster-encoding gene family in Pleurotus ostreatus and expression analyses of this family during developmental stages and under heat stress
Zhihao Hou, Qiang Chen, Mengran Zhao, Chenyang Huang, Xiangli Wu
https://doi.org/10.7717/peerj.9336 PubMed 32566411
November 24, 2016
Mining SNPs in extracellular vesicular transcriptome of Trypanosoma cruzi: a step closer to early diagnosis of neglected Chagas disease
Pallavi Gaur, Anoop Chaturvedi
https://doi.org/10.7717/peerj.2693 PubMed 27904804
March 10, 2016
Effects of glucose, ethanol and acetic acid on regulation of ADH2 gene from Lachancea fermentati
Norhayati Yaacob, Mohd Shukuri Mohamad Ali, Abu Bakar Salleh, Nor Aini Abdul Rahman
https://doi.org/10.7717/peerj.1751 PubMed 26989608
December 21, 2015
Genome-wide identification of hypoxia-induced enhancer regions
Nick Kamps-Hughes, Jessica L. Preston, Melissa A. Randel, Eric A. Johnson
https://doi.org/10.7717/peerj.1527 PubMed 26713262
November 19, 2015
Splicing Express: a software suite for alternative splicing analysis using next-generation sequencing data
Jose E. Kroll, Jihoon Kim, Lucila Ohno-Machado, Sandro J. de Souza
https://doi.org/10.7717/peerj.1419 PubMed 26618088

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about Computational development of rubromycin-based lead compounds for HIV-1 reverse transcriptase inhibition
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