title: PeerJ description: Articles published in PeerJ link: https://peerj.com/articles/index.rss3?journal=peerj&page=518 creator: info@peerj.com PeerJ errorsTo: info@peerj.com PeerJ language: en title: The effectiveness of hepatitis B vaccine in toddlers based on the five-year period national basic health research (Riskesdas 2007, 2013 and 2018) in Indonesia link: https://peerj.com/articles/15199 last-modified: 2023-05-15 description: BackgroundHepatitis B is a viral infection that has a high prevalence in Indonesia. The Ministry of Health of Indonesia has conducted a national vaccination program for hepatitis B. In order to evaluate the success of the hepatitis B vaccination in Indonesia, a community study based on basic health research (Riskesdas) was performed nationwide since 2007 for five year period in 2007, 2013, and 2018.MethodsFurther statistical analysis was performed specifically for the children under 59 months old (toddlers) immunized in both urban and rural areas in 2007, 2013, and 2018 based on certain characteristics by examining antibodies against HBsAg (anti-HBs), IgG antibodies against the core antigen (HBcAb), surface antigen (HBsAg) of hepatitis B virus (HBV). The data obtained from the data management laboratory of Ministry of Health, Indonesia, was analyzed with Bivariate analysis with continuity correction chi-square or Pearson chi-square using Stata software version 16.ResultsThis study showed an increase in hepatitis B coverage of complete immunization (30% in 2007, 60.3% in 2013, and 57% in 2018), which was also influenced by mothers’ level of education (Pearson chi-square , p ¡ 0.05) and access to health service points within 30 minutes (OR = 1.3–2.8, p ¡ 0.05). The trend of the percentage of immune status (anti-HBs) was increased (41.8% in 2007; 56.1% in 2013; and 79.1% in 2018). The higher anti-HBs was found in complete hepatitis B immunization status (OR = 1.5–2, p ¡ 0.05) and in good nutritional status (p ¡ 0.05). However, the anti-HBs was found decreased with increasing age (p ¡ 0.05). The trend of positive HBcAb (exposure to HBV infection) showed a decrease gradually of almost ten times from 2007 (8.6%-13.5%) compared to 2013 (2.6%-11.1%) and 2018 (1.1%-2%). Urban areas were at higher risk of hepatitis B exposure (OR = 1.4–2.2) than rural areas (OR = 0.37–0.80). The HBsAg data were only available in 2013 and 2018. Riskesdas data analysis showed the prevalence of hepatitis B (HBsAg) was lower in complete immunization status than that in incomplete one (p ¡ 0.05), but with an increase from 3.9% (2013) to 9.3% (2018), possibly due to inappropriate implementation of birth dose immunization or a vaccine-escape mutant from the HBV variants.ConclusionsThe effectiveness of hepatitis B vaccine obtained from the three Riskesdas periods in Indonesia showed an improvement, with an increase in immune status, reduced exposure to HBV and a lower prevalence of hepatitis B in children with complete vaccination. However, there is still an increase in hepatitis B infection, especially in urban areas. Therefore, a long-term evaluation of immunization coverage especially ensuring that the initial dose of immunization was given within the first 24 h of birth, HBsAg and HBcAb, nutritional status, genomic surveillance of HBV, and other aspects of program quality evaluation are needed to ensure that elimination efforts have been implemented properly. creator: Christina Safira Whinie Lestari creator: Rita Marleta Dewi creator: Sunarno Sunarno creator: Armedy Ronny Hasugian creator: Sarwo Handayani creator: Masri Sembiring Maha creator: Novaria Sari Dewi Panjaitan creator: Nathalia Ningrum creator: Meiriani Sari creator: Firda Fairuza uri: https://doi.org/10.7717/peerj.15199 license: https://creativecommons.org/licenses/by/4.0/ rights: ©2023 Lestari et al. title: Identification and functional analysis of non-coding regulatory small RNA FenSr3 in Bacillus amyloliquefaciens LPB-18 link: https://peerj.com/articles/15236 last-modified: 2023-05-15 description: Bacillus amyloliquefaciens is an interesting microbe in the food processing and manufacturing industries. Non-coding small RNAs (sRNAs) have been shown to play a crucial role in the physiology and metabolism of bacteria by post-transcriptionally regulating gene expression. This study investigated the function of novel sRNA FenSr3 by constructing fenSr3 deficient strain and complementary strains in B. amyloliquefaciens LPB-18 , which were named LPN-18N and LPB-18P, respectively. The result showed significant differences in fengycin yield between strain LPB -18N and LPB-18P. The production of fengycin was significantly enhanced in B. amyloliquefaciens LPB-18N, compared with that of the strain LPB-18 from 190.908 mg/L to 327.598 mg/L. Moreover, the production of fengycin decreased from 190.464 mg/L to 38.6 mg/L in B . amyloliquefaciens LPB-18P. A comparative transcriptome sequencing was carried out to better understand the complex regulatory mechanism. Transcription analysis revealed that 1037 genes were differentially expressed between B. amyloliquefaciens LPB-18 and B. amyloliquefaciens LPB-18N, including the key regulatory genes in fatty acid, amino acid biosynthesis, and central carbon metabolism, which could provide sufficient quantities of building precursors for fengycin biosynthesis. The biofilm formation and sporulation was also enhanced in the strain LPB-18N, which indicates that FenSr3 could play a vital role in stress resistance and promotes survival in B. amyloliquefaciens. Some sRNAs involved in stress response have been identified in the literature, but their regulatory roles in fengycin production remain unclear. The study will contribute a novel perspective to the regulation mechanism of biosynthesis and the optimization of key metabolites of B. amyloliquefaciens. creator: Panping Yang creator: Chengxin Geng creator: Shaohui Zhu creator: Zhen Zhou creator: Muhammad Bilal creator: Chengyuan Gu creator: Hai Xu creator: Linchun Ji creator: Benchang Xiao creator: Jingye Wang creator: Zhoujie Qian creator: Li Zhao creator: Yuping Zhao creator: Hedong Lu uri: https://doi.org/10.7717/peerj.15236 license: https://creativecommons.org/licenses/by/4.0/ rights: ©2023 Yang et al. title: Responses of soil organic carbon cycle to land degradation by isotopically tracing in a typical karst area, southwest China link: https://peerj.com/articles/15249 last-modified: 2023-05-15 description: BackgroundThe loss of soil organic carbon (SOC) under land degradation threatens crop production and reduces soil fertility and stability, which is more reflected in eco-sensitive environments. However, fewer studies simultaneously compared SOC variations and δ13CSOC compositions under diverse land uses, especially in karst areas.MethodsSoil profiles from two agricultural lands and a secondary forest land were selected to analyze SOC contents and their stable isotope composition (δ13CSOC) in a typical karst area located in southwest China to understand the response of the SOC cycle to land degradation. Moreover, the relationships between SOC contents and mean weight diameter (MWD) and soil erodibility (K) factor were comprehensively analyzed for assessing the response of SOC to soil degradation risk.ResultsThe mean SOC content was found to be the lowest in abandoned cropland (6.91 g/kg), followed by secondary forest land (9.31 g/kg) and grazing shrubland (34.80 g/kg), respectively. Meanwhile, the δ13CSOC values exhibited the following trend: secondary forest land (mean: −23.79‰) ≈abandoned cropland (mean: −23.76‰) >shrubland (mean: −25.33‰). The isotopic tracing results suggested that plant litter was the main contributor to SOC in the secondary forest land. Whereas abundant nitrogen from goat feces enhanced plant productivity and resulted in additional accumulation of SOC in the grazing shrubland. Conversely, long-term cultivation led to the depletion of SOC sequestration by the loss of calcium. In surface soils, the fractionation of δ13CSOC were considerably affected by the decomposition of SOC by soil microorganisms and covered vegetation rather than agricultural influences.ConclusionsThe findings indicate that the cycling of SOC and soil stability in the calcareous soil of southwest China are largely regulated by different land uses and the presence of vegetation cover. The depletion of SOC and soil physical degradation pose significant challenges for abandoned cropland, particularly in the karst area, where land degradation is inevitable. Nevertheless, moderate grazing enhances SOC levels, which is beneficial to the land fertility maintenance in the karst region. Therefore, more emphasis should be placed on the cultivation methods and management strategies for abandoned cropland in the karst area. creator: Ruiyin Han creator: Qian Zhang creator: Zhifang Xu uri: https://doi.org/10.7717/peerj.15249 license: https://creativecommons.org/licenses/by/4.0/ rights: ©2023 Han et al. title: Characterisation of pellicle-forming ability in clinical carbapenem-resistant Acinetobacter baumannii link: https://peerj.com/articles/15304 last-modified: 2023-05-15 description: BackgroundAcinetobacter baumannii was reported to have resistance towards carbapenems and the ability to form an air-liquid biofilm (pellicle) which contributes to their virulence. The GacSA two-component system has been previously shown to play a role in pellicle formation. Therefore, this study aims to detect the presence of gacA and gacS genes in carbapenem-resistant Acinetobacter baumannii (CRAB) isolates recovered from patients in intensive care units and to investigate their pellicle forming ability.MethodsThe gacS and gacA genes were screened in 96 clinical CRAB isolates using PCR assay. Pellicle formation assay was performed in Mueller Hinton medium and Luria Bertani medium using borosilicate glass tubes and polypropylene plastic tubes. The biomass of the pellicle was quantitated using the crystal violet staining assay. The selected isolates were further assessed for their motility using semi-solid agar and monitored in real-time using real-time cell analyser (RTCA).ResultsAll 96 clinical CRAB isolates carried the gacS and gacA genes, however, only four isolates (AB21, AB34, AB69 and AB97) displayed the ability of pellicle-formation phenotypically. These four pellicle-forming isolates produced robust pellicles in Mueller Hinton medium with better performance in borosilicate glass tubes in which biomass with OD570 ranging from 1.984 ± 0.383 to 2.272 ± 0.376 was recorded. The decrease in cell index starting from 13 hours obtained from the impedance-based RTCA showed that pellicle-forming isolates had entered the growth stage of pellicle development.ConclusionThese four pellicle-forming clinical CRAB isolates could be potentially more virulent, therefore further investigation is warranted to provide insights into their pathogenic mechanisms. creator: Heng Kang Ng creator: Suat Moi Puah creator: Cindy Shuan Ju Teh creator: Nuryana Idris creator: Kek Heng Chua uri: https://doi.org/10.7717/peerj.15304 license: https://creativecommons.org/licenses/by/4.0/ rights: ©2023 Ng et al. title: Chromosomal aberrations and prognostic analysis of secondary acute myeloid leukemia—a retrospective study link: https://peerj.com/articles/15333 last-modified: 2023-05-15 description: BackgroundSecondary acute myeloid leukemia (S-AML) patients generally have a poor prognosis, but the chromosomal aberrations of S-AML have been rarely reported. We aimed to explore the chromosomal aberrations and clinical significance in patients with S-AML.Patients and methodsThe clinical characteristics and karyotypes of 26 patients with S-AML were retrospectively analyzed. The overall survival (OS) was measured from the time of the patients’ transition to AML (i.e., at S-AML diagnosis).ResultsThe study included 26 S-AML patients (13 males and 13 females), with a median age of 63 years (range, 20–77 years). They transformed from various hematologic malignancies or solid tumors; most of them were secondary to myelodysplastic syndrome (MDS). About 62% of the S-AML patients showed chromosomal aberrations. The serum lactate dehydrogenase (LDH) level in S-AML patients with abnormal karyotype was higher than those with normal karyotype. Apart from the differences in treatment regimens, S-AML patients with chromosomal aberrations had shorter OS (P < 0.05).ConclusionS-AML patients with abnormal karyotype have higher LDH levels and shorter OS than normal karyotype patients, and the OS of hypodiploidy was much shorter than hyperdiploid. creator: Mingzhu Song creator: Tun Zhang creator: Dongdong Yang creator: Hao Xiao creator: Huiping Wang creator: Qianling Ye creator: Zhimin Zhai uri: https://doi.org/10.7717/peerj.15333 license: https://creativecommons.org/licenses/by/4.0/ rights: ©2023 Song et al. title: Effects of the speed on the webbed foot kinematics of mallard (Anas platyrhynchos) link: https://peerj.com/articles/15362 last-modified: 2023-05-15 description: In this study, the effect of the speed on the webbed foot locomotion of the mallard was analyzed based on a considerable number of reliable indoor test data. Four adult male mallards were selected for analysis, and the locomotion speed of the mallard was controlled using the treadmill at an accurate and adjustable speed. The locomotion pattern of the webbed foot of the mallard at different speeds was recorded using a high-speed camera. The changes in the position and conformation of the webbed foot during locomotion on a treadmill were tracked and analyzed using Simi-Motion kinematics software. The results indicated that the stride length of the mallard increased, and the stance phase duration was shortened with the increase of the speed, whereas the swing phase duration did not vary significantly. The duty factor decreased with the increase of the mallard speed but not drop below to 0.5, because the mallards flew with their wings, or moved backward relative to the treadmill with the further increase of the speed. Using the energy method to further distinguish gait, and through the percentage of congruity analysis, it was found that between 0.73 and 0.93 m/s, the gait experienced a transition from walking to grounded running, with no significant changes in spatiotemporal parameters. At speeds between 0.93 and 1.6 m/s, mallards adopt a grounded running gait. The instantaneous changes of the tarsometatarso-phalangeal joint (TMTPJ) angle and the intertarsal joint (ITJ) angle at touch-down, mid-stance and lift-off concomitant with the change of the speed were examined with the TMTPJ and ITJ angle as the research objects. Moreover, the continuous changes of the joint angles were examined in a complete stride cycle. The result indicated that the increase of the speed will also make the TMTPJ and ITJ angle change ahead of time in a stride cycle, proving the shortened stance phase duration. The ITJ angle changed much more than the TMTPJ. Thus, the above result reveals that the mallard primarily responds with the increase of the speed by adjusting the ITJ, instead of the TMTPJ. The vertical displacement of the toe joint points and the toe joint angle was studied (α joint angle is between the second toe and the third toe; β joint angle is between the third toe and the fourth toe) with a complete stride cycle as the research object. The distal phalanxes of the second, third and fourth toes first contacted the ground, and the proximal phalanx touched the ground in turn during the early stance phase duration of the mallard, as indicated by the result of this study. However, the toes got off the ground in turn from the proximal phalanxes when the mallard foot got off the ground. With the decrease of the interphalangeal α and β joint angles, the foot web tended to be close and rapidly recovered before the next touch-down. The above result reveals that the webbed foot of the mallard is a coupling system that plays a role in the adjustment of speed. creator: Dianlei Han creator: Hairui Liu creator: Zhiqian Tong creator: Jiahang Pan creator: Xinzhong Wang uri: https://doi.org/10.7717/peerj.15362 license: https://creativecommons.org/licenses/by/4.0/ rights: © 2023 Han et al. title: Infection of Atlantic tripletail Lobotes surinamensis (Teleostei: Lobotidae) by brain metacercariae Cardiocephaloides medioconiger (Digenea: Strigeidae) link: https://peerj.com/articles/15365 last-modified: 2023-05-15 description: Three juvenile Atlantic tripletail Lobotes surinamensis caught opportunistically in Charleston Harbor (South Carolina, USA) and maintained in captivity for over three months displayed an altered swimming behavior. While no direct causation can be demonstrated herein, fish were infected in their brain by strigeid trematode larvae (metacercariae) of Cardiocephaloides medioconiger, which were identified via ITS2 and 28S ribosomal RNA gene sequencing. Histology showed nonencysted metacercariae within the brain ventricle between the optic tectum and tegmentum, causing distortion of tegmental parenchyma. Aggregates of mononuclear inflammatory cells were in the ventricle adjacent to metacercariae. Metacercarial infection by Cardiocephaloides medioconiger has been reported from the brain and eyes of only two other fish species from the northern US Atlantic coast: the grey mullet Mugil cephalus and silverside Menidia menidia, but this identification is problematic and needs molecular verification. Atlantic tripletail is a new report as a second intermediate host for C. medioconiger and South Carolina is a new locality. Cardiocephaloides species in general have a low host specificity and infection by C. medioconiger could propagate to other fishes and affect neighboring natural ecosystems. creator: Isaure de Buron creator: Kristina M. Hill-Spanik creator: Tiffany Baker creator: Gabrielle Fignar creator: Jason Broach uri: https://doi.org/10.7717/peerj.15365 license: https://creativecommons.org/licenses/by/4.0/ rights: ©2023 de Buron et al. title: Urinary aluminium and its association with autism spectrum disorder in urban preschool children in Malaysia link: https://peerj.com/articles/15132 last-modified: 2023-05-12 description: BackgroundThe presence of aluminium (Al) in the human body may impact brain neurodevelopment and function, and it is thought to contribute to autism spectrum disease (ASD). The main objective of this study was to assess the association between urinary Al and the development of ASD among Malaysian preschool children in the urban city of Kuala Lumpur.MethodThis was an unmatched case–control study in which children with ASD were recruited from an autism early intervention center and typically developed (TD) children were recruited from government-run nurseries and preschools. Urine samples were collected at home, assembled temporarily at study locations, and transported to the laboratory within 24 h. The Al concentration in the children’s urine samples was determined using inductively coupled plasma mass spectrometry (ICP-MS).ResultA total of 155 preschool children; 81 ASD children and 74 TD children, aged 3 to 6 years, were enlisted in the study. This study demonstrated that ASD children had significantly higher urinary Al levels than TD children (median (interquartile range (IQR): 2.89 (6.77) µg/dL versus 0.96 (2.95) µg/dL) (p < 0.001). Higher parental education level, non-Malay ethnicity, male gender, and higher urinary Al level were the significant ASD risk factors (adjusted odds ratio (aOR) >1, p < 0.05).ConclusionA higher urine Al level was discovered to be a significant risk factor for ASD among preschool children in the urban area of Kuala Lumpur, Malaysia. creator: Mohd Shahrol Abd Wahil creator: Mohd Hasni Ja’afar creator: Zaleha Md Isa uri: https://doi.org/10.7717/peerj.15132 license: https://creativecommons.org/licenses/by/4.0/ rights: ©2023 Abd Wahil et al. title: Psychological stress responses to a live performance by professional flamenco dancers link: https://peerj.com/articles/15282 last-modified: 2023-05-12 description: Dance is a high demanding discipline that involves physiological and psychological pressures. The pressure increases when dancers perform in front of an audience that, on a physiological level, can generate hormonal responses similar to those of an athlete before a competition for social status. Low levels of testosterone (T) and high levels of cortisol (C) are related to a decrease in performance and an increase in the risk of injury. Therefore, this study sets out to analyse hormone response patterns in professional flamenco dance performances depending on whether the performances are completed successfully and whether there are differences by sex and professional category. Saliva specimens (2–5 ml) were taken from the participants before and after the performance. Samples were immunoassayed by duplicate to analyze momentary fluctuations in two hormones regularly used in studies with professional athletes. The results showed significant differences in solo dancers’ T responses before and after the performance (p < 0.01), suggesting that the dancing role in the show (soloist or corps the ballet) and responsibility over the performance were important modulators to the hormone responses observed. creator: Rosa de las Heras-Fernández creator: Guillermo Mendoza creator: Manuel Jimenez uri: https://doi.org/10.7717/peerj.15282 license: https://creativecommons.org/licenses/by/4.0/ rights: © 2023 De las Heras Fernández et al. title: A wild rice-derived peptide R14 ameliorates monosodium urate crystals-induced IL-1β secretion through inhibition of NF-κB signaling and NLRP3 inflammasome activation link: https://peerj.com/articles/15295 last-modified: 2023-05-12 description: Gout is an inflammatory arthritis initiated by the deposition of monosodium urate crystals (MSU) around the joints and surrounding tissues. MSU crystals activate the nucleotide-binding oligomerization domain-like receptor containing pyrin domain 3 (NLRP3) inflammasome to the release of interleukin-1β (IL-1β). Gout can have a substantial impact on patient’s quality of life, and currently available medicines are unable to meet all the clinical needs. This study explored anti-gout potentials of the Rice14 (R14) peptide, a peptide derived from leaves of wild rice Oryza minuta. The effects of R14 peptide on IL-1β secretion in THP-1 macrophages with MSU crystals-induced inflammation were examined. Our results clearly showed that the R14 peptide significantly inhibited the secretion of IL-1β in MSU crystals-induced macrophages, and the effects were dose-related. For safety testing, the R14 peptide did not show both cytotoxicity and hemolytic activity. In addition, the R14 peptide strongly suppressed the phospho-IκB-α and nuclear factor kappa-B (NF-κB) p65 proteins in NF-κB signaling pathway, reduced the NLRP3 expression and inhibited the MSU crystals-mediated cleavage of caspase-1 as well as mature IL-1β. The R14 peptide also reduced MSU-triggered intracellular ROS levels in macrophages. Taken together, these results indicated that R14 peptide inhibited MSU crystals-induced IL-1β production through NF-κB and NLRP3 inflammasome activation. Our findings demonstrated that R14 peptide, the newly recognized peptide from wild rice, possessed potent regulatory activity against IL-1β production in MSU crystals-induced inflammation, and we therefore propose that the R14 peptide is a promising molecule with potential clinical application in the treatment of MSU crystals-induced inflammation. creator: Supattra Charoenwutthikun creator: Kasem Chanjitwiriya creator: Sittiruk Roytrakul creator: Duangkamol Kunthalert uri: https://doi.org/10.7717/peerj.15295 license: https://creativecommons.org/licenses/by/4.0/ rights: ©2023 Charoenwutthikun et al.