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March 2017

Table of Contents - PeerJ (Biology Articles)

Na+/K+-ATPase

March 14, 2017

Computer modelling the conformers of the ATP binding loop of Na+/K+-ATPase

In this article, researchers have provided the first report on the existence of three conformers of the big cytoplasmic loop binding ATP.

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March 30, 2017

Comparative proteomics of Rhizopus delemar ATCC 20344 unravels the role of amino acid catabolism in fumarate accumulation

8 citations

460 downloads

2,509 views

Dorett I. Odoni, Juan A. Tamayo-Ramos, Jasper Sloothaak, Ruben G.A. van Heck, Vitor A.P. Martins dos Santos, Leo H. de Graaff, Maria Suarez-Diez, Peter J. Schaap

https://doi.org/10.7717/peerj.3133 PubMed 28382234

March 29, 2017

Assembly and comparative analysis of complete mitochondrial genome sequence of an economic plant Salix suchowensis

19 citations

824 downloads

3,216 views

Ning Ye, Xuelin Wang, Juan Li, Changwei Bi, Yiqing Xu, Dongyang Wu, Qiaolin Ye

https://doi.org/10.7717/peerj.3148 PubMed 28367378

March 29, 2017

Delineating the impact of machine learning elements in pre-microRNA detection

8 citations

387 downloads

1,833 views

Müşerref Duygu Saçar Demirci, Jens Allmer

https://doi.org/10.7717/peerj.3131 PubMed 28367373

March 29, 2017

Automatic single- and multi-label enzymatic function prediction by machine learning

14 citations

1,766 downloads

1,978 views

Shervine Amidi, Afshine Amidi, Dimitrios Vlachakis, Nikos Paragios, Evangelia I. Zacharaki

https://doi.org/10.7717/peerj.3095 PubMed 28367366

March 28, 2017

SLIMM: species level identification of microorganisms from metagenomes

16 citations

872 downloads

5,373 views

Temesgen Hailemariam Dadi, Bernhard Y. Renard, Lothar H. Wieler, Torsten Semmler, Knut Reinert

https://doi.org/10.7717/peerj.3138 PubMed 28367376

March 23, 2017

Systematic drug repositioning through mining adverse event data in ClinicalTrials.gov

17 citations

1,037 downloads

4,068 views

Eric Wen Su, Todd M. Sanger

https://doi.org/10.7717/peerj.3154 PubMed 28348935

March 15, 2017

Identification of dysregulated genes in rheumatoid arthritis based on bioinformatics analysis

6 citations

679 downloads

2,905 views

Ruihu Hao, Haiwei Du, Lin Guo, Fengde Tian, Ning An, Tiejun Yang, Changcheng Wang, Bo Wang, Zihao Zhou

https://doi.org/10.7717/peerj.3078 PubMed 28316886

March 14, 2017

From big data to diagnosis and prognosis: gene expression signatures in liver hepatocellular carcinoma

15 citations

746 downloads

3,586 views

Hong Yang, Xin Zhang, Xiao-yong Cai, Dong-yue Wen, Zhi-hua Ye, Liang Liang, Lu Zhang, Han-lin Wang, Gang Chen, Zhen-bo Feng

https://doi.org/10.7717/peerj.3089 PubMed 28316892

March 14, 2017

Computer modelling reveals new conformers of the ATP binding loop of Na⁺/K⁺-ATPase involved in the transphosphorylation process of the sodium pump

2 citations

665 downloads

2,431 views

Gracian Tejral, Bruno Sopko, Alois Necas, Wilhelm Schoner, Evzen Amler

https://doi.org/10.7717/peerj.3087 PubMed 28316890

March 14, 2017

Comparison of methods of alert acknowledgement by critical care clinicians in the ICU setting

3 citations

488 downloads

2,176 views

Andrew M. Harrison, Charat Thongprayoon, Christopher A. Aakre, Jack Y. Jeng, Mikhail A. Dziadzko, Ognjen Gajic, Brian W. Pickering, Vitaly Herasevich

https://doi.org/10.7717/peerj.3083 PubMed 28316887

March 14, 2017

Middle Pleistocene protein sequences from the rhinoceros genus Stephanorhinus and the phylogeny of extant and extinct Middle/Late Pleistocene Rhinocerotidae

29 citations

758 downloads

4,406 views

Frido Welker, Geoff M. Smith, Jarod M. Hutson, Lutz Kindler, Alejandro Garcia-Moreno, Aritza Villaluenga, Elaine Turner, Sabine Gaudzinski-Windheuser

https://doi.org/10.7717/peerj.3033 PubMed 28316883

March 9, 2017

Differential bicodon usage in lowly and highly abundant proteins

13 citations

736 downloads

2,720 views

Luis A. Diambra

https://doi.org/10.7717/peerj.3081 PubMed 28289571

March 7, 2017

Sorghum and wheat differentially affect caecal microbiota and associated performance characteristics of meat chickens

14 citations

543 downloads

1,872 views

Eduardo Crisol-Martínez, Dragana Stanley, Mark S. Geier, Robert J. Hughes, Robert J. Moore

https://doi.org/10.7717/peerj.3071 PubMed 28286717

March 2, 2017

Exploring biomedical ontology mappings with graph theory methods

1 citation

528 downloads

1,896 views

Simon Kocbek, Jin-Dong Kim

https://doi.org/10.7717/peerj.2990 PubMed 28265499

March 1, 2017

Genetic and structural study of DNA-directed RNA polymerase II of Trypanosoma brucei, towards the designing of novel antiparasitic agents

8 citations

517 downloads

1,750 views

Louis Papageorgiou, Vasileios Megalooikonomou, Dimitrios Vlachakis

https://doi.org/10.7717/peerj.3061 PubMed 28265521

March 1, 2017

A supertree pipeline for summarizing phylogenetic and taxonomic information for millions of species

32 citations

733 downloads

3,656 views

Benjamin D. Redelings, Mark T. Holder

https://doi.org/10.7717/peerj.3058 PubMed 28265520

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March 2017

Table of Contents - PeerJ (Biology Articles)

Na+/K+-ATPase

Computer modelling the conformers of the ATP binding loop of Na+/K+-ATPase

Na+/K+-ATPase

Computer modelling the conformers of the ATP binding loop of Na+/K+-ATPase

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