title: PeerJ description: Articles published in PeerJ link: https://peerj.com/articles/index.rss3?journal=peerj&page=1646 creator: info@peerj.com PeerJ errorsTo: info@peerj.com PeerJ language: en title: Pheromones of three ambrosia beetles in the Euwallacea fornicatus species complex: ratios and preferences link: https://peerj.com/articles/3957 last-modified: 2017-10-23 description: Three cryptic species in the Euwallacea fornicatus species complex were reared in laboratory colonies and investigated for the presence of pheromones. Collections of volatiles from combinations of diet, fungus, beetles, and galleries from polyphagous shot hole borer (Euwallacea sp. #1) revealed the presence of 2-heneicosanone and 2-tricosanone only in the presence of beetles, regardless of sex. Subsequent examination of volatiles from the other two species, tea shot hole borer (Euwallacea sp. #2) and Kuroshio shot hole borer (Euwallacea sp. #5), revealed these two ketones were present in all three species but in different ratios. In dual choice olfactometer behavioral bioassays, mature mated females were strongly attracted to a synthetic binary blend of ketones matching their own natural ratios. However, females in each species were repelled by ketone blends in ratios corresponding to the other two species. Males of each species responded similarly to females when presented with ratios matching their own or the other two species. The presence of these compounds in the three beetle species, in ratios unique to each species, and their strong species-specific attraction and repellency, suggests they are pheromones. The ecological function of these pheromones is discussed. In addition to the pheromones, the previously known attractant (1S,4R)-p-menth-2-en-1-ol (also known as quercivorol) was discovered in the presence of the fungal symbionts, but not in association with the beetles. Quercivorol was tested in a dual-choice olfactometer and was strongly attractive to all three species. This evidence suggests quercivorol functions as a kairomone for members of the E. fornicatus species complex, likely produced by the symbiotic fungi. creator: Miriam F. Cooperband creator: Allard A. Cossé creator: Tappey H. Jones creator: Daniel Carrillo creator: Kaitlin Cleary creator: Isaiah Canlas creator: Richard Stouthamer uri: https://doi.org/10.7717/peerj.3957 license: http://creativecommons.org/licenses/by/4.0/ rights: ©2017 Cooperband et al. title: Learning performance and brain structure of artificially-reared honey bees fed with different quantities of food link: https://peerj.com/articles/3858 last-modified: 2017-10-23 description: BackgroundArtificial rearing of honey bee larvae is an established method which enables to fully standardize the rearing environment and to manipulate the supplied diet to the brood. However, there are no studies which compare learning performance or neuroanatomic differences of artificially-reared (in-lab) bees in comparison with their in-hive reared counterparts.MethodsHere we tested how different quantities of food during larval development affect body size, brain morphology and learning ability of adult honey bees. We used in-lab rearing to be able to manipulate the total quantity of food consumed during larval development. After hatching, a subset of the bees was taken for which we made 3D reconstructions of the brains using confocal laser-scanning microscopy. Learning ability and memory formation of the remaining bees was tested in a differential olfactory conditioning experiment. Finally, we evaluated how bees reared with different quantities of artificial diet compared to in-hive reared bees.ResultsThorax and head size of in-lab reared honey bees, when fed the standard diet of 160 µl or less, were slightly smaller than hive bees. The brain structure analyses showed that artificially reared bees had smaller mushroom body (MB) lateral calyces than their in-hive counterparts, independently of the quantity of food they received. However, they showed the same total brain size and the same associative learning ability as in-hive reared bees. In terms of mid-term memory, but not early long-term memory, they performed even better than the in-hive control.DiscussionWe have demonstrated that bees that are reared artificially (according to the Aupinel protocol) and kept in lab-conditions perform the same or even better than their in-hive sisters in an olfactory conditioning experiment even though their lateral calyces were consistently smaller at emergence. The applied combination of experimental manipulation during the larval phase plus subsequent behavioral and neuro-anatomic analyses is a powerful tool for basic and applied honey bee research. creator: Karin Steijven creator: Johannes Spaethe creator: Ingolf Steffan-Dewenter creator: Stephan Härtel uri: https://doi.org/10.7717/peerj.3858 license: http://creativecommons.org/licenses/by/4.0/ rights: ©2017 Steijven et al. title: Oxygen-limited metabolism in the methanotroph Methylomicrobium buryatense 5GB1C link: https://peerj.com/articles/3945 last-modified: 2017-10-20 description: The bacteria that grow on methane aerobically (methanotrophs) support populations of non-methanotrophs in the natural environment by excreting methane-derived carbon. One group of excreted compounds are short-chain organic acids, generated in highest abundance when cultures are grown under O2-starvation. We examined this O2-starvation condition in the methanotroph Methylomicrobium buryatense 5GB1. The M. buryatense 5GB1 genome contains homologs for all enzymes necessary for a fermentative metabolism, and we hypothesize that a metabolic switch to fermentation can be induced by low-O2 conditions. Under prolonged O2-starvation in a closed vial, this methanotroph increases the amount of acetate excreted about 10-fold, but the formate, lactate, and succinate excreted do not respond to this culture condition. In bioreactor cultures, the amount of each excreted product is similar across a range of growth rates and limiting substrates, including O2-limitation. A set of mutants were generated in genes predicted to be involved in generating or regulating excretion of these compounds and tested for growth defects, and changes in excretion products. The phenotypes and associated metabolic flux modeling suggested that in M. buryatense 5GB1, formate and acetate are excreted in response to redox imbalance. Our results indicate that even under O2-starvation conditions, M. buryatense 5GB1 maintains a metabolic state representing a combination of fermentation and respiration metabolism. creator: Alexey Gilman creator: Yanfen Fu creator: Melissa Hendershott creator: Frances Chu creator: Aaron W. Puri creator: Amanda Lee Smith creator: Mitchell Pesesky creator: Rose Lieberman creator: David A.C. Beck creator: Mary E. Lidstrom uri: https://doi.org/10.7717/peerj.3945 license: http://creativecommons.org/licenses/by/4.0/ rights: ©2017 Gilman et al. title: The benefits of Tai Chi and brisk walking for cognitive function and fitness in older adults link: https://peerj.com/articles/3943 last-modified: 2017-10-20 description: The purpose of this study was to investigate the benefits of exercises with different cognitive demands for cognitive functions (Executive and non-Executive) in healthy older adults. A cross-sectional design was adopted. In total, 84 healthy older adults were enrolled in the study. They were categorized into the Tai Chi group (TG), the brisk walking group (BG) or the control group (CG). Each participant performed the Stroop task and a digit comparison task. The Stroop task included the following three conditions: a naming condition, an inhibition condition and an executive condition. There were two experimental conditions in the digit comparison task: the non-delay condition and the delay condition. The results indicated that participants of the TG and BG revealed significant better performance than the CG in the executive condition of cognitive tasks and fitness. There was no significant difference of reaction time (RT) and accuracy rate in the inhibition and delay conditions of cognitive tasks and fitness between the TG and BG. The TG showed shorter reaction time in the naming and the executive conditions, and more accurate in the inhibition conditions than the BG. These findings demonstrated that regular participation in brisk walking and Tai Chi have significant beneficial effects on executive function and fitness. However, due to the high cognitive demands of the exercise, Tai Chi benefit cognitive functions (Executive and non-Executive) in older adults more than brisk walking does. Further studies should research the underlying mechanisms at the behavioural and neuroelectric levels, providing more evidence to explain the effect of high-cognitive demands exercise on different processing levels of cognition. creator: Zhiguang Ji creator: Anmin Li creator: Tian Feng creator: Xiaolei Liu creator: Yihong You creator: Fanying Meng creator: Ruoqing Wang creator: Jialing Lu creator: Chunhua Zhang uri: https://doi.org/10.7717/peerj.3943 license: http://creativecommons.org/licenses/by/4.0/ rights: ©2017 Ji et al. title: Influence of current climate, historical climate stability and topography on species richness and endemism in Mesoamerican geophyte plants link: https://peerj.com/articles/3932 last-modified: 2017-10-20 description: BackgroundA number of biotic and abiotic factors have been proposed as drivers of geographic variation in species richness. As biotic elements, inter-specific interactions are the most widely recognized. Among abiotic factors, in particular for plants, climate and topographic variables as well as their historical variation have been correlated with species richness and endemism. In this study, we determine the extent to which the species richness and endemism of monocot geophyte species in Mesoamerica is predicted by current climate, historical climate stability and topography.MethodsUsing approximately 2,650 occurrence points representing 507 geophyte taxa, species richness (SR) and weighted endemism (WE) were estimated at a geographic scale using grids of 0.5 × 0.5 decimal degrees resolution using Mexico as the geographic extent. SR and WE were also estimated using species distributions inferred from ecological niche modeling for species with at least five spatially unique occurrence points. Current climate, current to Last Glacial Maximum temperature, precipitation stability and topographic features were used as predictor variables on multiple spatial regression analyses (i.e., spatial autoregressive models, SAR) using the estimates of SR and WE as response variables. The standardized coefficients of the predictor variables that were significant in the regression models were utilized to understand the observed patterns of species richness and endemism.ResultsOur estimates of SR and WE based on direct occurrence data and distribution modeling generally yielded similar results, though estimates based on ecological niche modeling indicated broader distribution areas for SR and WE than when species richness was directly estimated using georeferenced coordinates. The SR and WE of monocot geophytes were highest along the Trans-Mexican Volcanic Belt, in both cases with higher levels in the central area of this mountain chain. Richness and endemism were also elevated in the southern regions of the Sierra Madre Oriental and Occidental mountain ranges, and in the Tehuacán Valley. Some areas of the Sierra Madre del Sur and Sierra Madre Oriental had high levels of WE, though they are not the areas with the highest SR. The spatial regressions suggest that SR is mostly influenced by current climate, whereas endemism is mainly affected by topography and precipitation stability.ConclusionsBoth methods (direct occurrence data and ecological niche modeling) used to estimate SR and WE in this study yielded similar results and detected a key area that should be considered in plant conservation strategies: the central region of the Trans-Mexican Volcanic Belt. Our results also corroborated that species richness is more closely correlated with current climate factors while endemism is related to differences in topography and to changes in precipitation levels compared to the LGM climatic conditions. creator: Victoria Sosa creator: Israel Loera uri: https://doi.org/10.7717/peerj.3932 license: http://creativecommons.org/licenses/by/4.0/ rights: ©2017 Sosa and Loera title: Effects of GnRHa treatment during vitellogenesis on the reproductive physiology of thermally challenged female Atlantic salmon (Salmo salar) link: https://peerj.com/articles/3898 last-modified: 2017-10-20 description: Tasmanian Atlantic salmon (S. salar) broodstock can experience temperatures above 20 °C, which impairs reproductive development and inhibits ovulation. The present study investigated the prolonged use of gonadotropin releasing hormone analogue (GnRHa) during vitellogenesis as a means of maintaining endocrine function and promoting egg quality at elevated temperature in maiden and repeat spawning S. salar. GnRHa-treatment during vitellogenesis did not compensate for the negative effects of thermal challenge on the timing of ovulation, egg size, egg fertility or embryo survival in any fish maintained at 22 °C relative to 14 °C. The lack of effectiveness was reflected by the endocrine data, as plasma follicle stimulating hormone and luteinising hormone levels were not different between treated and untreated groups at 22 °C. Furthermore, plasma testosterone and E2 levels were unchanged in GnRHa-treated fish at 22 °C, and plasma levels were generally lower in both groups maintained at 22 °C relative to 14 °C. Transcription of vitellogenin, and zona pellucida B and C was not enhanced in GnRHa-treated fish relative to untreated fish at 22 °C, presumably due to observed suppression of plasma E2. These results indicate that thermal impairment of reproduction is likely to occur on multiple levels, and is difficult to overcome via hormonal manipulation. creator: Kelli Anderson creator: Ned Pankhurst creator: Harry King creator: Abigail Elizur uri: https://doi.org/10.7717/peerj.3898 license: http://creativecommons.org/licenses/by/4.0/ rights: ©2017 Anderson et al. title: First record of the family Sphyrapodidae Guţu, 1980 (Crustacea: Peracarida: Apseudomorpha) with the description of a new species of Sphyrapus from the Colombian Caribbean link: https://peerj.com/articles/3947 last-modified: 2017-10-19 description: A new sphyrapodid tanaidacean, Sphyrapus caribensis sp. nov. is described and a new record of Kudinopasternakia siegi is reported for the Colombian Caribbean based on samples collected during cruises in 2014–2015. The new species appears to be most closely related to the northeast Atlantic species, Sphyrapus malleolus. Sphyrapus caribensis can be distinguished from Sphyrapus malleolus by a combination of characters, including the maxillipedal basis without long distal seta, the number of setae on the distoventral margin of pereopods 1 and 2, and the number of plumose seta on the pleopod basis. A key for the separation of Sphyrapus species is presented. creator: Andrés G. Morales-Núñez creator: Catalina Morales-Ruiz creator: Néstor E. Ardila uri: https://doi.org/10.7717/peerj.3947 license: http://creativecommons.org/licenses/by/4.0/ rights: © 2017 Morales-Núñez et al. title: The neuroprotective effect of nicotine in Parkinson’s disease models is associated with inhibiting PARP-1 and caspase-3 cleavage link: https://peerj.com/articles/3933 last-modified: 2017-10-19 description: Clinical evidence points to neuroprotective effects of smoking in Parkinson’s disease (PD), but the molecular mechanisms remain unclear. We investigated the pharmacological pathways involved in these neuroprotective effects, which could provide novel ideas for developing targeted neuroprotective treatments for PD. We used the ETC complex I inhibitor methylpyridinium ion (MPP+) to induce cell death in SH-SY5Y cells as a cellular model for PD and found that nicotine inhibits cell death. Using choline as a nicotinic acetylcholine receptor (nAChR) agonist, we found that nAChR stimulation was sufficient to protect SH-SY5Y cells against cell death from MPP+. Blocking α7 nAChR with methyllycaconitine (MLA) prevented the protective effects of nicotine, demonstrating that these receptors are necessary for the neuroprotective effects of nicotine. The neuroprotective effect of nicotine involves other pathways relevant to PD. Cleaved Poly (ADP-ribose) polymerase-1 (PARP-1) and cleaved caspase-3 were decreased by nicotine in 6-hydroxydopamine (6-OHDA) lesioned mice and in MPP+-treated SH-SY5Y cells. In conclusion, our data indicate that nicotine likely exerts neuroprotective effects in PD through the α7 nAChR and downstream pathways including PARP-1 and caspase-3. This knowledge could be pursued in future research to develop neuroprotective treatments for PD. creator: Justin Y.D. Lu creator: Ping Su creator: James E.M. Barber creator: Joanne E. Nash creator: Anh D. Le creator: Fang Liu creator: Albert H.C. Wong uri: https://doi.org/10.7717/peerj.3933 license: http://creativecommons.org/licenses/by/4.0/ rights: ©2017 Lu et al. title: Range expansion of a fouling species indirectly impacts local species interactions link: https://peerj.com/articles/3911 last-modified: 2017-10-19 description: We investigated how recent changes in the distribution and abundance of a fouling organism affected the strength of interactions between a commercially important foundation species and a common predator. Increases in the abundance of boring sponges that bioerode the calcified shells of oysters and other shelled organisms have been attributed to increased salinization of estuarine ecosystems. We tested the hypothesis that fouling by boring sponges will change the interaction strength between oysters and a common predator (stone crabs). We generated five oyster density treatments crossed with two sponge treatments (sponge and no sponge). We contrasted the interaction strength between stone crabs and fouled and non-fouled oysters by comparing the parameters of fitted functional response curves based on Rogers random predation model. We found that fouled oysters suffered higher predation from stone crabs, and that the increased predation risk stemmed from a reduction in the handling time needed to consume the fouled oysters. These findings highlight the importance of understanding the effects of abiotic changes on both the composition of ecological communities, and on the strengths of direct and indirect interactions among species. Global climate change is altering local ecosystems in complex ways, and the success of restoration, management, and mitigation strategies for important species requires a better appreciation for how these effects cascade through ecosystems. creator: Cori J. Speights creator: Michael W. McCoy uri: https://doi.org/10.7717/peerj.3911 license: http://creativecommons.org/licenses/by/4.0/ rights: ©2017 Speights and McCoy title: Decreased quality of life and treatment satisfaction in patients with latent autoimmune diabetes of the adult link: https://peerj.com/articles/3928 last-modified: 2017-10-18 description: ObjectivesOur main aim was to assess the quality of life (QoL) and treatment satisfaction (TS) of subjects with LADA (latent autoimmune diabetes of the adult) and compare these measures with those of patients with other diabetes types, i.e., type 1 (T1DM) and type 2 diabetes mellitus (T2DM).MethodsThis was a cross-sectional study with a total of 48 patients with LADA, 297 patients with T2DM and 124 with T1DM. The Audit of Diabetes-Dependent Quality of Life (ADDQoL-19) questionnaire and the Diabetes Treatment Satisfaction Questionnaire (DTSQ) were administered. Relevant clinical variables were also assessed. The data analysis included comparisons between groups and multivariate linear models.ResultsThe LADA patients presented lower diabetes-specific QoL (p = 0.045) and average weighted impact scores (p = 0.007) than the T2DM patients. The subgroup of LADA patients with diabetic retinopathy (DR) who were treated with insulin had a lower ADDQoL average weighted impact score than the other diabetic groups. Although the overall measure of TS was not different between the LADA and T2DM (p = 0.389) and T1DM (p = 0.091) groups, the patients with LADA showed a poorer hyperglycemic frequency perception than the T2DM patients (p < 0.001) and an improved frequency of hypoglycemic perception compared with the T1DM patients (p = 0.021).ConclusionsThe current findings suggest a poorer quality of life, especially in terms of DR and insulin treatment, among patients with LADA compared with those with T1DM and T2DM. Hyperglycemia frequency perception was also poorer in the LADA patients than in the T1DM and T2DM patients. Further research with prospective studies and a large number of patients is necessary. creator: Minerva Granado-Casas creator: Montserrat Martínez-Alonso creator: Nuria Alcubierre creator: Anna Ramírez-Morros creator: Marta Hernández creator: Esmeralda Castelblanco creator: Joan Torres-Puiggros creator: Didac Mauricio uri: https://doi.org/10.7717/peerj.3928 license: http://creativecommons.org/licenses/by/4.0/ rights: ©2017 Granado-Casas et al.