PeerJ
type: channel
link: https://peerj.com/articles/
description: Articles published in PeerJ
publisher: PeerJ Inc.
publication name: PeerJ
issn: 2167-8359
items: Histological analysis of post-eruption tooth wear adaptations, and ontogenetic changes in tooth implantation in the acrodontan squamate Pogona vitticeps
items: Porewater salinity in a southeastern United States salt marsh: controls and interannual variation
items: Modelling the dynamics of a large rock landslide in the Dolomites (eastern Italian Alps) using multi-temporal DEMs
items: Amphibian life history in a temperate environment of the Mexican Plateau: dimorphism, phenology and trophic ecology of a hylid frog, Hyla eximia (=Dryophytes eximius)
items: Changes in stigma and help-seeking in relation to postpartum depression: non-clinical parenting intervention sample
items: Cancer and mTOR inhibitors in kidney transplantation recipients
items: A taxonomically and geographically constrained information base limits non-native reptile and amphibian risk assessment: a systematic review
items: Analytical CPG model driven by limb velocity input generates accurate temporal locomotor dynamics
items: The addition of very light loads into the routine testing of the bench press increases the reliability of the force–velocity relationship
items: Wild bees of Grand Staircase-Escalante National Monument: richness, abundance, and spatio-temporal beta-diversity

Histological analysis of post-eruption tooth wear adaptations, and ontogenetic changes in tooth implantation in the acrodontan squamate Pogona vitticeps
type: item
type: AcademicArticle
description: Teeth have been a focus of research in both extinct and extant taxa alike; a significant portion of dental literature is concerned with dental patterning and replacement. Most non-mammalian vertebrates continuously replace their dentition but an anomalous group of squamates has forgone this process in only having one tooth generation; these squamates all have apically implanted teeth, a condition known as acrodonty. Acrodont dentition and various characteristics attributed to it, including a lack of replacement, have often been defined ambiguously. This study explores this type of implantation through histology in the ontogeny of the acrodont agamid Pogona vitticeps. The non-replacing teeth of this squamate provides an opportunity to study wear adaptations, maintenance of occlusion in a non-mammalian system, and most importantly post-eruption changes in the tooth bone interface. In this study the post-eruption changes combined with dental wear likely gives the appearance of acrodont implantation.
format: application/pdf
format: text/html
creator: Yara Haridy
subject: Developmental Biology
subject: Zoology
subject: Histology
description: doi:10.7717/peerj.5923
publisher: PeerJ Inc.
rights: © 2018 Haridy
abstract: Teeth have been a focus of research in both extinct and extant taxa alike; a significant portion of dental literature is concerned with dental patterning and replacement. Most non-mammalian vertebrates continuously replace their dentition but an anomalous group of squamates has forgone this process in only having one tooth generation; these squamates all have apically implanted teeth, a condition known as acrodonty. Acrodont dentition and various characteristics attributed to it, including a lack of replacement, have often been defined ambiguously. This study explores this type of implantation through histology in the ontogeny of the acrodont agamid Pogona vitticeps. The non-replacing teeth of this squamate provides an opportunity to study wear adaptations, maintenance of occlusion in a non-mammalian system, and most importantly post-eruption changes in the tooth bone interface. In this study the post-eruption changes combined with dental wear likely gives the appearance of acrodont implantation.
bibliographic citation: Haridy (2018) Histological analysis of post-eruption tooth wear adaptations, and ontogenetic changes in tooth implantation in the acrodontan squamate Pogona vitticeps. PeerJ 6:e5923 https://doi.org/10.7717/peerj.5923
date submitted: 2018-08-14
date accepted: 2018-10-12
issued: 2018-11-08
is part of: PeerJ
license: http://creativecommons.org/licenses/by/4.0/
author list: Agent
  family name: Haridy
  given name: Yara
doi: 10.7717/peerj.5923
volume: 6
issn: 2167-8359
publication name: PeerJ
publication date: 2018-11-08
copyright: ©2018 Haridy
attribution name: Haridy

Porewater salinity in a southeastern United States salt marsh: controls and interannual variation
type: item
type: AcademicArticle
description: In coastal marsh ecosystems, porewater salinity strongly affects vegetation distribution and productivity. To simulate marsh porewater salinity, an integrated, spatially explicit model was developed, accounting for tidal inundation, evaporation, and precipitation, as well as lateral and vertical exchanges in both surface waters and the subsurface. It was applied to the Duplin River marsh, Sapelo Island, USA, over a 3-year period, which covered both drought and wet conditions. Simulated porewater salinity in the low and high marsh correlated with Duplin River salinity, with evapotranspiration and precipitation leading to substantial variations in porewater salinities across seasons, in particular in the high marsh. The model revealed substantial interannual variability in marsh soil conditions, and—due to its process-based approach linked to external forcings—can be used to explore effects of sea level rise and changes in hydrological forcings on marsh soil conditions.
format: application/pdf
format: text/html
creator: David Miklesh
creator: Christof Meile
subject: Biosphere Interactions
subject: Ecohydrology
description: doi:10.7717/peerj.5911
publisher: PeerJ Inc.
rights: © 2018 Miklesh and Meile
abstract: In coastal marsh ecosystems, porewater salinity strongly affects vegetation distribution and productivity. To simulate marsh porewater salinity, an integrated, spatially explicit model was developed, accounting for tidal inundation, evaporation, and precipitation, as well as lateral and vertical exchanges in both surface waters and the subsurface. It was applied to the Duplin River marsh, Sapelo Island, USA, over a 3-year period, which covered both drought and wet conditions. Simulated porewater salinity in the low and high marsh correlated with Duplin River salinity, with evapotranspiration and precipitation leading to substantial variations in porewater salinities across seasons, in particular in the high marsh. The model revealed substantial interannual variability in marsh soil conditions, and—due to its process-based approach linked to external forcings—can be used to explore effects of sea level rise and changes in hydrological forcings on marsh soil conditions.
bibliographic citation: Miklesh et al. (2018) Porewater salinity in a southeastern United States salt marsh: controls and interannual variation. PeerJ 6:e5911 https://doi.org/10.7717/peerj.5911
date submitted: 2018-05-02
date accepted: 2018-10-10
issued: 2018-11-08
is part of: PeerJ
license: http://creativecommons.org/licenses/by/4.0/
author list: Agent
  family name: Miklesh
  given name: David
author list: Agent
  family name: Meile
  given name: Christof
doi: 10.7717/peerj.5911
volume: 6
issn: 2167-8359
publication name: PeerJ
publication date: 2018-11-08
copyright: © 2018 Miklesh and Meile
attribution name: Miklesh and Meile

Modelling the dynamics of a large rock landslide in the Dolomites (eastern Italian Alps) using multi-temporal DEMs
type: item
type: AcademicArticle
description: Latest advances in topographic data acquisition techniques have greatly enhanced the possibility to analyse landscapes in order to understand the processes that shaped them. High-resolution Digital Elevation Models (DEMs), such as LiDAR-derived ones, provide detailed topographic information. In particular, if multi-temporal DEMs are available, it is possible to carry out a detailed geomorphic change detection analysis. This analysis may provide information about the dynamics of large landslides and may thus, be useful for landslide risk assessments. However, LiDAR-derived DEMs are mostly available only as post-event surveys. The technique is relatively recent, and local or national authorities only started widespread surveys in the last decade. Therefore, it is of a certain interest to analyse the effectiveness of DEMs derived from technical cartography to produce reliable volumetric estimates related to large landslides. This study evaluates the use of a multi-source DEM of Difference (DoD) analysis for the investigation of a large landslide –Le Laste–, which occurred on November 12, 2014 on Mount Antelao (eastern Italian Alps). The landslide initiated as a 365,000 m3 rockslide close to the summit of the mountain and transformed into a debris avalanche during its runout. The comparison of pre- and post-event DEMs allowed for the identification and quantification of erosion and deposition areas, and for the estimation of landslide volume. A sound back-analysis of the landslide with the 3D numerical model DAN3D was based on this comparison and on seismic records of the event. These seismic records proved to be remarkably useful, as they allowed for the calibration of the simulated landslide velocity. This ensured the reliability of the model notwithstanding the topographic datasets, intrinsic uncertainties. We found that using a pre-event DEM derived from technical cartography tends to slightly overestimate the volume with respect to the use of the more accurate LiDA…
format: application/pdf
format: text/html
creator: Ricarda Gatter
creator: Marco Cavalli
creator: Stefano Crema
creator: Giulia Bossi
subject: Environmental Impacts
subject: Spatial and Geographic Information Science
description: doi:10.7717/peerj.5903
publisher: PeerJ Inc.
rights: © 2018 Gatter et al.
abstract: Latest advances in topographic data acquisition techniques have greatly enhanced the possibility to analyse landscapes in order to understand the processes that shaped them. High-resolution Digital Elevation Models (DEMs), such as LiDAR-derived ones, provide detailed topographic information. In particular, if multi-temporal DEMs are available, it is possible to carry out a detailed geomorphic change detection analysis. This analysis may provide information about the dynamics of large landslides and may thus, be useful for landslide risk assessments. However, LiDAR-derived DEMs are mostly available only as post-event surveys. The technique is relatively recent, and local or national authorities only started widespread surveys in the last decade. Therefore, it is of a certain interest to analyse the effectiveness of DEMs derived from technical cartography to produce reliable volumetric estimates related to large landslides. This study evaluates the use of a multi-source DEM of Difference (DoD) analysis for the investigation of a large landslide –Le Laste–, which occurred on November 12, 2014 on Mount Antelao (eastern Italian Alps). The landslide initiated as a 365,000 m3 rockslide close to the summit of the mountain and transformed into a debris avalanche during its runout. The comparison of pre- and post-event DEMs allowed for the identification and quantification of erosion and deposition areas, and for the estimation of landslide volume. A sound back-analysis of the landslide with the 3D numerical model DAN3D was based on this comparison and on seismic records of the event. These seismic records proved to be remarkably useful, as they allowed for the calibration of the simulated landslide velocity. This ensured the reliability of the model notwithstanding the topographic datasets, intrinsic uncertainties. We found that using a pre-event DEM derived from technical cartography tends to slightly overestimate the volume with respect to the use of the more accurate LiDA…
bibliographic citation: Gatter et al. (2018) Modelling the dynamics of a large rock landslide in the Dolomites (eastern Italian Alps) using multi-temporal DEMs. PeerJ 6:e5903 https://doi.org/10.7717/peerj.5903
date submitted: 2018-03-22
date accepted: 2018-10-09
issued: 2018-11-08
is part of: PeerJ
license: http://creativecommons.org/licenses/by/4.0/
author list: Agent
  family name: Gatter
  given name: Ricarda
author list: Agent
  family name: Cavalli
  given name: Marco
author list: Agent
  family name: Crema
  given name: Stefano
author list: Agent
  family name: Bossi
  given name: Giulia
doi: 10.7717/peerj.5903
volume: 6
issn: 2167-8359
publication name: PeerJ
publication date: 2018-11-08
copyright: ©2018 Gatter et al.
attribution name: Gatter et al.

Amphibian life history in a temperate environment of the Mexican Plateau: dimorphism, phenology and trophic ecology of a hylid frog, Hyla eximia (=Dryophytes eximius)
type: item
type: AcademicArticle
description: The study of demographic and life history aspects of an organism provides valuable information for its conservation. Here, we analyze the phenology of the Mountain Treefrog Hyla eximia (= Dryophytes eximius) in a temperate environment of the Mexican Plateau. Females were larger in snout-vent length and body mass than males. The peak period of activity occurred in the rainy season (May–September), with amplexus and egg deposition occurring between June and July, and larval development from July to August. A logistic model best explained observed male growth patterns, while the Von Bertalanffy model better described female growth. Notably, males grew faster than females, although females reached a larger overall body size. The diet of this species is made up of 10 prey categories. The index of diet importance indicated that males feed mainly on Coleoptera and Diptera, while females feed on Coleoptera, Diptera, Hemiptera, and Aranea. Both females and males showed a significant abundance of plant material in their stomachs, suggesting that H. eximia might exhibit highly specialized feeding behavior. Reproduction was seasonal, and both female and male reproductive cycles are synchronized with the rainy season. These natural history characteristics provide information to better understand their responses to environmental conditions.
format: application/pdf
format: text/html
creator: Uriel Hernández-Salinas
creator: Aurelio Ramírez-Bautista
creator: Barry P. Stephenson
creator: Raciel Cruz-Elizalde
creator: Christian Berriozabal-Islas
creator: Carlos Jesús Balderas-Valdivia
subject: Animal Behavior
subject: Biodiversity
subject: Ecology
subject: Ecohydrology
description: doi:10.7717/peerj.5897
publisher: PeerJ Inc.
rights: © 2018 Hernández-Salinas et al.
abstract: The study of demographic and life history aspects of an organism provides valuable information for its conservation. Here, we analyze the phenology of the Mountain Treefrog Hyla eximia (= Dryophytes eximius) in a temperate environment of the Mexican Plateau. Females were larger in snout-vent length and body mass than males. The peak period of activity occurred in the rainy season (May–September), with amplexus and egg deposition occurring between June and July, and larval development from July to August. A logistic model best explained observed male growth patterns, while the Von Bertalanffy model better described female growth. Notably, males grew faster than females, although females reached a larger overall body size. The diet of this species is made up of 10 prey categories. The index of diet importance indicated that males feed mainly on Coleoptera and Diptera, while females feed on Coleoptera, Diptera, Hemiptera, and Aranea. Both females and males showed a significant abundance of plant material in their stomachs, suggesting that H. eximia might exhibit highly specialized feeding behavior. Reproduction was seasonal, and both female and male reproductive cycles are synchronized with the rainy season. These natural history characteristics provide information to better understand their responses to environmental conditions.
bibliographic citation: Hernández-Salinas et al. (2018) Amphibian life history in a temperate environment of the Mexican Plateau: dimorphism, phenology and trophic ecology of a hylid frog, Hyla eximia (=Dryophytes eximius). PeerJ 6:e5897 https://doi.org/10.7717/peerj.5897
date submitted: 2018-04-26
date accepted: 2018-10-06
issued: 2018-11-08
is part of: PeerJ
license: http://creativecommons.org/licenses/by/4.0/
author list: Agent
  family name: Hernández-Salinas
  given name: Uriel
author list: Agent
  family name: Ramírez-Bautista
  given name: Aurelio
author list: Agent
  family name: Stephenson
  given name: Barry P.
author list: Agent
  family name: Cruz-Elizalde
  given name: Raciel
author list: Agent
  family name: Berriozabal-Islas
  given name: Christian
author list: Agent
  family name: Jesús Balderas-Valdivia
  given name: Carlos
doi: 10.7717/peerj.5897
volume: 6
issn: 2167-8359
publication name: PeerJ
publication date: 2018-11-08
copyright: © 2018 Hernández-Salinas et al.
attribution name: Hernández-Salinas et al.

Changes in stigma and help-seeking in relation to postpartum depression: non-clinical parenting intervention sample
type: item
type: AcademicArticle
description: Postpartum depression (PPD) is a prevalent mental illness affecting women, and less commonly, men in the weeks and months after giving birth. Despite the high incidence of PPD in Australia, rates for help-seeking remain low, with stigma and discrimination frequently cited as the most common deterrents to seeking help from a professional source. The present study sought to investigate PPD stigma in a sample of parents and to examine the effects of an intervention on stigma and help-seeking behaviour. A total of 212 parents aged 18–71 years (M = 36.88, 194 females) completed measures of personal and perceived PPD stigma and attitudes towards seeking mental health services and were randomly assigned to one of four groups: an intervention group (video documentary or factsheet related to PPD) or a control group (video documentary or factsheet not related to PPD). Results showed that there were no effects for type of intervention on either personal or perceived PPD stigma scores. No effect was found for help-seeking propensity. Males had higher personal PPD stigma than females and older age was associated with lower personal PPD stigma. Familiarity with PPD was associated with perceived PPD stigma in others but not personal PPD stigma. More work needs to be conducted to develop interventions to reduce PPD stigma in the community.
format: application/pdf
format: text/html
creator: Einar B. Thorsteinsson
creator: Natasha M. Loi
creator: Kathryn Farr
subject: Psychiatry and Psychology
subject: Women’s Health
description: doi:10.7717/peerj.5893
publisher: PeerJ Inc.
rights: © 2018 Thorsteinsson, Loi & Farr
abstract: Postpartum depression (PPD) is a prevalent mental illness affecting women, and less commonly, men in the weeks and months after giving birth. Despite the high incidence of PPD in Australia, rates for help-seeking remain low, with stigma and discrimination frequently cited as the most common deterrents to seeking help from a professional source. The present study sought to investigate PPD stigma in a sample of parents and to examine the effects of an intervention on stigma and help-seeking behaviour. A total of 212 parents aged 18–71 years (M = 36.88, 194 females) completed measures of personal and perceived PPD stigma and attitudes towards seeking mental health services and were randomly assigned to one of four groups: an intervention group (video documentary or factsheet related to PPD) or a control group (video documentary or factsheet not related to PPD). Results showed that there were no effects for type of intervention on either personal or perceived PPD stigma scores. No effect was found for help-seeking propensity. Males had higher personal PPD stigma than females and older age was associated with lower personal PPD stigma. Familiarity with PPD was associated with perceived PPD stigma in others but not personal PPD stigma. More work needs to be conducted to develop interventions to reduce PPD stigma in the community.
bibliographic citation: Thorsteinsson et al. (2018) Changes in stigma and help-seeking in relation to postpartum depression: non-clinical parenting intervention sample. PeerJ 6:e5893 https://doi.org/10.7717/peerj.5893
date submitted: 2018-07-25
date accepted: 2018-10-08
issued: 2018-11-08
is part of: PeerJ
license: http://creativecommons.org/licenses/by/4.0/
author list: Agent
  family name: Thorsteinsson
  given name: Einar B.
author list: Agent
  family name: Loi
  given name: Natasha M.
author list: Agent
  family name: Farr
  given name: Kathryn
doi: 10.7717/peerj.5893
volume: 6
issn: 2167-8359
publication name: PeerJ
publication date: 2018-11-08
copyright: © 2018 Thorsteinsson et al.
attribution name: Thorsteinsson, Loi & Farr

Cancer and mTOR inhibitors in kidney transplantation recipients
type: item
type: AcademicArticle
description: Background Previous studies show that mTOR inhibitors decrease the risk of cancer development after kidney transplantation. However, the effect of cumulative doses of mTOR inhibitors on cancer after kidney transplantation is not well known. Methods In the current study, patients were registered into a national database in Taiwan. Between year 2000 and 2013, 4,563 patients received kidney transplantation. They were divided into two groups, according to mTOR inhibitors usage. The cumulative dose of mTOR inhibitors was recorded. Patients were followed-up until de novo cancer development, death, or the end of 2014. Results Patients were divided into two groups: mTOR inhibitors users (study group, n = 828) and mTOR inhibitors non-users (control group, n = 3,735). The median follow-up duration was 7.8 years. The risk of de novo cancer (hazards ratio (HR) 0.80, 95% CI [0.60–1.09], p = 0.16) and risk of death (HR 1.14, 95% CI [0.82–1.60], p = 0.43) was not different between mTOR inhibitor user and non-user groups. Neither high- nor low-dose exposure to mTOR inhibitors was associated with increased risk of cancer or mortality. Analysis of cancer subtypes showed no influence by mTOR inhibitors. In addition, the cause of mortality was not significantly different between the two groups. Discussion We could not find the association of mTOR inhibitors use and risk of de novo cancer development or mortality in patients with kidney transplantation in Chinese patients. Cumulative exposure to mTOR inhibitors did not change the results.
format: application/pdf
format: text/html
creator: Chih-Chin Kao
creator: Jia-Sin Liu
creator: Yu-Kang Chang
creator: Ming-Huang Lin
creator: Yen-Chung Lin
creator: Hsi-Hsien Chen
creator: Wei-Chiao Chang
creator: Chih-Cheng Hsu
creator: Mai-Szu Wu
subject: Internal Medicine
subject: Oncology
description: doi:10.7717/peerj.5864
publisher: PeerJ Inc.
rights: © 2018 Kao et al.
abstract: Background Previous studies show that mTOR inhibitors decrease the risk of cancer development after kidney transplantation. However, the effect of cumulative doses of mTOR inhibitors on cancer after kidney transplantation is not well known. Methods In the current study, patients were registered into a national database in Taiwan. Between year 2000 and 2013, 4,563 patients received kidney transplantation. They were divided into two groups, according to mTOR inhibitors usage. The cumulative dose of mTOR inhibitors was recorded. Patients were followed-up until de novo cancer development, death, or the end of 2014. Results Patients were divided into two groups: mTOR inhibitors users (study group, n = 828) and mTOR inhibitors non-users (control group, n = 3,735). The median follow-up duration was 7.8 years. The risk of de novo cancer (hazards ratio (HR) 0.80, 95% CI [0.60–1.09], p = 0.16) and risk of death (HR 1.14, 95% CI [0.82–1.60], p = 0.43) was not different between mTOR inhibitor user and non-user groups. Neither high- nor low-dose exposure to mTOR inhibitors was associated with increased risk of cancer or mortality. Analysis of cancer subtypes showed no influence by mTOR inhibitors. In addition, the cause of mortality was not significantly different between the two groups. Discussion We could not find the association of mTOR inhibitors use and risk of de novo cancer development or mortality in patients with kidney transplantation in Chinese patients. Cumulative exposure to mTOR inhibitors did not change the results.
bibliographic citation: Kao et al. (2018) Cancer and mTOR inhibitors in kidney transplantation recipients. PeerJ 6:e5864 https://doi.org/10.7717/peerj.5864
date submitted: 2018-04-24
date accepted: 2018-10-03
issued: 2018-11-08
is part of: PeerJ
license: http://creativecommons.org/licenses/by/4.0/
author list: Agent
  family name: Kao
  given name: Chih-Chin
author list: Agent
  family name: Liu
  given name: Jia-Sin
author list: Agent
  family name: Chang
  given name: Yu-Kang
author list: Agent
  family name: Lin
  given name: Ming-Huang
author list: Agent
  family name: Lin
  given name: Yen-Chung
author list: Agent
  family name: Chen
  given name: Hsi-Hsien
author list: Agent
  family name: Chang
  given name: Wei-Chiao
author list: Agent
  family name: Hsu
  given name: Chih-Cheng
author list: Agent
  family name: Wu
  given name: Mai-Szu
doi: 10.7717/peerj.5864
volume: 6
issn: 2167-8359
publication name: PeerJ
publication date: 2018-11-08
copyright: © 2018 Kao et al.
attribution name: Kao et al.

A taxonomically and geographically constrained information base limits non-native reptile and amphibian risk assessment: a systematic review
type: item
type: AcademicArticle
description: For many taxa, new records of non-native introductions globally occur at a near exponential rate. We undertook a systematic review of peer-reviewed publications on non-native herpetofauna, to assess the information base available for assessing risks of future invasions, resulting in 836 relevant papers. The taxonomic and geographic scope of the literature was also compared to a published database of all known invasions globally. We found 1,116 species of herpetofauna, 95% of which were present in fewer than 12 studies. Nearly all literature on the invasion ecology of herpetofauna has appeared since 2000, with a strong focus on frogs (58%), particularly cane toads (Rhinella marina) and their impacts in Australia. While fewer papers have been published on turtles and snakes, proportionately more species from both these groups have been studied than for frogs. Within each herpetofaunal group, there are a handful of well-studied species: R. marina, Lithobates catesbeianus, Xenopus laevis, Trachemys scripta, Boiga irregularis and Anolis sagrei. Most research (416 papers; 50%) has addressed impacts, with far fewer studies on aspects like trade (2%). Besides Australia (213 studies), most countries have little location-specific peer-reviewed literature on non-native herpetofauna (on average 1.1 papers per established species). Other exceptions were Guam, the UK, China, California and France, but even their publication coverage across established species was not even. New methods for assessing and prioritizing invasive species such as the Environmental Impact Classification for Alien Taxa provide useful frameworks for risk assessment, but require robust species-level studies. Global initiatives, similar to the Global Amphibian Assessment, using the species and taxonomic groups identified here, are needed to derive the level of information across broad geographic ranges required to apply these frameworks. Expansive studies on model species can be used to indicate productive r…
format: application/pdf
format: text/html
creator: Nicola J. van Wilgen
creator: Micaela S. Gillespie
creator: David M. Richardson
creator: John Measey
subject: Ecology
subject: Zoology
description: doi:10.7717/peerj.5850
publisher: PeerJ Inc.
rights: © 2018 van Wilgen et al.
abstract: For many taxa, new records of non-native introductions globally occur at a near exponential rate. We undertook a systematic review of peer-reviewed publications on non-native herpetofauna, to assess the information base available for assessing risks of future invasions, resulting in 836 relevant papers. The taxonomic and geographic scope of the literature was also compared to a published database of all known invasions globally. We found 1,116 species of herpetofauna, 95% of which were present in fewer than 12 studies. Nearly all literature on the invasion ecology of herpetofauna has appeared since 2000, with a strong focus on frogs (58%), particularly cane toads (Rhinella marina) and their impacts in Australia. While fewer papers have been published on turtles and snakes, proportionately more species from both these groups have been studied than for frogs. Within each herpetofaunal group, there are a handful of well-studied species: R. marina, Lithobates catesbeianus, Xenopus laevis, Trachemys scripta, Boiga irregularis and Anolis sagrei. Most research (416 papers; 50%) has addressed impacts, with far fewer studies on aspects like trade (2%). Besides Australia (213 studies), most countries have little location-specific peer-reviewed literature on non-native herpetofauna (on average 1.1 papers per established species). Other exceptions were Guam, the UK, China, California and France, but even their publication coverage across established species was not even. New methods for assessing and prioritizing invasive species such as the Environmental Impact Classification for Alien Taxa provide useful frameworks for risk assessment, but require robust species-level studies. Global initiatives, similar to the Global Amphibian Assessment, using the species and taxonomic groups identified here, are needed to derive the level of information across broad geographic ranges required to apply these frameworks. Expansive studies on model species can be used to indicate productive r…
bibliographic citation: van Wilgen et al. (2018) A taxonomically and geographically constrained information base limits non-native reptile and amphibian risk assessment: a systematic review. PeerJ 6:e5850 https://doi.org/10.7717/peerj.5850
date submitted: 2018-05-02
date accepted: 2018-09-27
issued: 2018-11-08
is part of: PeerJ
license: http://creativecommons.org/licenses/by/4.0/
author list: Agent
  family name: van Wilgen
  given name: Nicola J.
author list: Agent
  family name: Gillespie
  given name: Micaela S.
author list: Agent
  family name: Richardson
  given name: David M.
author list: Agent
  family name: Measey
  given name: John
doi: 10.7717/peerj.5850
volume: 6
issn: 2167-8359
publication name: PeerJ
publication date: 2018-11-08
copyright: © 2018 van Wilgen et al.
attribution name: van Wilgen et al.

Analytical CPG model driven by limb velocity input generates accurate temporal locomotor dynamics
type: item
type: AcademicArticle
description: The ability of vertebrates to generate rhythm within their spinal neural networks is essential for walking, running, and other rhythmic behaviors. The central pattern generator (CPG) network responsible for these behaviors is well-characterized with experimental and theoretical studies, and it can be formulated as a nonlinear dynamical system. The underlying mechanism responsible for locomotor behavior can be expressed as the process of leaky integration with resetting states generating appropriate phases for changing body velocity. The low-dimensional input to the CPG model generates the bilateral pattern of swing and stance modulation for each limb and is consistent with the desired limb speed as the input command. To test the minimal configuration of required parameters for this model, we reduced the system of equations representing CPG for a single limb and provided the analytical solution with two complementary methods. The analytical and empirical cycle durations were similar (R2 = 0.99) for the full range of walking speeds. The structure of solution is consistent with the use of limb speed as the input domain for the CPG network. Moreover, the reciprocal interaction between two leaky integration processes representing a CPG for two limbs was sufficient to capture fundamental experimental dynamics associated with the control of heading direction. This analysis provides further support for the embedded velocity or limb speed representation within spinal neural pathways involved in rhythm generation.
format: application/pdf
format: text/html
creator: Sergiy Yakovenko
creator: Anton Sobinov
creator: Valeriya Gritsenko
subject: Animal Behavior
subject: Bioinformatics
subject: Computational Biology
subject: Neuroscience
subject: Computational Science
description: doi:10.7717/peerj.5849
publisher: PeerJ Inc.
rights: © 2018 Yakovenko et al.
abstract: The ability of vertebrates to generate rhythm within their spinal neural networks is essential for walking, running, and other rhythmic behaviors. The central pattern generator (CPG) network responsible for these behaviors is well-characterized with experimental and theoretical studies, and it can be formulated as a nonlinear dynamical system. The underlying mechanism responsible for locomotor behavior can be expressed as the process of leaky integration with resetting states generating appropriate phases for changing body velocity. The low-dimensional input to the CPG model generates the bilateral pattern of swing and stance modulation for each limb and is consistent with the desired limb speed as the input command. To test the minimal configuration of required parameters for this model, we reduced the system of equations representing CPG for a single limb and provided the analytical solution with two complementary methods. The analytical and empirical cycle durations were similar (R2 = 0.99) for the full range of walking speeds. The structure of solution is consistent with the use of limb speed as the input domain for the CPG network. Moreover, the reciprocal interaction between two leaky integration processes representing a CPG for two limbs was sufficient to capture fundamental experimental dynamics associated with the control of heading direction. This analysis provides further support for the embedded velocity or limb speed representation within spinal neural pathways involved in rhythm generation.
bibliographic citation: Yakovenko et al. (2018) Analytical CPG model driven by limb velocity input generates accurate temporal locomotor dynamics. PeerJ 6:e5849 https://doi.org/10.7717/peerj.5849
date submitted: 2018-03-19
date accepted: 2018-10-01
issued: 2018-11-08
is part of: PeerJ
license: http://creativecommons.org/licenses/by/4.0/
author list: Agent
  family name: Yakovenko
  given name: Sergiy
author list: Agent
  family name: Sobinov
  given name: Anton
author list: Agent
  family name: Gritsenko
  given name: Valeriya
doi: 10.7717/peerj.5849
volume: 6
issn: 2167-8359
publication name: PeerJ
publication date: 2018-11-08
copyright: ©2018 Yakovenko et al.
attribution name: Yakovenko et al.

The addition of very light loads into the routine testing of the bench press increases the reliability of the force–velocity relationship
type: item
type: AcademicArticle
description: Background The aim of this study was to examine whether the addition of very light loads for modeling the force–velocity (F–V) relationship during the bench press (BP) exercise can confirm its experimental linearity as well as to increase the reliability and concurrent validity of the F–V relationship parameters (maximum force (F0), maximum velocity (V0), F–V slope, and maximum power (Pmax)). Method The F–V relationship of 19 healthy men were determined using three different methods: (I) 6-loads free method: six loads performed during the traditional free-weight BP exercise (≈ 1–8–29–39–49–59 kg), (II) 4-loads free method: four loads performed during the traditional free-weight BP exercise (≈ 29–39–49–59 kg), and (III) 4-loads Smith method: four loads performed during the ballistic bench press throw exercise in a Smith machine (≈ 29–39–49–59 kg). Results The linearity of the F–V relationship was very high and comparable for the three F–V methods (p = 0.204; median Pearson’s correlation coefficient (r) = 0.99). The three methods were ranked from the most to the least reliable as follows: 6-loads free (coefficient of variation (CV) range = 3.6–6.7%) > 4-loads Smith (CV range = 4.6–12.4%) > 4-loads free (CV range = 3.8–14.5%). The higher reliability of the 6-loads free method was especially pronounced for F–V slope (CVratio ≥ 1.85) and V0 (CVratio ≥ 1.49) parameters, while the lowest difference in reliability was observed for F0 (CVratio ≤ 1.27). The 6-loads free and 4-loads free methods showed a very high concurrent validity respect to the 4-loads Smith method for F0 and Pmax (r ≥ 0.89), a moderate validity for the F–V slope (r = 0.66–0.82), and a low validity for V0 (r ≤ 0.37). Discussion The routine testing of the F–V relationship of upper-body muscles through the BP exercise should include trials with very light loading conditions to enhance the reliability of the F–V relationship.
format: application/pdf
format: text/html
creator: Jesualdo Cuevas-Aburto
creator: David Ulloa-Díaz
creator: Paola Barboza-González
creator: Luis Javier Chirosa-Ríos
creator: Amador García-Ramos
subject: Kinesiology
subject: Science and Medical Education
description: doi:10.7717/peerj.5835
publisher: PeerJ Inc.
rights: © 2018 Cuevas-Aburto et al.
abstract: Background The aim of this study was to examine whether the addition of very light loads for modeling the force–velocity (F–V) relationship during the bench press (BP) exercise can confirm its experimental linearity as well as to increase the reliability and concurrent validity of the F–V relationship parameters (maximum force (F0), maximum velocity (V0), F–V slope, and maximum power (Pmax)). Method The F–V relationship of 19 healthy men were determined using three different methods: (I) 6-loads free method: six loads performed during the traditional free-weight BP exercise (≈ 1–8–29–39–49–59 kg), (II) 4-loads free method: four loads performed during the traditional free-weight BP exercise (≈ 29–39–49–59 kg), and (III) 4-loads Smith method: four loads performed during the ballistic bench press throw exercise in a Smith machine (≈ 29–39–49–59 kg). Results The linearity of the F–V relationship was very high and comparable for the three F–V methods (p = 0.204; median Pearson’s correlation coefficient (r) = 0.99). The three methods were ranked from the most to the least reliable as follows: 6-loads free (coefficient of variation (CV) range = 3.6–6.7%) > 4-loads Smith (CV range = 4.6–12.4%) > 4-loads free (CV range = 3.8–14.5%). The higher reliability of the 6-loads free method was especially pronounced for F–V slope (CVratio ≥ 1.85) and V0 (CVratio ≥ 1.49) parameters, while the lowest difference in reliability was observed for F0 (CVratio ≤ 1.27). The 6-loads free and 4-loads free methods showed a very high concurrent validity respect to the 4-loads Smith method for F0 and Pmax (r ≥ 0.89), a moderate validity for the F–V slope (r = 0.66–0.82), and a low validity for V0 (r ≤ 0.37). Discussion The routine testing of the F–V relationship of upper-body muscles through the BP exercise should include trials with very light loading conditions to enhance the reliability of the F–V relationship.
bibliographic citation: Cuevas-Aburto et al. (2018) The addition of very light loads into the routine testing of the bench press increases the reliability of the force–velocity relationship. PeerJ 6:e5835 https://doi.org/10.7717/peerj.5835
date submitted: 2018-06-03
date accepted: 2018-09-27
issued: 2018-11-08
is part of: PeerJ
license: http://creativecommons.org/licenses/by/4.0/
author list: Agent
  family name: Cuevas-Aburto
  given name: Jesualdo
author list: Agent
  family name: Ulloa-Díaz
  given name: David
author list: Agent
  family name: Barboza-González
  given name: Paola
author list: Agent
  family name: Chirosa-Ríos
  given name: Luis Javier
author list: Agent
  family name: García-Ramos
  given name: Amador
doi: 10.7717/peerj.5835
volume: 6
issn: 2167-8359
publication name: PeerJ
publication date: 2018-11-08
copyright: © 2018 Cuevas-Aburto et al.
attribution name: Cuevas-Aburto et al.

Wild bees of Grand Staircase-Escalante National Monument: richness, abundance, and spatio-temporal beta-diversity
type: item
type: AcademicArticle
description: Interest in bees has grown dramatically in recent years in light of several studies that have reported widespread declines in bees and other pollinators. Investigating declines in wild bees can be difficult, however, due to the lack of faunal surveys that provide baseline data of bee richness and diversity. Protected lands such as national monuments and national parks can provide unique opportunities to learn about and monitor bee populations dynamics in a natural setting because the opportunity for large-scale changes to the landscape are reduced compared to unprotected lands. Here we report on a 4-year study of bees in Grand Staircase-Escalante National Monument (GSENM), found in southern Utah, USA. Using opportunistic collecting and a series of standardized plots, we collected bees throughout the six-month flowering season for four consecutive years. In total, 660 bee species are now known from the area, across 55 genera, and including 49 new species. Two genera not previously known to occur in the state of Utah were discovered, as well as 16 new species records for the state. Bees include ground-nesters, cavity- and twig-nesters, cleptoparasites, narrow specialists, generalists, solitary, and social species. The bee fauna reached peak diversity each spring, but also experienced a second peak in diversity in late summer, following monsoonal rains. The majority of GSENM’s bees are highly localized, occurring in only a few locations throughout the monument, and often in low abundance, but consistently across the four years. Only a few species are widespread and super-abundant. Certain flowering plants appear to be inordinately attractive to the bees in GSENM, including several invasive species. GSENM protects one of the richest bee faunas in the west; the large elevational gradient, incredible number of flowering plants, and the mosaic of habitats are all likely contributors to this rich assemblage of bees.
format: application/pdf
format: text/html
creator: Olivia Messinger Carril
creator: Terry Griswold
creator: James Haefner
creator: Joseph S. Wilson
subject: Biogeography
subject: Conservation Biology
subject: Ecology
subject: Entomology
description: doi:10.7717/peerj.5867
publisher: PeerJ Inc.
rights: © 2018
abstract: Interest in bees has grown dramatically in recent years in light of several studies that have reported widespread declines in bees and other pollinators. Investigating declines in wild bees can be difficult, however, due to the lack of faunal surveys that provide baseline data of bee richness and diversity. Protected lands such as national monuments and national parks can provide unique opportunities to learn about and monitor bee populations dynamics in a natural setting because the opportunity for large-scale changes to the landscape are reduced compared to unprotected lands. Here we report on a 4-year study of bees in Grand Staircase-Escalante National Monument (GSENM), found in southern Utah, USA. Using opportunistic collecting and a series of standardized plots, we collected bees throughout the six-month flowering season for four consecutive years. In total, 660 bee species are now known from the area, across 55 genera, and including 49 new species. Two genera not previously known to occur in the state of Utah were discovered, as well as 16 new species records for the state. Bees include ground-nesters, cavity- and twig-nesters, cleptoparasites, narrow specialists, generalists, solitary, and social species. The bee fauna reached peak diversity each spring, but also experienced a second peak in diversity in late summer, following monsoonal rains. The majority of GSENM’s bees are highly localized, occurring in only a few locations throughout the monument, and often in low abundance, but consistently across the four years. Only a few species are widespread and super-abundant. Certain flowering plants appear to be inordinately attractive to the bees in GSENM, including several invasive species. GSENM protects one of the richest bee faunas in the west; the large elevational gradient, incredible number of flowering plants, and the mosaic of habitats are all likely contributors to this rich assemblage of bees.
bibliographic citation: Carril et al. (2018) Wild bees of Grand Staircase-Escalante National Monument: richness, abundance, and spatio-temporal beta-diversity. PeerJ 6:e5867 https://doi.org/10.7717/peerj.5867
date submitted: 2018-03-12
date accepted: 2018-10-03
issued: 2018-11-07
is part of: PeerJ
license: http://creativecommons.org/publicdomain/zero/1.0/
author list: Agent
  family name: Carril
  given name: Olivia Messinger
author list: Agent
  family name: Griswold
  given name: Terry
author list: Agent
  family name: Haefner
  given name: James
author list: Agent
  family name: Wilson
  given name: Joseph S.
doi: 10.7717/peerj.5867
volume: 6
issn: 2167-8359
publication name: PeerJ
publication date: 2018-11-07

PeerJ
type: Periodical
uri: PeerJ
issn: 2167-8359