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February 2024

Table of Contents - PeerJ (Biology Articles)

February 26, 2024

TICI: a taxon-independent community index for eDNA-based ecological health assessment

Shaun P. Wilkinson, Amy A. Gault, Susan A. Welsh, Joshua P. Smith, Bruno O. David, Andy S. Hicks, Daniel R. Fake, Alastair M. Suren, Megan R. Shaffer, Simon N. Jarman, Michael Bunce

https://doi.org/10.7717/peerj.16963 PubMed 38426140

February 1, 2024

In silico and in vitro evaluation of the anti-virulence potential of patuletin, a natural methoxy flavone, against Pseudomonas aeruginosa

Ahmed Metwaly, Moustafa M. Saleh, Aisha Alsfouk, Ibrahim M. Ibrahim, Muhamad Abd-Elraouf, Eslam Elkaeed, Hazem Elkady, Ibrahim Eissa

https://doi.org/10.7717/peerj.16826 PubMed 38313021

February 26, 2024

How to account for behavioral states in step-selection analysis: a model comparison

Jennifer Pohle, Johannes Signer, Jana A. Eccard, Melanie Dammhahn, Ulrike E. Schlägel

https://doi.org/10.7717/peerj.16509 PubMed 38426131

February 21, 2024

MX1 and UBE2L6 are potential metaflammation gene targets in both diabetes and atherosclerosis

Guisheng Wang, Rongrong Hua, Xiaoxia Chen, Xucheng He, Yao Dingming, Hua Chen, Buhuan Zhang, Yuru Dong, Muqing Liu, Jiaxiong Liu, Ting Liu, Jingwei Zhao, Yu Qiong Zhao, Li Qiao

https://doi.org/10.7717/peerj.16975 PubMed 38406276

February 28, 2024

triact package for R: analyzing the lying behavior of cows from accelerometer data

Michael Simmler, Stijn P. Brouwers

https://doi.org/10.7717/peerj.17036 PubMed 38436021

February 29, 2024

Prognostic value of RNA methylation-related genes in gastric adenocarcinoma based on bioinformatics

Xionghui He, Xiang Chen, Changcheng Yang, Wei Wang, Hening Sun, Junjie Wang, Jincheng Fu, Huaying Dong

https://doi.org/10.7717/peerj.16951 PubMed 38436027

February 21, 2024

Identification of quantitative trait loci (QTLs) regulating leaf SPAD value and trichome density in mungbean (Vigna radiata L.) using genotyping-by-sequencing (GBS) approach

Nikki Kumari, Gyan Prakash Mishra, Harsh Kumar Dikshit, Soma Gupta, Anirban Roy, Subodh Kumar Sinha, Dwijesh C. Mishra, Shouvik Das, Ranjeet R. Kumar, Ramakrishnan Madhavan Nair, Muraleedhar Aski

https://doi.org/10.7717/peerj.16722 PubMed 38406271

February 29, 2024

Genome-wide identification and expression analysis of the MADS gene family in sweet orange (Citrus sinensis) infested with pathogenic bacteria

Xiuyao Yang, Mengjie Zhang, Dengxian Xi, Tuo Yin, Ling Zhu, Xiujia Yang, Xianyan Zhou, Hanyao Zhang, Xiaozhen Liu

https://doi.org/10.7717/peerj.17001 PubMed 38436028

February 9, 2024

Study on pyroptosis-related genes Casp8, Gsdmd and Trem2 in mice with cerebral infarction

Shunli Liang, Linsheng Xu, Xilin Xin, Rongbo Zhang, You Wu

https://doi.org/10.7717/peerj.16818 PubMed 38348100

February 29, 2024

Genome-wide identification and characterization of FAD family genes in barley

TingTing Cao, QingWei Du, RongChao Ge, RuiFen Li

https://doi.org/10.7717/peerj.16812 PubMed 38436034

February 13, 2024

Expression patterns of E2Fs identify tumor microenvironment features in human gastric cancer

Fanni Li, Jun Yan, Jing Leng, Tianyu Yu, Huayou Zhou, Chang Liu, Wenbo Huang, Qi Sun, Wei Zhao

https://doi.org/10.7717/peerj.16911 PubMed 38371373

February 2, 2024

Novel application of the ferroptosis-related genes risk model associated with disulfidptosis in hepatocellular carcinoma prognosis and immune infiltration

Jiayan Wei, Jinsong Wang, Xinyi Chen, Li Zhang, Min Peng

https://doi.org/10.7717/peerj.16819 PubMed 38317842

February 29, 2024

Construction and validation of m6A-related diagnostic model for psoriasis

Jing Liu, Youlin Wang, Yu Sheng, Limin Cai, Yongchen Wang

https://doi.org/10.7717/peerj.17027 PubMed 38436011

February 20, 2024

A novel peroxisome-related gene signature predicts clinical prognosis and is associated with immune microenvironment in low-grade glioma

Dandan Gao, Qiangyi Zhou, Dianqi Hou, Xiaoqing Zhang, Yiqin Ge, Qingwei Zhu, Jian Yin, Xiangqian Qi, Yaohua Liu, Meiqing Lou, Li Zhou, Yunke Bi

https://doi.org/10.7717/peerj.16874 PubMed 38406287

February 26, 2024

Genome-wide association studies reveal stable loci for wheat grain size under different sowing dates

Yi Hong, Mengna Zhang, Zechen Yuan, Juan Zhu, Chao Lv, Baojian Guo, Feifei Wang, Rugen Xu

https://doi.org/10.7717/peerj.16984 PubMed 38426132

February 23, 2024

Predicting early-onset COPD risk in adults aged 20–50 using electronic health records and machine learning

Guanglei Liu, Jiani Hu, Jianzhe Yang, Jie Song

https://doi.org/10.7717/peerj.16950 PubMed 38410800

February 29, 2024

Co-differential genes between DKD and aging: implications for a diagnostic model of DKD

Hongxuan Du, Kaiying He, Jing Zhao, Qicai You, Xiaochun Zhou, Jianqin Wang

https://doi.org/10.7717/peerj.17046 PubMed 38435999

February 8, 2024

Two new species of Erythroneurini (Hemiptera, Cicadellidae, Typhlocybinae) from southern China based on morphology and complete mitogenomes

Ni Zhang, Jinqiu Wang, Tianyi Pu, Can Li, Yuehua Song

https://doi.org/10.7717/peerj.16853 PubMed 38344292

February 26, 2024

moSCminer: a cell subtype classification framework based on the attention neural network integrating the single-cell multi-omics dataset on the cloud

Joung Min Choi, Chaelin Park, Heejoon Chae

https://doi.org/10.7717/peerj.17006 PubMed 38426141

February 29, 2024

Research and experimental verification on the mechanisms of cellular senescence in triple-negative breast cancer

Tengfei Cao, Mengjie Huang, Xinyue Huang, Tian Tang

https://doi.org/10.7717/peerj.16935 PubMed 38435998

February 28, 2024

Treemendous: an R package for integrating taxonomic information across backbones

Felix Specker, Andrea Paz, Thomas W. Crowther, Daniel S. Maynard

https://doi.org/10.7717/peerj.16896 PubMed 38436026

February 26, 2024

Identification and immunoinfiltration analysis of key genes in ulcerative colitis using WGCNA

Siyi Ni, Yingchao Liu, Jihong Zhong, Yan Shen

https://doi.org/10.7717/peerj.16921 PubMed 38426148

February 29, 2024

Regulation of soldier caste differentiation by microRNAs in Formosan subterranean termite (Coptotermes formosanus Shiraki)

He Du, Runmei Huang, Da-Song Chen, Tianyong Zhuang, Xueyi Huang, Huan Zhang, Zhiqiang Li

https://doi.org/10.7717/peerj.16843 PubMed 38436016

February 8, 2024

Data-driven detection of age-related arbitrary monotonic changes in single-cell gene expression distributions

Jian Hao Cheng, Daigo Okada

https://doi.org/10.7717/peerj.16851 PubMed 38344300

February 22, 2024

Color components determination and full-length comparative transcriptomic analyses reveal the potential mechanism of carotenoid synthesis during Paphiopedilum armeniacum flowering

Yiwei Bai, Jiping Ma, Yanjun Ma, Yanting Chang, Wenbo Zhang, Yayun Deng, Na Zhang, Xue Zhang, Keke Fan, Xiaomeng Hu, Shuhua Wang, Zehui Jiang, Tao Hu

https://doi.org/10.7717/peerj.16914 PubMed 38406281

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