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Current Issue - October 2025

Table of Contents - PeerJ (Biology Articles)

October 28, 2025

Application of intestinal microbiota in marine fish for assessing the toxicity of typical pollutants: a literature review

Yunzhi Feng, Haolong Xu, Guohua Xu, Dong Sun

https://doi.org/10.7717/peerj.20248

October 27, 2025

FastST: an efficient tool for inferring decomposition and directionality of microbial communities

Joung Min Choi, Xiaowei Wu, Liqing Zhang

https://doi.org/10.7717/peerj.20161

October 24, 2025

Thermal-bias PCR: generation of amplicon libraries without degenerate primer interference

Sean D. Moore

https://doi.org/10.7717/peerj.20241 PubMed 41159003

October 24, 2025

Molecular epidemiology of carbapenem-resistant Escherichia coli in a tertiary hospital located in the Dabie Mountains region, China

Lu Wang, Wanxian Gong, Jie Zhang, Runan Zhang, Ying Jing, Yuanhong Xu

https://doi.org/10.7717/peerj.20188 PubMed 41159002

October 23, 2025

Taxonomic identification, genomic analysis, and optimized chromium(VI) bioreduction by Microbacterium triticisoli sp. nov. M28^T

Yu Qing, Jiewei Tian, Zhenhua Ma, Miao Tang, Xiufeng Long

https://doi.org/10.7717/peerj.20192 PubMed 41146992

October 17, 2025

Prediction of sporulating Firmicutes from uncultured gut microbiota using SpoMAG, an ensemble learning tool

Douglas Terra Machado, Otávio José Bernardes Brustolini, Ellen dos Santos Corrêa, Ana Tereza Ribeiro Vasconcelos

https://doi.org/10.7717/peerj.20232 PubMed 41122237

October 16, 2025

Microbiological and clinical characteristics of hypervirulent Klebsiella pneumoniae isolated from patients in tertiary centers: a retrospective study

Aimi Khairuddin, Nik Mohd Noor Nik Zuraina, Nur Syafiqah Mohamad Nasir, Wei Chuan Chua, Hamimi Salihah Abdul Halim, Wardah Yusof, Azura Hussin, Chan Yean Yean, Siti Asma’ Hassan

https://doi.org/10.7717/peerj.20198 PubMed 41116789

October 15, 2025

Comparative analysis of fecal DNA viromes in Large-billed crows and Northern ravens reveals diverse viral profiles

Yonggang Dong, Sitong Fan, Shunfu He, Wenxin Zhao, Zhuoma Lancuo, Kirill Sharshov, Ying Li, Wen Wang

https://doi.org/10.7717/peerj.20170 PubMed 41112778

October 13, 2025

Modulation of carbon-to-nitrogen ratio shapes the microbial ecology in a methanol-fed recirculating marine denitrifying reactor

Livie Lestin, Richard Villemur

https://doi.org/10.7717/peerj.20129 PubMed 41112761

October 13, 2025

Dynamics of the hindgut microbiota of the Japanese honey bees (Apis cerana japonica) throughout the overwintering period

Akihiko Suzuki, Shumpei Hisamoto, Yoshiko Sakamoto

https://doi.org/10.7717/peerj.20050 PubMed 41112753

October 10, 2025

Antimicrobial activity of Andrographis paniculata intimate wash and commercial formulations against vaginal pathogens using the broth microdilution method

Nur Rina Alissa Razian, Tuan Noorkorina Tuan Kub, Nurdini Afiqah Suhaimi, Tuan Nadrah Naim Tuan Ismail, Muhamad Alojid Anis Amiera, Gayus Sale Dafur, Fatmawati Lambuk, Rohimah Mohamud, Ramlah Kadir, Norzila Ismail, Norhayati Yusop

https://doi.org/10.7717/peerj.20144 PubMed 41089258

October 10, 2025

Contrasting microbial assembly patterns in the woody endosphere of hybrid and non-hybrid Populus trees

Kyle R. Grant, Steven W. Kembel, Sachin Naik, Selvadurai Dayanandan

https://doi.org/10.7717/peerj.20073 PubMed 41089252

October 7, 2025

Geology correlates with gut microbial community composition in the Mountainsnails (Oreohelicidae: Oreohelix)

Ian M. Oiler, T. Mason Linscott, Christine E. Parent

https://doi.org/10.7717/peerj.20080 PubMed 41081102

October 6, 2025

Soil storage temperature and air-drying did not significantly change bacterial taxa in the short-term

Mingming Du, Peipei Xue, Budiman Minasny

https://doi.org/10.7717/peerj.20162 PubMed 41081088

October 6, 2025

Factors influencing compliance with endoscopy final rinsing water standards: a study in a tertiary hospital setting

Yuhua Yuan, Lihong Ye, Tianyi Lu, Baihuan Feng, Jin Zhao

https://doi.org/10.7717/peerj.20134 PubMed 41081099

October 6, 2025

Oropharyngeal microbiome dysbiosis in esophageal squamous cell carcinoma: taxonomic shifts, metabolic reprogramming, and geographic disparities in a high-incidence cohort

Ying Liu, Erman Wu, Fang Cheng, Meng Zhang, Qian Rou, Zinati Nuertai, Maorong Xu, Shanshan Xu, Minghui Li, Lei Zhang, Aheli Nasiroula

https://doi.org/10.7717/peerj.20009 PubMed 41081109

October 3, 2025

Influence of organic, synthetic and biofertilizers on the diversity of cassava rhizosphere microbiome in Northeastern Thailand

Suthasinee Somyong, Wuttichai Mhuantong, Phakamas Phetchawang, Derrick Keith Thompson, Ornprapa Thepsilvisut, Wirulda Pootakham

https://doi.org/10.7717/peerj.20085 PubMed 41059409

October 2, 2025

Development and application of a CRISPR/Cas12a-based reverse transcription–recombinase polymerase amplification assay with lateral flow dipstick and fluorescence detection for Getah virus

Boyang Xia, Ziyan Wang, Tiantian Fei, Yueyu Ma, Yaxi Guo, Dongliang Fei, Xiuwei Shu, Gang Zhao, Mingxiao Ma, Hongxia Yuan

https://doi.org/10.7717/peerj.20119 PubMed 41054568

October 1, 2025

Rhodelphis edaphicus sp. nov.—a new lineage of predatory archaeplastids from agricultural soil

Artem O. Belyaev, Dmitry G. Zagumyonnyi, Elena A. Gerasimova, German A. Sozonov, Denis V. Tikhonenkov

https://doi.org/10.7717/peerj.20071 PubMed 41048393

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