September 2017

Table of Contents - PeerJ (Biology Articles)

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bioinformatics
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Automated classification of tropical shrub species

Leaf samples

September 12, 2017

Automated classification of tropical shrub species

Researchers have developed a hybrid ‘leaf shape’ and machine learning approach to build an automated identification system for tropical shrubs.

- read article

September 21, 2017
Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversity
97 citations
1,612 downloads
5,790 views
, , ,
bioinformatics
ecology
genomics
microbiology
https://doi.org/10.7717/peerj.3817 PubMed 28948103
September 1, 2017
A practical guide to build de-novo assemblies for single tissues of non-model organisms: the example of a Neotropical frog
7 citations
723 downloads
4,053 views
, , , , , ,
bioinformatics
evolutionary-studies
genomics
molecular-biology
zoology
https://doi.org/10.7717/peerj.3702 PubMed 28879061
September 11, 2017
Genome-wide identification of the MADS-box transcription factor family in pear (Pyrus bretschneideri) reveals evolution and functional divergence
13 citations
779 downloads
3,637 views
, , , , , , ,
bioinformatics
genomics
plant-science
https://doi.org/10.7717/peerj.3776 PubMed 28924499
September 12, 2017
Automated classification of tropical shrub species: a hybrid of leaf shape and machine learning approach
8 citations
929 downloads
3,527 views
, , , ,
bioinformatics
computational-biology
plant-science
https://doi.org/10.7717/peerj.3792 PubMed 28924506
September 26, 2017
Ananke: temporal clustering reveals ecological dynamics of microbial communities
12 citations
603 downloads
3,311 views
, , , ,
bioinformatics
ecology
microbiology
computational-science
https://doi.org/10.7717/peerj.3812 PubMed 28966891
September 7, 2017
MetaCRAST: reference-guided extraction of CRISPR spacers from unassembled metagenomes
8 citations
499 downloads
3,238 views
,
bioinformatics
computational-biology
ecology
genomics
microbiology
https://doi.org/10.7717/peerj.3788 PubMed 28894651
September 28, 2017
Predicting stimulation-dependent enhancer-promoter interactions from ChIP-Seq time course data
7 citations
772 downloads
3,157 views
, , , , , , , ,
bioinformatics
computational-biology
genomics
https://doi.org/10.7717/peerj.3742 PubMed 28970965
September 15, 2017
Fish Ontology framework for taxonomy-based fish recognition
5 citations
1,113 downloads
2,787 views
, , , , ,
aquaculture-fisheries-and-fish-science
bioinformatics
computational-science
https://doi.org/10.7717/peerj.3811 PubMed 28929028
September 19, 2017
Genome-wide identification and characterization of aquaporin gene family in Beta vulgaris
21 citations
747 downloads
2,709 views
, , , ,
agricultural-science
bioinformatics
genomics
plant-science
https://doi.org/10.7717/peerj.3747 PubMed 28948097
September 18, 2017
The complete chloroplast genome of Cinnamomum camphora and its comparison with related Lauraceae species
26 citations
854 downloads
2,354 views
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bioinformatics
conservation-biology
genetics
molecular-biology
plant-science
https://doi.org/10.7717/peerj.3820 PubMed 28948105
September 27, 2017
Estimating the age of Heliconius butterflies from calibrated photographs
1 citation
458 downloads
2,284 views
, , ,
animal-behavior
bioinformatics
ecology
entomology
zoology
https://doi.org/10.7717/peerj.3821 PubMed 28970967
September 12, 2017
Challenging a bioinformatic tool’s ability to detect microbial contaminants using in silico whole genome sequencing data
6 citations
526 downloads
1,976 views
, , ,
bioinformatics
genomics
microbiology
https://doi.org/10.7717/peerj.3729 PubMed 28924496
September 15, 2017
Genomic analysis of P elements in natural populations of Drosophila melanogaster
10 citations
419 downloads
1,974 views
, , , ,
bioinformatics
evolutionary-studies
genetics
genomics
https://doi.org/10.7717/peerj.3824 PubMed 28929030
September 19, 2017
Analysis of drug binding pockets and repurposing opportunities for twelve essential enzymes of ESKAPE pathogens
2 citations
524 downloads
1,780 views
, , ,
bioinformatics
computational-biology
microbiology
pharmacology
https://doi.org/10.7717/peerj.3765 PubMed 28948099
September 15, 2017
Association of rs1801157 single nucleotide polymorphism of CXCL12 gene in breast cancer in Pakistan and in-silico expression analysis of CXCL12–CXCR4 associated biological regulatory network
4 citations
403 downloads
1,777 views
,
bioinformatics
computational-biology
genetics
epidemiology
https://doi.org/10.7717/peerj.3822 PubMed 28929029
September 8, 2017
Variance component testing for identifying differentially expressed genes in RNA-seq data
3 citations
369 downloads
1,699 views
, , , ,
bioinformatics
statistics
https://doi.org/10.7717/peerj.3797 PubMed 28929020
September 4, 2017
Prediction of endoplasmic reticulum resident proteins using fragmented amino acid composition and support vector machine
10 citations
534 downloads
1,620 views
, ,
bioinformatics
computational-biology
https://doi.org/10.7717/peerj.3561 PubMed 28890846
September 26, 2017
The Legionella pneumophila effector Lpg1137 is a homologue of mitochondrial SLC25 carrier proteins, not of known serine proteases
1 citation
394 downloads
1,428 views
,
bioinformatics
molecular-biology
https://doi.org/10.7717/peerj.3849 PubMed 28966893
Automated classification of tropical shrub species

Leaf samples

September 12, 2017

Automated classification of tropical shrub species

Researchers have developed a hybrid ‘leaf shape’ and machine learning approach to build an automated identification system for tropical shrubs.

- read article

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I told my colleagues that PeerJ is a journal where they need to publish if they want their paper to be published quickly and with the strict peer review expected from a good journal.
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