title: PeerJ description: Articles published in PeerJ link: https://peerj.com/articles/index.rss3?journal=peerj&page=1435 creator: info@peerj.com PeerJ errorsTo: info@peerj.com PeerJ language: en title: Factors affecting the distribution and abundance of autumn vagrant New World warblers in northwestern California and southern Oregon link: https://peerj.com/articles/5881 last-modified: 2018-12-21 description: Birds found outside their typical range, or vagrants, have fascinated naturalists for decades. Despite broad interest in vagrancy, few attempts have been made to statistically examine the explanatory variables potentially responsible for the phenomenon. In this study, we used multiple linear regression to model the occurrence of 28 rare warbler species (family Parulidae) in autumn in northern California and southern Oregon as a function of migration distance, continental population size, distance, and bearing to both closest breeding population and breeding population center. In addition to our predictive model, we used capture data from the California coast to 300 km inland to examine relationships between the presence of vagrant warblers, regional warbler species richness and age class distribution. Our study yielded three important results: (1) vagrancy is strongly correlated with larger North American population size; (2) vagrants are more common at some coastal sites; and (3) where young birds are over-represented, vagrants tend to occur—such as on the coast and at far inland sites. Of the many explanations of rare and vagrant individuals, we feel that the most likely is that these birds represent the ends of the distributions of a normal curve of migration direction, bringing some few migrants to locations out of their normal migratory range as vagrants. We also examine the underrepresented species that, according to our model, are overdue for being recorded in our study area. creator: C. John Ralph creator: Jared D. Wolfe uri: https://doi.org/10.7717/peerj.5881 license: http://creativecommons.org/licenses/by/4.0/ rights: © 2018 Ralph and Wolfe title: Work stress and health problems of professional drivers: a hazardous formula for their safety outcomes link: https://peerj.com/articles/6249 last-modified: 2018-12-20 description: BackgroundSeveral empirical studies have shown that professional drivers are a vulnerable occupational group, usually exposed to environmental stressors and adverse work conditions. Furthermore, recent studies have associated work-related stress with negative job performances and adverse health outcomes within this occupational group, including cardiovascular diseases and unsafe vehicle operation.ObjectiveThe aim of this study was to describe the working conditions and the health status of this occupational group, and to evaluate the association between the Demand–Control model of job stress and their self-reported health and safety outcomes.MethodsA pooled sample of 3,665 Colombian professional drivers was drawn from five different studies. The Job Content Questionnaire and the General Health Questionnaire were used to measure work stress and self-reported mental health, respectively. Additionally, professional drivers self-reported health problems (hypertension, dyslipidemia, diabetes and overweight) and health-related risky behaviors (smoking and sedentary behavior).ResultsRegarding the Job Demands–Control (JDC) model, it was found that approximately a third part of Colombian professional drivers suffer from high job strain (29.1%). Correlational and multivariate analyses suggest that de JDC model of stress is associated with the professional drivers’ mental health, traffic accidents and fines, but not with other physical and behavioral health-related outcomes, which are highly prevalent among this occupational group, such as hypertension, dyslipidemia, diabetes, overweight, smoking and sedentary behavior.ConclusionThe results of this study suggest that (a) stressful working conditions are associated with health and lifestyle-related outcomes among professional drivers, and (b) that evidence-based interventions are needed in order to reduce hazardous working conditions, job stress rates and their negative impact on the health of this occupational group. creator: Sergio A. Useche creator: Boris Cendales creator: Luis Montoro creator: Cristina Esteban uri: https://doi.org/10.7717/peerj.6249 license: http://creativecommons.org/licenses/by/4.0/ rights: © 2018 Useche et al. title: Optimal control of irrupting pest populations in a climate-driven ecosystem link: https://peerj.com/articles/6146 last-modified: 2018-12-20 description: Irruptions of small consumer populations, driven by pulsed resources, can lead to adverse effects including the decline of indigenous species or increased disease spread. Broad-scale pest management to combat such effects benefits from forecasting of irruptions and an assessment of the optimal control conditions for minimising consumer abundance. We use a climate-based consumer-resource model to predict irruptions of a pest species (Mus musculus) population in response to masting (episodic synchronous seed production) and extend this model to account for broad-scale pest control of mice using toxic bait. The extended model is used to forecast the magnitude and frequency of pest irruptions under low, moderate and high control levels, and for different timings of control operations. In particular, we assess the optimal control timing required to minimise the frequency with which pests reach ‘plague’ levels, whilst avoiding excessive toxin use. Model predictions suggest the optimal timing for mouse control in beech forest, with respect to minimising plague time, is mid-September. Of the control regimes considered, a seedfall driven biannual-biennial regime gave the greatest reduction in plague time and plague years for low and moderate control levels. Although inspired by a model validated using house mouse populations in New Zealand forests, our modelling approach is easily adapted for application to other climate-driven systems where broad-scale control is conducted on irrupting pest populations. creator: E Penelope Holland creator: Rachelle N. Binny creator: Alex James uri: https://doi.org/10.7717/peerj.6146 license: http://creativecommons.org/licenses/by/4.0/ rights: ©2018 Holland et al. title: Spatial distributions, feeding ecologies, and behavioral interactions of four rabbitfish species (Siganus unimaculatus, S. virgatus, S. corallinus, and S. puellus) link: https://peerj.com/articles/6145 last-modified: 2018-12-20 description: Clarifying the underlying mechanisms that enable closely related species to coexist in a particular environment is a fundamental aspect of ecology. Coral reefs support a high diversity of marine organisms, among which rabbitfishes (family Siganidae) are a major component The present study aimed to reveal the mechanism that allows rabbitfishes to coexist on coral reefs in Okinawa, Japan, by investigating the spatial distributions, feeding ecologies, and behavioral interactions of four species: Siganus unimaculatus, S. virgatus, S. corallinus, and S. puellus. All four species had a size-specific spatial distribution, whereby small individuals were found in sheltered areas that were covered by branching and bottlebrush Acropora spp. and large individuals were found in both sheltered and exposed rocky areas. However, no clear species-specific spatial distribution was observed. There was some variation in the food items taken, with S. unimaculatus primarily feeding on brown foliose algae, red foliose algae, and red styloid algae, and S. virgatus and S. puellus preferring brown foliose algae and sponges, respectively. However, S. corallinus did not show any clear differences in food preferences from S. virgatus or S. unimaculatus, mainly feeding on brown foliose algae and red styloid algae. The four species exhibited differences in foraging substrate use, which was probably related to differences in their body shape characteristics: S. unimaculatus has a slender body with a remarkably protruding snout and mainly used concave substrates for feeding, whereas S. virgatus has a deeper body with a low degree of snout protrusion and mainly used convex substrates. The other two species have a low degree of snout protrusion combined with a deeper body in the case of S. corallinus and a slender body in the case of S. puellus and used concave, flat, and convex substrates to an equal degree for feeding. Behavioral interactions were categorized into “agonistic behaviors” (attack and agonistic displays) and “no interactions.” For all four species, a greater frequency of agonistic behaviors was observed when two conspecific pairs approached each other than when two heterospecific individuals encountered each other. Together, these results suggest that food item partitioning is one of the main factors enabling the coexistence of these four syntopic rabbitfish species, which is enhanced by species-specific differences in feeding substrates as a result of their different body shape and behavioral characteristics. creator: Atsushi Nanami uri: https://doi.org/10.7717/peerj.6145 license: http://creativecommons.org/licenses/by/4.0/ rights: ©2018 Nanami title: Effects of artemisinin on ventricular arrhythmias in response to left ventricular afterload increase and microRNA expression profiles in Wistar rats link: https://peerj.com/articles/6110 last-modified: 2018-12-20 description: BackgroundPatients with dilated cardiomyopathy, increased ventricular volume, pressure overload or dysynergistic ventricular contraction and relaxation are susceptible to develop serious ventricular arrhythmias (VA). These phenomena are primarily based on a theory of mechanoelectric feedback, which reflects mechanical changes that produce alterations in electrical activity. However, very few systematic studies have provided evidence of the preventive effects of artemisinin (ART) on VA in response to left ventricle (LV) afterload increases. MicroRNAs (miRNAs) are endogenous small non-coding RNAs that regulate expression of multiple genes by suppressing mRNAs post-transcriptionally.AimsThe aims of this study were to investigate preventive effects of ART on mechanical VA and the underling molecular mechanisms of differentially expressed miRNAs (DEMs).MethodsFor the study, 70 male Wistar rats were randomly divided into seven groups: group 1 was a control group (sham surgery); group 2 was a model group that underwent transverse aortic constriction (TAC) surgery; groups 3, 4, 5 and 6 were administered ART 75, 150, 300 and 600 mg/kg before TAC surgery, respectively; and group 7 was administered verapamil (VER) 1 mg/kg before TAC surgery. A ventricular arrhythmia score (VAS) was calculated to evaluate preventive effects of ART and VER on mechanical VA. The high throughput sequencing-based approach provided DEMs that were altered by ART pretreatment between group 2 and group 4. All predicted mRNAs of DEMs were enriched by gene ontology (GO) and Kyoto Encyclopedia annotation of Genes and Genomes (KEGG) databases. These DEMs were validated by a real time quantitative polymerase chain reaction (RT-qPCR).ResultsThe average VASs of groups 3, 4, 5, 6 and 7 were significantly reduced compared with those of group 2 (2.70 ± 0.48, 1.70 ± 0.95, 2.80 ± 0.79, 2.60 ± 0.97, 1.40 ± 0.52, vs 3.70 ± 0.67, p < 0.01, respectively). The three top GO terms were neuron projection, organ morphogenesis and protein domain specific binding. KEGG enrichment of the 16 DEMs revealed that MAPK, Wnt and Hippo signaling pathways were likely to play a substantial role in the preventive effects of ART on mechanical VA in response to LV afterload increases. All candidate DEMs with the exception of rno-miR-370-3p, rno-miR-6319, rno-miR-21-3p and rno-miR-204-5p showed high expression levels validated by RT-qPCR.ConclusionsArtemisinin could prevent mechanical VA in response to LV afterload increases. Validated DEMs could be biomarkers and therapeutic targets of ART regarding its prevention of VA induced by pressure overload. The KEGG pathway and GO annotation analyses of the target mRNAs could indicate the potential functions of candidate DEMs. These results will help to elucidate the functional and regulatory roles of candidate DEMs associated with antiarrhythmic effects of ART. creator: Xue Xu creator: Qiang Zhang creator: Huanqiu Song creator: Zhuo Ao creator: Xiang Li creator: Cheng Cheng creator: Maojing Shi creator: Fengying Fu creator: Chengtao Sun creator: Yuansheng Liu creator: Dong Han uri: https://doi.org/10.7717/peerj.6110 license: http://creativecommons.org/licenses/by/4.0/ rights: © 2018 Xu et al. title: Climatic niche shift and possible future spread of the invasive South African Orchid Disa bracteata in Australia and adjacent areas link: https://peerj.com/articles/6107 last-modified: 2018-12-20 description: Orchids are generally regarded as plants with an insignificant invasive potential and so far only one species has proved to be harmful for native flora. However, previous studies on Epipactis helleborine and Arundina graminifolia indicate that the ecological aspects of range extension in their non-native geographical range are not the same for all species of orchids. Disa bracteata in its native range, South Africa, is categorized as of little concern in terms of conservation whereas in Australia it is naturalized and considered to be an environmental weed. The aim of this research was to determine the ecological preferences enabling the spread of Disa bracteata in Western and South Australia, Victoria and Tasmania and to evaluate the effect of future climate change on its potential range. The ecological niche modeling approach indicates that most of the accessible areas are already occupied by this species but future expansion will continue based on four climate change scenarios (rcp26, rcp45, rcp60, rcp85). Further expansion is predicted especially in eastern Australia and eastern Tasmania. Moreover, there are some unpopulated but suitable habitats in New Zealand, which according to climate change scenarios will become even more suitable in the future. The most striking result of this study is the significant difference between the environmental conditions recorded in the areas which D. bracteata naturally inhabits and invasive sites—that indicates a possible niche shift. In Australia the studied species continues to populate a new niche or exploit habitats that are only moderately represented in South Africa. creator: Kamil Konowalik creator: Marta Kolanowska uri: https://doi.org/10.7717/peerj.6107 license: http://creativecommons.org/licenses/by/4.0/ rights: ©2018 Konowalik and Kolanowska title: The feasibility of predicting ground reaction forces during running from a trunk accelerometry driven mass-spring-damper model link: https://peerj.com/articles/6105 last-modified: 2018-12-20 description: BackgroundMonitoring the external ground reaction forces (GRF) acting on the human body during running could help to understand how external loads influence tissue adaptation over time. Although mass-spring-damper (MSD) models have the potential to simulate the complex multi-segmental mechanics of the human body and predict GRF, these models currently require input from measured GRF limiting their application in field settings. Based on the hypothesis that the acceleration of the MSD-model’s upper mass primarily represents the acceleration of the trunk segment, this paper explored the feasibility of using measured trunk accelerometry to estimate the MSD-model parameters required to predict resultant GRF during running.MethodsTwenty male athletes ran at approach speeds between 2–5 m s−1. Resultant trunk accelerometry was used as a surrogate of the MSD-model upper mass acceleration to estimate the MSD-model parameters (ACCparam) required to predict resultant GRF. A purpose-built gradient descent optimisation routine was used where the MSD-model’s upper mass acceleration was fitted to the measured trunk accelerometer signal. Root mean squared errors (RMSE) were calculated to evaluate the accuracy of the trunk accelerometry fitting and GRF predictions. In addition, MSD-model parameters were estimated from fitting measured resultant GRF (GRFparam), to explore the difference between ACCparam and GRFparam.ResultsDespite a good match between the measured trunk accelerometry and the MSD-model’s upper mass acceleration (median RMSE between 0.16 and 0.22 g), poor GRF predictions (median RMSE between 6.68 and 12.77 N kg−1) were observed. In contrast, the MSD-model was able to replicate the measured GRF with high accuracy (median RMSE between 0.45 and 0.59 N kg−1) across running speeds from GRFparam. The ACCparam from measured trunk accelerometry under- or overestimated the GRFparam obtained from measured GRF, and generally demonstrated larger within parameter variations.DiscussionDespite the potential of obtaining a close fit between the MSD-model’s upper mass acceleration and the measured trunk accelerometry, the ACCparam estimated from this process were inadequate to predict resultant GRF waveforms during slow to moderate speed running. We therefore conclude that trunk-mounted accelerometry alone is inappropriate as input for the MSD-model to predict meaningful GRF waveforms. Further investigations are needed to continue to explore the feasibility of using body-worn micro sensor technology to drive simple human body models that would allow practitioners and researchers to estimate and monitor GRF waveforms in field settings. creator: Niels J. Nedergaard creator: Jasper Verheul creator: Barry Drust creator: Terence Etchells creator: Paulo Lisboa creator: Mark A. Robinson creator: Jos Vanrenterghem uri: https://doi.org/10.7717/peerj.6105 license: http://creativecommons.org/licenses/by/4.0/ rights: ©2018 Nedergaard et al. title: Early swelling response to phytohemagglutinin is lower in older toads link: https://peerj.com/articles/6104 last-modified: 2018-12-20 description: The effects of age on performance of life-history traits are diverse, but a common outcome is senescence, an irreversible deterioration of physical and physiological capabilities of older individuals. Immune response is potentially bound to senescence. However, little is known about immune response ageing in amphibians. In this work, we test the hypothesis that amphibian early immune response is reduced in older individuals. To this end, we captured adult natterjack toads (Epidalea calamita) and inoculated them with phytohemagglutinin, an innocuous protein that triggers a skin-swelling immune response whose magnitude is directly proportional to the ability of the individual to mount an immune response. We measured early swelling immune response (corresponding to an innate-response stage) hourly, for six hours, and we calculated the area under the curve (AUC) for each individual’s time series, as a measure of immune response magnitude incorporating time. We estimated toad age by means of phalanx skeletochronology. Swelling and AUC decreased with age. Therefore, in accordance with our predictions, early immune response seems subject to senescence in these toads. Reduced ability to get over infections due to senescence of immune respose might be—together with a worse functioning of other organs and systems—among the causes of lower survival of older specimens. creator: Francisco Javier Zamora-Camacho creator: Mar Comas uri: https://doi.org/10.7717/peerj.6104 license: http://creativecommons.org/licenses/by/4.0/ rights: ©2018 Zamora-Camacho and Comas title: Chemical composition, antioxidant and antitumor activities of sub-fractions of wild and cultivated Pleurotus ferulae ethanol extracts link: https://peerj.com/articles/6097 last-modified: 2018-12-20 description: Pleurotus ferulae is an edible and medicinal mushroom with various bioactivities. Here, the ethanol extracts of wild and cultivated P. ferulae (PFEE-W and PFEE-C) and their subfractions including petroleum ether (Pe-W/Pe-C), ethyl acetate (Ea-W/Ea-C) and n-butanol (Ba-W/Ba-C) were prepared to evaluate their antioxidant and antitumor activities. Both PFEE-W and PFEE-C show the antioxidant activity and PFEE-W is stronger than PFEE-C. The antioxidant activities of their subfractions are in the following order: Ea > Ba > Pe. Moreover, PFEE-W and PFEE-C significantly inhibit the proliferation of murine melanoma B16 cells, human esophageal cancer Eca-109 cells, human gastric cancer BGC823 cells and human cervical cancer HeLa cells through induction of apoptosis, which partially mediated by reactive oxygen species. The antitumor activities of their subfractions are in the following order: Ea ≥ Pe > Ba. Pe-W shows higher antitumor activity compared with Pe-C, which might be correlated with the difference of their components identified by gas chromatography-mass spectrometry. These results suggest that both wild and cultivated P. ferulae have antioxidant and antitumor activities, and cultivated P. ferulae could be used to replace wild one in some functions. creator: Yi Yang creator: Changshuang Fu creator: Fangfang Zhou creator: Xiaoyu Luo creator: Jinyu Li creator: Jun Zhao creator: Jiang He creator: Xiaoqin Li creator: Jinyao Li uri: https://doi.org/10.7717/peerj.6097 license: http://creativecommons.org/licenses/by/4.0/ rights: © 2018 Yang et al. title: Undocumented translocations spawn taxonomic inflation in Sri Lankan fire rasboras (Actinopterygii, Cyprinidae) link: https://peerj.com/articles/6084 last-modified: 2018-12-20 description: A recent (2013) taxonomic review of the freshwater-fish genus Rasboroides, which is endemic to Sri Lanka, showed it to comprise four species: R. vaterifloris, R. nigromarginatus, R. pallidus and R. rohani. Here, using an integrative-taxonomic analysis of morphometry, meristics and mitochondrial DNA sequences of cytochrome b (cytb) and cytochrome oxidase subunit 1 (coi), we show that R. nigromarginatus is a synonym of R. vaterifloris, and that R. rohani is a synonym of R. pallidus. The creation and recognition of unnecessary taxa (‘taxonomic inflation’) was in this case a result of selective sampling confounded by a disregard of allometry. The population referred to R. rohani in the Walawe river basin represents an undocumented trans-basin translocation of R. pallidus, and a translocation into the Mahaweli river of R. vaterifloris, documented to have occurred ca 1980, in fact involves R. pallidus. A shared haplotype suggests the latter introduction was likely made from the Bentara river basin and not from the Kelani, as claimed. To stabilize the taxonomy of these fishes, the two valid species, R. vaterifloris and R. pallidus, are diagnosed and redescribed, and their distributions delineated. We draw attention to the wasteful diversion of conservation resources to populations resulting from undocumented translocations and to taxa resulting from taxonomic inflation. We argue against translocations except where mandated by a conservation emergency, and even then, only when supported by accurate documentation. creator: Hiranya Sudasinghe creator: Jayampathi Herath creator: Rohan Pethiyagoda creator: Madhava Meegaskumbura uri: https://doi.org/10.7717/peerj.6084 license: http://creativecommons.org/licenses/by/4.0/ rights: ©2018 Sudasinghe et al.