Foliar spraying of indoleacetic acid (IAA) enhances the phytostabilization of Pb in naturally tolerant ryegrass by limiting the root-to-shoot transfer of Pb and improving plant growth
Exogenous addition of IAA has the potential to improve the metal tolerance and phytostabilization of plants, but these effects have not been systematically investigated in naturally tolerant plants. Ryegrass (Lolium perenne L.) is a typical indigenous plant in the Lanping Pb/Zn mining area with high adaptability. This study investigated the phytostabilization ability and Pb tolerance mechanism of ryegrass in response to Pb, with or without foliar spraying of 0.1 mmol L−1 IAA. The results indicated that appropriate IAA treatment could be used to enhance the phytostabilization efficiency of naturally tolerant plants. Foliar spraying of IAA increased the aboveground and belowground biomass of ryegrass and improved root Pb phytostabilization. Compared to Pb-treated plants without exogenous IAA addition, Pb concentration in the shoots of ryegrass significantly decreased, then increased in the roots after the foliar spraying of IAA. In the 1,000 mg kg−1 Pb-treated plants, Pb concentration in the shoots decreased by 69.9% and increased by 79.1% in the roots after IAA treatment. IAA improved plant growth, especially in soils with higher Pb concentration. Foliar spraying of IAA increased shoot biomass by 35.9% and root biomass by 109.4% in 1,000 mg kg−1 Pb-treated plants, and increased shoot biomass by 196.5% and root biomass by 71.5% in 2,000 mg kg−1 Pb-treated plants. In addition, Pb stress significantly decreased the content of photosynthetic pigments and anti-oxidase activities in ryegrass, while foliar spraying of IAA remedied these negative impacts. In summary, foliar spraying of IAA could increase the biomass and improve the Pb tolerance of ryegrass.
Environmental Contamination and Remediation
Zhu et al. (2023) Foliar spraying of indoleacetic acid (IAA) enhances the phytostabilization of Pb in naturally tolerant ryegrass by limiting the root-to-shoot transfer of Pb and improving plant growth. PeerJ 11:e16560 https://doi.org/10.7717/peerj.16560
Late Cretaceous coprolite from the Opole area (southern Poland) as evidence for a variable diet in shell-crushing shark Ptychodus (Elasmobranchii: Ptychodontidae)
Background Coprolites, i.e., fossilized faeces, are an important source of knowledge on the diet and food processing mechanisms in the fossil record. Direct and indirect evidences for the dietary preferences of extinct sharks are rare in the fossil record. The first coprolite attributable to Ptychodus containing prey remains from the European Cretaceous is documented here. Methods A coprolite from the Late Cretaceous of Opole (southern Poland) was scanned using micro-computed tomography to show the arrangement of the inclusions. In addition, the cross-section was examined under the SEM/EDS to analyse the microstructure and chemical composition of the inclusions. Results Brachiopod shell fragments and foraminiferan shells are recognized and identified among the variously shaped inclusions detected through the performed analysis. Conclusions The extinct shell-crushing shark Ptychodus has been identified as the likely producer of the examined coprolite. The presence of brachiopod shell fragments indicates that at least some species of this durophagous predatory shark may have preyed on small benthic elements on the sea bottom.
Mazurek et al. (2023) Late Cretaceous coprolite from the Opole area (southern Poland) as evidence for a variable diet in shell-crushing shark Ptychodus (Elasmobranchii: Ptychodontidae). PeerJ 11:e16598 https://doi.org/10.7717/peerj.16598
Contributions of each of the four swimming strokes to elite 200-400 individual medley swimming performance in short and long course competitions
Objectives The relative contribution of each of the four strokes to performance, and whether these contributions differ substantially between short course and long course competitions is unclear. To clarify these issues the aim of this study was to assess the strokes that have more influence on the performance in the 200 and 400 m IM swimming performances of elite male and female swimmers, participating in major events: Olympic Games (OG) and World Championship (WC) in short-course and long-course from 2012 to 2021. Methods Data from 1,095 swimmers (501 women and 594 men) who competed in 200 and 400-m IM were obtained with a minimum level of 800 FINA points. Linear regression modelling and classification trees were employed to quantify differences between strokes and short/long course swimming. Results Regression analysis indicated that breaststroke (β = − 0.191; p < 0.000) and backstroke (β = − 0.185; p < 0.000) had a bigger effect on IM performance, with butterfly (β = − 0.101; p < 0.000) having a lesser impact. The classification trees showed threshold performance standards in terms of 50-m times in form-stroke events must be fulfilled to attain medal-winning performances. Conclusions These form-stroke standards represent important milestones for designing medal-oriented training strategies for both 200 IM and 400 m IM. Achieving a medallist position in 200 and 400 m IM requires obtaining specified lap times in butterfly, breaststroke and backstroke for males and females in long-course competitions, and breaststroke and backstroke for short-course competitions. The OG presents more exigent demands of lap times in butterfly, crawl and backstroke for IM swimmers.
González-Ravé et al. (2023) Contributions of each of the four swimming strokes to elite 200-400 individual medley swimming performance in short and long course competitions. PeerJ 11:e16612 https://doi.org/10.7717/peerj.16612
The relationship between leptin and periodontitis: a literature review
Leptin is a peptide hormone that regulates energy balance, immune inflammatory response, and bone metabolism. Several studies have demonstrated a relationship between leptin and periodontitis, a local inflammatory disease that progressively weakens the supporting structures of the teeth, eventually leading to tooth loss. This article reviews the existing literature and discusses leptin’s basic characteristics, its relationship with periodontitis, and its effects on periodontal tissue metabolism.
Guo et al. (2023) The relationship between leptin and periodontitis: a literature review. PeerJ 11:e16633 https://doi.org/10.7717/peerj.16633
Effects of plyometric training on measures of physical fitness in racket sport athletes: a systematic review and meta-analysis
Background Over the past decade, the popularity of racket sports has surged. Plyometric training (PT) has been the focus of extensive research because of the proven benefits it provides to athletes. However, there is a lack of systematic reviews and meta-analyses specifically evaluating the impact of PT on physical fitness metrics in racket sport athletes. This study aimed to conduct a comprehensive review and analysis of evidence derived from randomized controlled trials (RCTs) to evaluate the effects of PT on measures of physical fitness among racket sports athletes. Methods The electronic databases PubMed, Web of Science, SCOPUS, and SPORTDiscus were systematically searched up to June 2023 without placing any restrictions on the publication dates. The PICOS method was adopted to establish the inclusion criteria: (a) healthy athletes who participate in racket sports; (b) a PT program; (c) a control group; (d) assessment of physical fitness components pre- and post-PT; and (e) RCTs. The records’ methodological quality was assessed utilizing the Physiotherapy Evidence Database (PEDro) scale. The certainty in the evidence related to each outcome was evaluated using the Grading of Recommendations Assessment, Development, and Evaluation (GRADE) assessment. A random-effects model was used to calculate effect sizes (ES; Hedges’ g) between experimental and control groups. Results There were 14 eligible studies of moderate-to-high-quality, involving 746 athletes in total. The results revealed small-to-moderate effects (p < 0.05) of PT on muscle power (ES = 0.46), muscle strength (ES = 0.50), sprint speed (ES = 0.45), change of direction ability (ES = 0.76), and reaction time (ES = 0.67), while no clear evidence was found on balance and flexibility. The training-induced changes in muscle power showed no significant difference (p > 0.05) between youth (ES = 0.72) and adults (ES = 0.40). There were also similar muscle power improvements (ES = 0.36–0.54 vs 0.38–0.56, all p > 0.05) for a length of ≤7 weeks with ≤14 total PT sessions vs >7 weeks with >14 total PT sessions, and ≤2 weekly sessions vs >2 sessions. No adverse effects were reported in the included studies regarding the PT intervention. The certainty of evidence varied from very low to moderate. Conclusions: Our findings demonstrated that PT has positive effects on important indices of physical fitness among athletes participating in racket sports. Future studies are required to clarify the optimal doses and examine interactions among training variables to further promote the physical fitness of this specific population.
Deng et al. (2023) Effects of plyometric training on measures of physical fitness in racket sport athletes: a systematic review and meta-analysis. PeerJ 11:e16638 https://doi.org/10.7717/peerj.16638
Validation of an algorithm to assess regular and irregular gait using inertial sensors in healthy and stroke individuals
Background Studies using inertial measurement units (IMUs) for gait assessment have shown promising results regarding accuracy of gait event detection and spatiotemporal parameters. However, performance of such algorithms is challenged in irregular walking patterns, such as in individuals with gait deficits. Based on the literature, we developed an algorithm to detect initial contact (IC) and terminal contact (TC) and calculate spatiotemporal gait parameters. We evaluated the validity of this algorithm for regular and irregular gait patterns against a 3D optical motion capture system (OMCS). Methods Twenty healthy participants (aged 59 ± 12 years) and 10 people in the chronic phase after stroke (aged 61 ± 11 years) were equipped with 4 IMUs: on both feet, sternum and lower back (MTw Awinda, Xsens) and 26 reflective makers. Participants walked on an instrumented treadmill for 2 minutes (i) with their preferred stride lengths and (ii) once with irregular stride lengths (±20% deviation) induced by light projected stepping stones. Accuracy of the algorithm was evaluated on stride-by-stride agreement of IC, TC, stride time, length and velocity with OMCS. Bland-Altman-like plots were made for the spatiotemporal parameters, while differences in detection of IC and TC time instances were shown in histogram plots. Performance of the algorithm was compared between regular and irregular gait with a linear mixed model. This was done by comparing the performance in healthy participants in the regular vs irregular walking condition, and by comparing the agreement in healthy participants with stroke participants in the regular walking condition. Results For each condition at least 1,500 strides were included for analysis. Compared to OMCS, IMU-based IC detection in both groups and condition was on average 9–17 (SD ranging from 7 to 35) ms, while IMU-based TC was on average 15–24 (SD ranging from 12 to 35) ms earlier. When comparing regular and irregular gait in healthy participants, the difference between methods was 2.5 ms higher for IC, 3.4 ms lower for TC, 0.3 cm lower for stride length, and 0.4 cm/s higher for stride velocity in the irregular walking condition. No difference was found on stride time. When comparing the differences between methods between healthy and stroke participants, the difference between methods was 7.6 ms lower for IC, 3.8 cm lower for stride length, and 3.4 cm/s lower for stride velocity in stroke participants. No differences were found on differences between methods on TC detection and stride time between stroke and healthy participants. Conclusions Small irrelevant differences were found on gait event detection and spatiotemporal parameters due to irregular walking by imposing irregular stride lengths or pathological (stroke) gait. Furthermore, IMUs seem equally good compared to OMCS to assess gait variability based on stride time, but less accurate based on stride length.
Ensink et al. (2023) Validation of an algorithm to assess regular and irregular gait using inertial sensors in healthy and stroke individuals. PeerJ 11:e16641 https://doi.org/10.7717/peerj.16641
Genome-wide identification and expression analysis of growth-regulating factors in Dendrobium officinale and Dendrobium chrysotoxum
Background Dendrobium, one of the largest genera in Orchidaceae, is popular not only for its aesthetic appeal but for its significant medicinal value. Growth-regulating factors (GRFs) play an essential role in plant growth and development. However, there is still a lack of information about the evolution and biological function analysis of the GRF gene family among Dendrobiumspecies. Methods Growth-regulating factors from Dendrobium officinale Kimura et Migo and Dendrobium chrysotoxum Lindl. were identified by HMMER and BLAST. Detailed bioinformatics analysis was conducted to explore the evolution and function of GRF gene family in D. officinale and D. chrysotoxum using genomic data, transcriptome data and qRT-PCR technology. Results Here, we evaluated the evolution of the GRF gene family based on the genome sequences of D. officinale and D. chrysotoxum. Inferred from phylogenetic trees, the GRF genes were classified into two clades, and each clade contains three subclades. Sequence comparison analysis revealed relatively conserved gene structures and motifs among members of the same subfamily, indicating a conserved evolution of GRF genes within Dendrobiumspecies. However, considering the distribution of orthologous DoGRFs and DcGRFs, and the differences in the number of GRFs among species, we suggest that the GRF gene family has undergone different evolutionary processes. A total of 361 cis-elements were detected, with 33, 141, and 187 related to plant growth and development, stress, and hormones, respectively. The tissue-specific expression of GRFs showed that DoGRF8 may have a significant function in the stem elongation of D. officinale. Moreover, four genes were up-regulated under Methyl-jasmonic acid/methyl jasmonate (MeJA) treatment, showing that DoGRFs and DcGRFs play a crucial role in stress response. These findings provide valuable information for further investigations into the evolution and function of GRF genes in D. officinale and D. chrysotoxum.
Zhu et al. (2023) Genome-wide identification and expression analysis of growth-regulating factors in Dendrobium officinale and Dendrobium chrysotoxum. PeerJ 11:e16644 https://doi.org/10.7717/peerj.16644
Diagnostic value of albumin/fibrinogen ratio and C-reactive protein/albumin/globulin ratio for periprosthetic joint infection: a retrospective study
Background The study aims to explore diagnostic value of albumin/fibrinogen ratio (AFR) and C-reactive protein (CRP)/albumin (ALB)/globulin (GLO) ratio (CAGR) for periprosthetic joint infection (PJI). Methods A retrospective analysis was conducted on clinical data collected from 190 patients who had joint replacement surgery in Qilu Hospital of Shandong University (Qingdao), from January 2017 to December 2022. Based on the occurrence of PJI after surgery, patients were divided as an infection group (10 cases) and non-infection group (180 cases). Diagnostic indicators were analyzed, univariate and multivariate logistic regression analyses were further performed to identify factors related to PJI. Sensitivity and specificity of AFR and CAGR, both individually and in combination, were calculated using ROC curves, and their diagnostic performance was compared based on the area under the curve (AUC). Results Levels of CRP, ESR, FIB, GLO, and CAGR were significantly higher in the infection group than in non-infection group (P < 0.05). Levels of ALB and AFR were significantly lower in infection group (P < 0.05). Multivariate logistic regression analysis reviewed that CRP (OR = 3.324), ESR (OR = 2.118), FIB (OR = 3.142), ALB (OR = 0.449), GLO (OR = 1.985), AFR (OR = 0.587), and CAGR (OR = 2.469) were factors influencing PJI (P < 0.05). The AUC for AFR and CAGR in diagnosing PJI were 0.739 and 0.780, while AUC for their combined detection was 0.858. Conclusion Abnormal levels of AFR and CAGR are associated with PJI, and their combined use has certain diagnostic value for PJI.
Ji et al. (2023) Diagnostic value of albumin/fibrinogen ratio and C-reactive protein/albumin/globulin ratio for periprosthetic joint infection: a retrospective study. PeerJ 11:e16662 https://doi.org/10.7717/peerj.16662
A SNP variation in the Sucrose synthase (SoSUS) gene associated with sugar-related traits in sugarcane
Background Sugarcane (Saccharum spp.) is an economically significant crop for both the sugar and biofuel industries. Breeding sugarcane cultivars with high-performance agronomic traits is the most effective approach for meeting the rising demand for sugar and biofuels. Molecular markers associated with relevant agronomic traits could drastically reduce the time and resources required to develop new sugarcane varieties. Previous sugarcane candidate gene association analyses have found single nucleotide polymorphism (SNP) markers associated with sugar-related traits. This study aims to validate these associated SNP markers of six genes, including Lesion simulating disease 1 (LSD), Calreticulin (CALR), Sucrose synthase 1 (SUS1), DEAD-box ATP-dependent RNA helicase (RH), KANADI1 (KAN1), and Sodium/hydrogen exchanger 7 (NHX7), in a diverse population in 2-year and two-location evaluations. Methods After genotyping of seven targeted SNP markers was performed by PCR Allelic Competitive Extension (PACE) SNP genotyping, the association with sugar-related traits and important cane yield component traits was determined on a set of 159 sugarcane genotypes. The marker-trait relationships were validated and identified by both t-test analysis and an association analysis based on the general linear model. Results The mSoSUS1_SNPCh10.T/C and mSoKAN1_SNPCh7.T/C markers that were designed from the SUS1 and KAN1 genes, respectively, showed significant associations with different amounts of sugar-related traits and yield components. The mSoSUS1_SNPCh10.T/C marker was found to have more significant association with sugar-related traits, including pol, CCS, brix, fiber and sugar yield, with p values of 6.08 × 10−6 to 4.35 × 10−2, as well as some cane yield component traits with p values of 1.61 × 10−4 to 3.35 × 10−2. The significant association is consistent across four environments. Conclusion Sucrose synthase (SUS) is considered a crucial enzyme involved in sucrose metabolism. This marker is a high potential functional marker that may be used in sugarcane breeding programs to select superior sugarcane with good fiber and high sugar contents.
Khanbo et al. (2023) A SNP variation in the Sucrose synthase (SoSUS) gene associated with sugar-related traits in sugarcane. PeerJ 11:e16667 https://doi.org/10.7717/peerj.16667
Analysis and pollution evaluation of heavy metal content in soil of the Yellow River Wetland Reserve in Henan
Objective This study aims to assess the contamination levels of six heavy metals, namely arsenic (As), cadmium (Cd), chromium (Cr), copper (Cu), mercury (Hg), and lead (Pb), in the soil of the Henan Yellow River Wetland Reserve. It seeks to reveal the spatial distribution and trends of heavy metal pollution, providing a scientific basis for the rational utilization and effective protection of soil. Additionally, it aims to propose targeted management and remediation recommendations to mitigate or prevent soil pollution. Method A total of 706 soil samples were collected in this area in combination with the land use type map. As and Hg were determined by atomic fluorescence spectrometry, and Cr, Cu, Pb and Cd were determined by inductively coupled plasma mass spectrometry. Taking the soil pollution risk screening value of agricultural land (GB15618-2018) as a reference value, the sample data were statistically analyzed, and the Nemerow comprehensive pollution index method combined with ArcGIS technology was used to evaluate the soil environmental quality. Result The comprehensive pollution index of the soil in the Yellow River Wetland Reserve was 0.42, ranging from 0.17 to 2.38, which was safe and not polluted (I grade). Out of 706 sampling locations, 674 remained uncontaminated, while 26 exhibited cleanliness. Although they were in the warning line, they did not exceed the standard, accounting for 3.68% of the total number of sampling points. Five sample points were slightly polluted, accounting for 0.71% of the total sample points, and one sample point was moderately polluted, accounting for 0.14% of the total sample points. It can be seen that there are few agricultural land pollution points in the Yellow River Wetland Reserve, and the soil environment quality is generally good. Conclusion The soil in the Yellow River Wetland Reserve in Henan has a very small amount of mild and moderate pollution, and there is no severe pollution. The cleanliness is currently high.
Chen et al. (2023) Analysis and pollution evaluation of heavy metal content in soil of the Yellow River Wetland Reserve in Henan. PeerJ 11:e16454 https://doi.org/10.7717/peerj.16454