title: PeerJ description: Articles published in PeerJ link: https://peerj.com/articles/index.rss3?journal=peerj&page=286 creator: info@peerj.com PeerJ errorsTo: info@peerj.com PeerJ language: en title: Examination of reliability and validity of the Self-Assessment Burden Scale-Motor for community-dwelling older adults in Japan: a validation study link: https://peerj.com/articles/17730 last-modified: 2024-07-18 description: BackgroundThe aging society in Japan is progressing rapidly compared with that in the United States and European countries. Aging limits activities of daily living (ADL) in older adults, declining their lives and functions at home. Therefore, improving their ADL to effectively support their functioning at home for as long as possible is vital. Consequently, supporters need to have a common understanding, be promptly aware of the decline in ADL, and quickly introduce rehabilitation. The Functional Independence Measure (FIM) and Barthel Index (BI) are the main scales used to quantitatively assess ADL. However, previous studies have reported that FIM requires specialized knowledge for evaluation, and BI does not appropriately capture changes in ADL. The Self-Assessment Burden Scale-Motor (SAB-M) was developed as a scale for family caregivers to appropriately assess changes in ADL in older adults. Previous studies using the SAB-M have confirmed its reliability and validity in hospitalized patients as assessed by their family caregivers. Therefore, this study aimed to investigate the reliability and validity of the SAB-M among community-dwelling older adults as assessed by their family caregivers.MethodsThis study included community-dwelling older adults who received home-visit rehabilitation at the first author’s facility between October 2020 and December 2020 in Japan. Following previous studies, the SAB-M was used by family caregivers to assess 20 older adults twice for intra-rater reliability. Furthermore, 168 older adults were evaluated by family caregivers for internal consistency using the SAB-M. For criterion validity, the SAB-M was used for the assessment by family caregivers, and therapists used the FIM-Motor (FIM-M). This study used the weighted kappa, Cronbach’s alpha, and Spearman’s rank correlation coefficients for the statistical analysis of intra-rater reliability, internal consistency, and criterion validity, respectively.ResultsThe weighted kappa coefficient for the total score was 0.98 (p < 0.01) and individual item, it was 0.93 for feeding (p < 0.01), 0.91 for bathing (p < 0.01), 0.98 for dressing (p < 0.01), 0.94 for transfer (p < 0.01), 0.94 for walking/wheelchair (p < 0.01), 0.95 for stairs (p < 0.01), and 0.96 for bladder management (p < 0.01). The Cronbach’s alpha was 0.93 for the seven items. The Spearman’s rank correlation coefficient between the SAB-M and FIM-M scores was 0.91 (p < 0.01).ConclusionThe SAB-M has sufficient reliability and validity among community-dwelling older adults. Family caregivers can routinely assess changes in the ADL of community-dwelling older adults using the SAB-M, enabling them to promptly consider introducing rehabilitation when older adults’ ADL declines. Therefore, implementing SAB-M helps older adults live and function at home for as long as possible. creator: Hiroshi Warabino creator: Toshikatsu Kaneda creator: Yuma Nagata creator: Katsushi Yokoi creator: Kazuyo Nakaoka creator: Yasuhiro Higashi creator: Yoshimi Yuri creator: Hiroko Hashimoto creator: Shinichi Takabatake uri: https://doi.org/10.7717/peerj.17730 license: https://creativecommons.org/licenses/by/4.0/ rights: ©2024 Warabino et al. title: Assembly and evolutionary analysis of the complete mitochondrial genome of Trichosanthes kirilowii, a traditional Chinese medicinal plant link: https://peerj.com/articles/17747 last-modified: 2024-07-18 description: Trichosanthes kirilowii (T. kirilowii) is a valuable plant used for both medicinal and edible purposes. It belongs to the Cucurbitaceae family. However, its phylogenetic position and relatives have been difficult to accurately determine due to the lack of mitochondrial genomic information. This limitation has been an obstacle to the potential applications of T. kirilowii in various fields. To address this issue, Illumina and Nanopore HiFi sequencing were used to assemble the mitogenome of T. kirilowii into two circular molecules with sizes of 245,700 bp and 107,049 bp, forming a unique multi-branched structure. The mitogenome contains 61 genes, including 38 protein-coding genes (PCGs), 20 tRNAs, and three rRNAs. Within the 38 PCGs of the T. kirilowii mitochondrial genome, 518 potential RNA editing sites were identified. The study also revealed the presence of 15 homologous fragments that span both the chloroplast and mitochondrial genomes. The phylogenetic analysis strongly supports that T. kirilowii belongs to the Cucurbitaceae family and is closely related to Luffa. Collinearity analysis of five Cucurbitaceae mitogenomes shows a high degree of structural variability. Interestingly, four genes, namely atp1, ccmFC, ccmFN, and matR, played significant roles in the evolution of T. kirilowii through selection pressure analysis. The comparative analysis of the T. kirilowii mitogenome not only sheds light on its functional and structural features but also provides essential information for genetic studies of the genus of Cucurbitaceae. creator: Zhuanzhuan Jiang creator: Yuhan Chen creator: Xingyu Zhang creator: Fansong Meng creator: Jinli Chen creator: Xu Cheng uri: https://doi.org/10.7717/peerj.17747 license: https://creativecommons.org/licenses/by/4.0/ rights: ©2024 Jiang et al. title: Exploring the technological dimension of Autonomous sensory meridian response-induced physiological responses link: https://peerj.com/articles/17754 last-modified: 2024-07-18 description: BackgroundIn recent years, the scientific community has been captivated by the intriguing Autonomous sensory meridian response (ASMR), a unique phenomenon characterized by tingling sensations originating from the scalp and propagating down the spine. While anecdotal evidence suggests the therapeutic potential of ASMR, the field has witnessed a surge of scientific interest, particularly through the use of neuroimaging techniques including functional magnetic resonance imaging (fMRI) as well as electroencephalography (EEG) and physiological measures such as eye tracking (Pupil Diameter), heart rate (HR), heartbeat-evoked potential (HEP), blood pressure (BP), pulse rates (PR), finger photoplethysmography (PPG), and skin conductance (SC). This article is intended to provide a comprehensive overview of technology’s contributions to the scientific elucidation of ASMR mechanisms.MethodologyA meticulous literature review was undertaken to identify studies that have examined ASMR using EEG and physiological measurements. The comprehensive search was conducted across databases such as PUBMED, SCOPUS, and IEEE, using a range of relevant keywords such as ‘ASMR’, ‘Autonomous sensory meridian response’, ‘EEG’, ‘fMRI’, ‘electroencephalography’, ‘physiological measures’, ‘heart rate’, ‘skin conductance’, and ‘eye tracking’. This rigorous process yielded a substantial number of 63 PUBMED and 166 SCOPUS-related articles, ensuring the inclusion of a wide range of high-quality research in this review.ResultsThe review uncovered a body of research utilizing EEG and physiological measures to explore ASMR’s effects. EEG studies have revealed distinct patterns of brain activity associated with ASMR experiences, particularly in regions implicated in emotional processing and sensory integration. In physiological measurements, a decrease in HR and an increase in SC and pupil diameter indicate relaxation and increased attention during ASMR-triggered stimuli.ConclusionsThe findings of this review underscore the significance of EEG and physiological measures in unraveling the psychological and physiological effects of ASMR. ASMR experiences have been associated with unique neural signatures, while physiological measures provide valuable insights into the autonomic responses elicited by ASMR stimuli. This review not only highlights the interdisciplinary nature of ASMR research but also emphasizes the need for further investigation to elucidate the mechanisms underlying ASMR and explore its potential therapeutic applications, thereby paving the way for the development of novel therapeutic interventions. creator: Sahar Seifzadeh creator: Bozena Kostek uri: https://doi.org/10.7717/peerj.17754 license: https://creativecommons.org/licenses/by/4.0/ rights: ©2024 Seifzadeh and Kostek title: Secretomic changes of amyloid beta peptides on Alzheimer’s disease related proteins in differentiated human SH-SY5Y neuroblastoma cells link: https://peerj.com/articles/17732 last-modified: 2024-07-17 description: Alzheimer’s disease (AD) is a neurodegenerative disease that causes physical damage to neuronal connections, leading to brain atrophy. This disruption of synaptic connections results in mild to severe cognitive impairments. Unfortunately, no effective treatment is currently known to prevent or reverse the symptoms of AD. The aim of this study was to investigate the effects of three synthetic peptides, i.e., KLVFF, RGKLVFFGR and RIIGL, on an AD in vitro model represented by differentiated SH-SY5Y neuroblastoma cells exposed to retinoic acid (RA) and brain-derived neurotrophic factor (BDNF). The results demonstrated that RIIGL peptide had the least significant cytotoxic activity to normal SH-SY5Y while exerting high cytotoxicity against the differentiated cells. The mechanism of RIIGL peptide in the differentiated SH-SY5Y was investigated based on changes in secretory proteins compared to another two peptides. A total of 380 proteins were identified, and five of them were significantly detected after treatment with RIIGL peptide. These secretory proteins were found to be related to microtubule-associated protein tau (MAPT) and amyloid-beta precursor protein (APP). RIIGL peptide acts on differentiated SH-SY5Y by regulating amyloid-beta formation, neuron apoptotic process, ceramide catabolic process, and oxidative phosphorylation and thus has the potentials to treat AD. creator: Sittiruk Roytrakul creator: Janthima Jaresitthikunchai creator: Narumon Phaonakrop creator: Sawanya Charoenlappanit creator: Siriwan Thaisakun creator: Nitithorn Kumsri creator: Teerakul Arpornsuwan uri: https://doi.org/10.7717/peerj.17732 license: https://creativecommons.org/publicdomain/zero/1.0/ rights: ©2024 Roytrakul et al. title: Insects’ perception and behavioral responses to plant semiochemicals link: https://peerj.com/articles/17735 last-modified: 2024-07-17 description: Insect-plant interactions are shaped by the exchange of chemical cues called semiochemicals, which play a vital role in communication between organisms. Plants release a variety of volatile organic compounds in response to environmental cues, such as herbivore attacks. These compounds play a crucial role in mediating the interactions between plants and insects. This review provides an in-depth analysis of plant semiochemicals, encompassing their classification, current understanding of extraction, identification, and characterization using various analytical techniques, including gas chromatography-mass spectrometry (GC-MS), liquid chromatography-mass spectrometry (LC-MS), nuclear magnetic resonance (NMR) spectroscopy, and infrared (IR) spectroscopy. The article also delves into the manner in which insects perceive and respond to plant semiochemicals, as well as the impact of environmental factors on plant odor emission and insect orientation. Furthermore, it explores the underlying mechanisms by which insects perceive and interpret these chemical cues, and how this impacts their behavioral responses, including feeding habits, oviposition patterns, and mating behaviors. Additionally, the potential applications of plant semiochemicals in integrated pest management strategies are explored. This review provides insight into the intricate relationships between plants and insects mediated by semiochemicals, highlighting the significance of continued research in this field to better understand and leverage these interactions for effective pest control. creator: Diriba Fufa Serdo uri: https://doi.org/10.7717/peerj.17735 license: https://creativecommons.org/licenses/by/4.0/ rights: ©2024 Serdo title: Genome-wide identification of gene families related to miRNA biogenesis in Mangifera indica L. and their possible role during heat stress link: https://peerj.com/articles/17737 last-modified: 2024-07-17 description: Mango is a popular tropical fruit that requires quarantine hot water treatment (QHWT) for postharvest sanitation, which can cause abiotic stress. Plants have various defense mechanisms to cope with stress; miRNAs mainly regulate the expression of these defense responses. Proteins involved in the biogenesis of miRNAs include DICER-like (DCL), ARGONAUTE (AGO), HYPONASTIC LEAVES 1 (HYL1), SERRATE (SE), HUA ENHANCER1 (HEN1), HASTY (HST), and HEAT-SHOCK PROTEIN 90 (HSP90), among others. According to our analysis, the mango genome contains five DCL, thirteen AGO, six HYL, two SE, one HEN1, one HST, and five putative HSP90 genes. Gene structure prediction and domain identification indicate that sequences contain key domains for their respective gene families, including the RNase III domain in DCL and PAZ and PIWI domains for AGOs. In addition, phylogenetic analysis indicates the formation of clades that include the mango sequences and their respective orthologs in other flowering plant species, supporting the idea these are functional orthologs. The analysis of cis-regulatory elements of these genes allowed the identification of MYB, ABRE, GARE, MYC, and MeJA-responsive elements involved in stress responses. Gene expression analysis showed that most genes are induced between 3 to 6 h after QHWT, supporting the early role of miRNAs in stress response. Interestingly, our results suggest that mango rapidly induces the production of miRNAs after heat stress. This research will enable us to investigate further the regulation of gene expression and its effects on commercially cultivated fruits, such as mango, while maintaining sanitary standards. creator: Andrés G. López-Virgen creator: Mitzuko Dautt-Castro creator: Lourdes K. Ulloa-Llanes creator: Sergio Casas-Flores creator: Carmen A. Contreras-Vergara creator: Miguel A. Hernández-Oñate creator: Rogerio R. Sotelo-Mundo creator: Rosabel Vélez-de la Rocha creator: Maria A. Islas-Osuna uri: https://doi.org/10.7717/peerj.17737 license: https://creativecommons.org/licenses/by/4.0/ rights: © 2024 López-Virgen et al. title: Cellular uptake of allicin in the hCMEC/D3 human brain endothelial cells: exploring blood-brain barrier penetration in an in vitro model link: https://peerj.com/articles/17742 last-modified: 2024-07-17 description: BackgroundAllicin, a bioactive compound derived from garlic (Allium sativum), demonstrates antibacterial activity against a broad spectrum of bacteria including the most common meningitis pathogens. In order to advocate for allicin as a potential therapeutic candidate for bacterial meningitis, the present study aimed to assess the ability of allicin to cross the blood-brain barrier (BBB) using an in vitro model.MethodsThe cell viability of the human brain endothelial cell line hCMEC/D3 after incubation with various concentrations of allicin was investigated using an MTT assay at 3 and 24 h. Additionally, reactive oxygen species (ROS) production of allicin-treated hCMEC/D3 cells was examined at 3 h. The concentrations of allicin that were not toxic to the cells, as determined by the MTT assay, and did not significantly increase ROS generation, were then used to investigate allicin’s ability to traverse the in vitro BBB model for 3 h. High-performance liquid chromatography (HPLC) analysis was utilized to examine the allicin concentration capable of passing the in vitro BBB model. The cellular uptake experiments were subsequently performed to observe the uptake of allicin into hCMEC/D3 cells. The pkCSM online tool was used to predict the absorption, distribution, metabolism, excretion, and pharmacokinetic properties of allicin and S-allylmercaptoglutathione (GSSA).ResultsThe results from MTT assay indicated that the highest non-toxicity concentration of allicin on hCMEC/D3 cells was 5 µg/ml at 3 h and 2 µg/ml at 24 h. Allicin significantly enhanced ROS production of hCMEC/D3 cells at 10 µg/ml at 3 h. After applying the non-toxicity concentrations of allicin (0.5–5 µg/ml) to the in vitro BBB model for 3 h, allicin was not detectable in both apical and basolateral chambers in the presence of hCMEC/D3 cells. On the contrary, allicin was detected in both chambers in the absence of the cells. The results from cellular uptake experiments at 3 h revealed that hCMEC/D3 cells at 1 × 104 cells could uptake allicin at concentrations of 0.5, 1, and 2 µg/ml. Moreover, allicin uptake of hCMEC/D3 cells was proportional to the cell number, and the cells at 5 × 104 could completely uptake allicin at a concentration of 5 µg/ml within 0.5 h. The topological polar surface area (TPSA) predicting for allicin was determined to be 62.082 Å2, indicating its potential ability to cross the BBB. Additionally, the calculated logBB value surpassing 0.3 suggests that the compound may exhibit ease of penetration through the BBB.ConclusionThe present results suggested that allicin was rapidly taken up by hCMEC/D3 cells in vitro BBB model. The prediction results of allicin’s distribution patterns suggested that the compound possesses the capability to enter the brain. creator: Kankawi Satsantitham creator: Pishyaporn Sritangos creator: Sirawit Wet-osot creator: Nuannoi Chudapongse creator: Oratai Weeranantanapan uri: https://doi.org/10.7717/peerj.17742 license: https://creativecommons.org/licenses/by/4.0/ rights: ©2024 Satsantitham et al. title: Performance of risk prediction models for diabetic foot ulcer: a meta-analysis link: https://peerj.com/articles/17770 last-modified: 2024-07-17 description: BackgroundThe number of prediction models for diabetic foot ulcer (DFU) risk is increasing, but their methodological quality and clinical applicability are uncertain. We conducted a systematic review to assess their performance.MethodsWe searched PubMed, Cochrane Library, and Embase databases up to 10 February 2024 and extracted relevant information from selected prediction models. The Prediction model Risk Of Bias ASsessment Tool (PROBAST) checklist was used to assess bias risk and applicability. All statistical analyses were conducted in Stata 14.0.ResultsInitially, 13,562 studies were retrieved, leading to the inclusion of five development and five validation models from eight studies. DFU incidence ranged from 6% to 16.8%, with age and hemoglobin A1C (HbA1c) commonly used as predictive factors. All included studies had a high risk of bias, mainly due to disparities in population characteristics and methodology. In the meta-analysis, we observed area under the curve (AUC) values of 0.78 (95% CI [0.69–0.89]) for development models and 0.84 (95% CI [0.79–0.90]) for validation models.ConclusionDFU risk prediction models show good overall accuracy, but there is a risk of bias. Adherence to the PROBAST checklist is crucial for improving their clinical applicability. creator: Panpan Guo creator: Yujie Tu creator: Ruiyan Liu creator: Zihui Gao creator: Mengyu Du creator: Yu Fu creator: Ying Wang creator: Shuxun Yan creator: Xin Shang uri: https://doi.org/10.7717/peerj.17770 license: https://creativecommons.org/licenses/by/4.0/ rights: © 2024 Guo et al. title: Wearable accelerometers reveal objective assessment of walking symmetry and regularity in idiopathic scoliosis patients link: https://peerj.com/articles/17739 last-modified: 2024-07-16 description: BackgroundScoliosis is a multifaceted three-dimensional deformity that significantly affects patients’ balance function and walking process. While existing research primarily focuses on spatial and temporal parameters of walking and trunk/pelvic kinematics asymmetry, there remains controversy regarding the symmetry and regularity of bilateral lower limb gait. This study aims to investigate the symmetry and regularity of bilateral lower limb gait and examine the balance control strategy of the head during walking in patients with idiopathic scoliosis.MethodsThe study involved 17 patients with idiopathic scoliosis of Lenke 1 and Lenke 5 classifications, along with 17 healthy subjects for comparison. Three-dimensional accelerometers were attached to the head and L5 spinous process of each participant, and three-dimensional motion acceleration signals were collected during a 10-meter walking test. Analysis of the collected acceleration signals involved calculating five variables related to the symmetry and regularity of walking: root mean square (RMS) of the acceleration signal, harmonic ratio (HR), step regularity, stride regularity, and gait symmetry.ResultsOur analysis reveals that, during the walking process, the three-dimensional motion acceleration signals acquired from the lumbar region of patients diagnosed with idiopathic scoliosis exhibit noteworthy disparities in the RMS of the vertical axis (RMS-VT) and the HR of the vertical axis (HR-VT) when compared to the corresponding values in the healthy control (RMS-VT: 1.6 ± 0.41 vs. 3 ± 0.47, P < 0.05; HR-VT: 3 ± 0.72 vs. 3.9 ± 0.71, P < 0.05). Additionally, the motion acceleration signals of the head in three-dimensional space, including the RMS in the anterior-posterior and vertical axis, the HR-VT, and the values of step regularity in both anterior-posterior and vertical axis, as well as the values of stride regularity in all three axes, are all significantly lower than those in the healthy control group (P < 0.05).ConclusionThe findings of the analysis suggest that the application of three-dimensional accelerometer sensors proves efficacious and convenient for scrutinizing the symmetry and regularity of walking in individuals with idiopathic scoliosis. Distinctive irregularities in gait symmetry and regularity manifest in patients with idiopathic scoliosis, particularly within the antero-posterior and vertical direction. Moreover, the dynamic balance control strategy of the head in three-dimensional space among patients with idiopathic scoliosis exhibits a relatively conservative nature when compared to healthy individuals. creator: Xiaopeng Gan creator: Xin Liu creator: Danxian Cai creator: Rongbin Zhang creator: Fanqiang Li creator: Haohuang Fang creator: Jingrou Huang creator: Chenguang Qiu creator: Hongrui Zhan uri: https://doi.org/10.7717/peerj.17739 license: https://creativecommons.org/licenses/by/4.0/ rights: ©2024 Gan et al. title: Production of recombinant human epidermal growth factor fused with HaloTag protein and characterisation of its biological functions link: https://peerj.com/articles/17806 last-modified: 2024-07-16 description: Epidermal growth factor (EGF) protein is a crucial biomolecule involved in regulating cell growth, proliferation, migration and differentiation, which is used in various therapeutic applications, such as wound healing and tissue regeneration. The production of recombinant EGF is essential for studying its biological function and for its clinical translation. However, EGF protein expressed in prokaryotic cells often occurs in inclusion bodies, and co-expression with soluble tag protein is an effective method to prepare recombinant EGF. In this study, we expressed recombinant human EGF (rhEGF) fused to a HaloTag (Halo-rhEGF) and a large portion of Halo-rhEGF was found in the soluble fraction. Cell growth assay showed that the purified Halo-rhEGF protein could promote the proliferation of fibroblasts (NIH 3T3) and epithelial cells (HaCaT), and significantly increased their viability. Phosphorylation of the intracellular signaling proteins, ERK1/2 and c-Jun, was stimulated by treatment with Halo-rhEGF and the expression levels of proteins regulating cell proliferation were significantly increased. RNA sequencing analysis revealed that rhEGF could increase the transcription of genes enriched in ribosome generation and cell proliferation. Moreover, Halo-rhEGF can be labelled by HaloTag ligand for fluorescence imaging and can be slowly released in tissue repair by binding to anion biomaterials. In conclusion, HaloTag is an efficient fusion tag for rhEGF protein expression, purification and controlled release, and Halo-rhEGF can promote the proliferation and viability of epithelial and fibroblast cells. creator: Mengru Bai creator: Yezhuo Liu creator: Hongyin Liu creator: Yangyang Jia creator: Xiangqin Tian creator: Changye Sun uri: https://doi.org/10.7717/peerj.17806 license: https://creativecommons.org/licenses/by/4.0/ rights: © 2024 Bai et al.