January 2019

Table of Contents - PeerJ (Biology Articles)

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Descriptive anatomy of the largest known specimen of Protoichthyosaurus prostaxalis

Three-dimensional skull of BMT 1955.G35.1, Protoichthyosaurus prostaxalis.

January 8, 2019

Descriptive anatomy of the largest known specimen of Protoichthyosaurus prostaxalis

Representing one of the first times that medical imaging and three-dimensional reconstruction methods have been applied to a large skull of a marine reptile, researchers describe the partial skeleton of a large ichthyosaur from the Lower Jurassic of Warwickshire, England. The unusual three-dimensional preservation of the specimen permitted computed tomography (CT) scanning of individual braincase elements as well as the entire reassembled skull.

- read article

January 9, 2019
The gut microbiome correlates with conspecific aggression in a small population of rescued dogs (Canis familiaris)
2 citations
1,127 downloads
9,947 views
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animal-behavior
bioinformatics
microbiology
https://doi.org/10.7717/peerj.6103 PubMed 30643689
January 22, 2019
Antimicrobial susceptibility and virulence genes of clinical and environmental isolates of Pseudomonas aeruginosa
7 citations
462 downloads
1,849 views
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microbiology
https://doi.org/10.7717/peerj.6217 PubMed 30697478
January 25, 2019
Isolation of wheat bran-colonizing and metabolizing species from the human fecal microbiota
2 citations
485 downloads
1,837 views
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microbiology
molecular-biology
https://doi.org/10.7717/peerj.6293 PubMed 30701133
January 4, 2019
Using the wax moth larva Galleria mellonella infection model to detect emerging bacterial pathogens
3 citations
516 downloads
1,746 views
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microbiology
infectious-diseases
environmental-contamination-and-remediation
environmental-impacts
https://doi.org/10.7717/peerj.6150 PubMed 30631644
January 14, 2019
Comparative genomics of 16 Microbacterium spp. that tolerate multiple heavy metals and antibiotics
2 citations
423 downloads
1,610 views
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genomics
microbiology
biogeochemistry
environmental-contamination-and-remediation
https://doi.org/10.7717/peerj.6258 PubMed 30671291
January 30, 2019
Kelpie: generating full-length ‘amplicons’ from whole-metagenome datasets
1 citation
394 downloads
1,596 views
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bioinformatics
ecology
genomics
microbiology
https://doi.org/10.7717/peerj.6174 PubMed 30723610
January 7, 2019
Intestinal parasitic infection alters bacterial gut microbiota in children
4 citations
648 downloads
1,520 views
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bioinformatics
microbiology
parasitology
infectious-diseases
pediatrics
https://doi.org/10.7717/peerj.6200 PubMed 30643702
January 9, 2019
Fluoxetine-induced alteration of murine gut microbial community structure: evidence for a microbial endocrinology-based mechanism of action responsible for fluoxetine-induced side effects
7 citations
412 downloads
1,438 views
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microbiology
neuroscience
psychiatry-and-psychology
https://doi.org/10.7717/peerj.6199 PubMed 30643701
January 28, 2019
Gastric Helicobacter pylori infection perturbs human oral microbiota
316 downloads
1,419 views
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biodiversity
bioinformatics
microbiology
https://doi.org/10.7717/peerj.6336 PubMed 30713820
January 3, 2019
Polyphasic evaluation of key cyanobacteria in biocrusts from the most arid region in Europe
4 citations
299 downloads
1,270 views
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biodiversity
microbiology
soil-science
https://doi.org/10.7717/peerj.6169 PubMed 30627491
January 11, 2019
Effects of Trichoderma seedling treatment with System of Rice Intensification management and with conventional management of transplanted rice
3 citations
654 downloads
1,264 views
,
agricultural-science
microbiology
mycology
soil-science
food-water-and-energy-nexus
https://doi.org/10.7717/peerj.5877 PubMed 30693151
January 25, 2019
Increased tooth brushing frequency is associated with reduced gingival pocket bacterial diversity in patients with intracranial aneurysms
1 citation
214 downloads
1,261 views
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bioinformatics
microbiology
dentistry
https://doi.org/10.7717/peerj.6316 PubMed 30701137
January 11, 2019
The effects of afforestation on soil bacterial communities in temperate grassland are modulated by soil chemical properties
1 citation
322 downloads
1,255 views
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agricultural-science
conservation-biology
ecology
microbiology
forestry
https://doi.org/10.7717/peerj.6147 PubMed 30648012
January 4, 2019
Long-term effects of straw and straw-derived biochar on soil aggregation and fungal community in a rice–wheat rotation system
1 citation
618 downloads
1,233 views
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ecology
microbiology
https://doi.org/10.7717/peerj.6171 PubMed 30631646
January 14, 2019
Identification and characterization of capsule depolymerase Dpo48 from Acinetobacter baumannii phage IME200
4 citations
378 downloads
1,217 views
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microbiology
molecular-biology
virology
https://doi.org/10.7717/peerj.6173 PubMed 30656071
January 7, 2019
Diversity analysis of the rhizospheric and endophytic bacterial communities of Senecio vulgaris L. (Asteraceae) in an invasive range
409 downloads
1,193 views
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biodiversity
ecology
microbiology
plant-science
https://doi.org/10.7717/peerj.6162 PubMed 30643678
January 24, 2019
Prioritizing bona fide bacterial small RNAs with machine learning classifiers
1 citation
305 downloads
1,116 views
,
bioinformatics
microbiology
data-mining-and-machine-learning
https://doi.org/10.7717/peerj.6304 PubMed 30697489
January 9, 2019
Amelioration of drought effects in wheat and cucumber by the combined application of super absorbent polymer and potential biofertilizer
3 citations
510 downloads
1,105 views
, , ,
agricultural-science
biodiversity
microbiology
plant-science
soil-science
https://doi.org/10.7717/peerj.6073 PubMed 30643688
January 11, 2019
Impact of inter- and intra-individual variation, sample storage and sampling fraction on human stool microbial community profiles
5 citations
330 downloads
1,089 views
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microbiology
gastroenterology-and-hepatology
public-health
https://doi.org/10.7717/peerj.6172 PubMed 30648014
January 9, 2019
A public database for the new MLST scheme for Treponema pallidum subsp. pallidum: surveillance and epidemiology of the causative agent of syphilis
3 citations
294 downloads
1,085 views
, , ,
microbiology
epidemiology
infectious-diseases
https://doi.org/10.7717/peerj.6182 PubMed 30643682
January 16, 2019
Putatively asexual chrysophytes have meiotic genes: evidence from transcriptomic data
4 citations
162 downloads
1,065 views
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biodiversity
evolutionary-studies
microbiology
https://doi.org/10.7717/peerj.5894 PubMed 30671284
January 3, 2019
Analysis of the complete genome sequence of a marine-derived strain Streptomyces sp. S063 CGMCC 14582 reveals its biosynthetic potential to produce novel anti-complement agents and peptides
360 downloads
1,058 views
, , , ,
biochemistry
genomics
microbiology
https://doi.org/10.7717/peerj.6122 PubMed 30627488
January 14, 2019
Global genomic similarity and core genome sequence diversity of the Streptococcus genus as a toolkit to identify closely related bacterial species in complex environments
1 citation
365 downloads
1,025 views
, , ,
biodiversity
bioinformatics
genomics
microbiology
molecular-biology
https://doi.org/10.7717/peerj.6233 PubMed 30656069
January 9, 2019
Microbiota variations in Culex nigripalpus disease vector mosquito of West Nile virus and Saint Louis Encephalitis from different geographic origins
3 citations
326 downloads
919 views
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ecology
entomology
microbiology
infectious-diseases
public-health
https://doi.org/10.7717/peerj.6168 PubMed 30643680
January 11, 2019
Differential expression of the glucose transporter gene glcH in response to glucose and light in marine picocyanobacteria
166 downloads
845 views
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ecology
marine-biology
microbiology
molecular-biology
biological-oceanography
https://doi.org/10.7717/peerj.6248 PubMed 30648008
Descriptive anatomy of the largest known specimen of Protoichthyosaurus prostaxalis

Three-dimensional skull of BMT 1955.G35.1, Protoichthyosaurus prostaxalis.

January 8, 2019

Descriptive anatomy of the largest known specimen of Protoichthyosaurus prostaxalis

Representing one of the first times that medical imaging and three-dimensional reconstruction methods have been applied to a large skull of a marine reptile, researchers describe the partial skeleton of a large ichthyosaur from the Lower Jurassic of Warwickshire, England. The unusual three-dimensional preservation of the specimen permitted computed tomography (CT) scanning of individual braincase elements as well as the entire reassembled skull.

- read article

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