PeerJ:Ecosystem Sciencehttps://peerj.com/articles/index.atom?journal=peerj&subject=1200Ecosystem Science articles published in PeerJLand potential assessment and trend-analysis using 2000–2021 FAPAR monthly time-series at 250 m spatial resolutionhttps://peerj.com/articles/169722024-03-132024-03-13Julia HackländerLeandro ParenteYu-Feng HoTomislav HenglRolf SimoesDavide ConsoliMurat ŞahinXuemeng TianMartin JungMartin HeroldGregory DuveillerMelanie WeynantsIchsani Wheeler
The article presents results of using remote sensing images and machine learning to map and assess land potential based on time-series of potential Fraction of Absorbed Photosynthetically Active Radiation (FAPAR) composites. Land potential here refers to the potential vegetation productivity in the hypothetical absence of short–term anthropogenic influence, such as intensive agriculture and urbanization. Knowledge on this ecological land potential could support the assessment of levels of land degradation as well as restoration potentials. Monthly aggregated FAPAR time-series of three percentiles (0.05, 0.50 and 0.95 probability) at 250 m spatial resolution were derived from the 8-day GLASS FAPAR V6 product for 2000–2021 and used to determine long-term trends in FAPAR, as well as to model potential FAPAR in the absence of human pressure. CCa 3 million training points sampled from 12,500 locations across the globe were overlaid with 68 bio-physical variables representing climate, terrain, landform, and vegetation cover, as well as several variables representing human pressure including: population count, cropland intensity, nightlights and a human footprint index. The training points were used in an ensemble machine learning model that stacks three base learners (extremely randomized trees, gradient descended trees and artificial neural network) using a linear regressor as meta-learner. The potential FAPAR was then projected by removing the impact of urbanization and intensive agriculture in the covariate layers. The results of strict cross-validation show that the global distribution of FAPAR can be explained with an R2 of 0.89, with the most important covariates being growing season length, forest cover indicator and annual precipitation. From this model, a global map of potential monthly FAPAR for the recent year (2021) was produced, and used to predict gaps in actual vs. potential FAPAR. The produced global maps of actual vs. potential FAPAR and long-term trends were each spatially matched with stable and transitional land cover classes. The assessment showed large negative FAPAR gaps (actual lower than potential) for classes: urban, needle-leave deciduous trees, and flooded shrub or herbaceous cover, while strong negative FAPAR trends were found for classes: urban, sparse vegetation and rainfed cropland. On the other hand, classes: irrigated or post-flooded cropland, tree cover mixed leaf type, and broad-leave deciduous showed largely positive trends. The framework allows land managers to assess potential land degradation from two aspects: as an actual declining trend in observed FAPAR and as a difference between actual and potential vegetation FAPAR.
The article presents results of using remote sensing images and machine learning to map and assess land potential based on time-series of potential Fraction of Absorbed Photosynthetically Active Radiation (FAPAR) composites. Land potential here refers to the potential vegetation productivity in the hypothetical absence of short–term anthropogenic influence, such as intensive agriculture and urbanization. Knowledge on this ecological land potential could support the assessment of levels of land degradation as well as restoration potentials. Monthly aggregated FAPAR time-series of three percentiles (0.05, 0.50 and 0.95 probability) at 250 m spatial resolution were derived from the 8-day GLASS FAPAR V6 product for 2000–2021 and used to determine long-term trends in FAPAR, as well as to model potential FAPAR in the absence of human pressure. CCa 3 million training points sampled from 12,500 locations across the globe were overlaid with 68 bio-physical variables representing climate, terrain, landform, and vegetation cover, as well as several variables representing human pressure including: population count, cropland intensity, nightlights and a human footprint index. The training points were used in an ensemble machine learning model that stacks three base learners (extremely randomized trees, gradient descended trees and artificial neural network) using a linear regressor as meta-learner. The potential FAPAR was then projected by removing the impact of urbanization and intensive agriculture in the covariate layers. The results of strict cross-validation show that the global distribution of FAPAR can be explained with an R2 of 0.89, with the most important covariates being growing season length, forest cover indicator and annual precipitation. From this model, a global map of potential monthly FAPAR for the recent year (2021) was produced, and used to predict gaps in actual vs. potential FAPAR. The produced global maps of actual vs. potential FAPAR and long-term trends were each spatially matched with stable and transitional land cover classes. The assessment showed large negative FAPAR gaps (actual lower than potential) for classes: urban, needle-leave deciduous trees, and flooded shrub or herbaceous cover, while strong negative FAPAR trends were found for classes: urban, sparse vegetation and rainfed cropland. On the other hand, classes: irrigated or post-flooded cropland, tree cover mixed leaf type, and broad-leave deciduous showed largely positive trends. The framework allows land managers to assess potential land degradation from two aspects: as an actual declining trend in observed FAPAR and as a difference between actual and potential vegetation FAPAR.On population structure and breeding biology of burrowing crab Dotilla blanfordi Alcock, 1900https://peerj.com/articles/170652024-03-132024-03-13Krupal PatelHeris PatelDaoud AliSwapnil GosaviNisha ChoudharyVirendra Kumar YadavKauresh VachhrajaniAshish PatelDipak Kumar SahooJigneshkumar Trivedi
Background
The present study investigated the population structure and breeding biology of the burrowing brachyuran crab species Dotilla blanfordi Alcock, 1900, which is commonly found on the sandy beach of Bhavnagar, located on the Gulf of Kachchh, Gujarat coast, India.
Methods
Monthly sampling was conducted from February 2021 to January 2022 at the time of low tide using three line transects perpendicular to the water line, intercepted by a quadrate (0.25 m2) each at three different levels of the middle intertidal region: 20 m, 70 m, and 120 m. The quadrate area was excavated up to 30 cm and sieved for specimen collection. The collected specimens were categorised into different sexes viz., male, non-ovigerous female, or ovigerous female. For the fecundity study of D. blanfordi, the carapace width (mm) as a measure of size as well as their wet weight (g), size, number, and mass of their eggs were also recorded.
Results
The study revealed sexual dimorphism among the population, with females having significantly smaller sizes as compared to males. The overall population was skewed towards females, with a bimodal distribution of males and females. The occurrence of ovigerous females throughout the year suggests that the population breeds incessantly throughout the year, with the highest occurrence in August and September. A positive correlation was observed between the morphology of crabs (carapace width and wet body weight) and the size, number, and mass of eggs.
Background
The present study investigated the population structure and breeding biology of the burrowing brachyuran crab species Dotilla blanfordi Alcock, 1900, which is commonly found on the sandy beach of Bhavnagar, located on the Gulf of Kachchh, Gujarat coast, India.
Methods
Monthly sampling was conducted from February 2021 to January 2022 at the time of low tide using three line transects perpendicular to the water line, intercepted by a quadrate (0.25 m2) each at three different levels of the middle intertidal region: 20 m, 70 m, and 120 m. The quadrate area was excavated up to 30 cm and sieved for specimen collection. The collected specimens were categorised into different sexes viz., male, non-ovigerous female, or ovigerous female. For the fecundity study of D. blanfordi, the carapace width (mm) as a measure of size as well as their wet weight (g), size, number, and mass of their eggs were also recorded.
Results
The study revealed sexual dimorphism among the population, with females having significantly smaller sizes as compared to males. The overall population was skewed towards females, with a bimodal distribution of males and females. The occurrence of ovigerous females throughout the year suggests that the population breeds incessantly throughout the year, with the highest occurrence in August and September. A positive correlation was observed between the morphology of crabs (carapace width and wet body weight) and the size, number, and mass of eggs.Raised water temperature enhances benthopelagic links via intensified bioturbation and benthos-mediated nutrient cyclinghttps://peerj.com/articles/170472024-02-282024-02-28Eilish M. FarrellAndreas NeumannJan BeermannAlexa Wrede
Sediment reworking by benthic infauna, namely bioturbation, is of pivotal importance in expansive soft-sediment environments such as the Wadden Sea. Bioturbating fauna facilitate ecosystem functions such as bentho-pelagic coupling and sediment nutrient remineralization capacities. Yet, these benthic fauna are expected to be profoundly affected by current observed rising sea temperatures. In order to predict future changes in ecosystem functioning in soft-sediment environments like the Wadden Sea, knowledge on the underlying processes such as sediment reworking, is crucial. Here, we tested how temperature affects bioturbation and its associated ecosystem processes, such as benthic nutrient fluxes and sediment oxygen consumption, using luminophore tracers and sediment incubation cores. We used a controlled mesocosm experiment set-up with key Wadden Sea benthos species: the burrowing polychaetes Arenicola marina and Hediste diversicolor, the bivalve Cerastoderma edule, and the tube-building polychaete Lanice conchilega. The highest bioturbation rates were observed from A. marina, reaching up to 375 cm2yr−1; followed by H. diversicolor, with 124 cm2yr−1 being the peak bioturbation rate for the ragworm. Additionally, the sediment reworking activity of A. marina facilitated nearly double the amount of silicate efflux compared to any other species. Arenicola marina and H. diversicolor accordingly facilitated stronger nutrient effluxes under a warmer temperature than L. conchilega and C. edule. The oxygen uptake of A. marina and H. diversicolor within the sediment incubation cores was correspondingly enhanced with a higher temperature. Thus, increases in sea temperatures may initially be beneficial to ecosystem functioning in the Wadden Sea as faunal bioturbation is definitely expedited, leading to a tighter coupling between the sediment and overlying water column. The enhanced bioturbation activity, oxygen consumption, and facilitated nutrient effluxes from these invertebrates themselves, will aid in the ongoing high levels of primary productivity and organic matter production.
Sediment reworking by benthic infauna, namely bioturbation, is of pivotal importance in expansive soft-sediment environments such as the Wadden Sea. Bioturbating fauna facilitate ecosystem functions such as bentho-pelagic coupling and sediment nutrient remineralization capacities. Yet, these benthic fauna are expected to be profoundly affected by current observed rising sea temperatures. In order to predict future changes in ecosystem functioning in soft-sediment environments like the Wadden Sea, knowledge on the underlying processes such as sediment reworking, is crucial. Here, we tested how temperature affects bioturbation and its associated ecosystem processes, such as benthic nutrient fluxes and sediment oxygen consumption, using luminophore tracers and sediment incubation cores. We used a controlled mesocosm experiment set-up with key Wadden Sea benthos species: the burrowing polychaetes Arenicola marina and Hediste diversicolor, the bivalve Cerastoderma edule, and the tube-building polychaete Lanice conchilega. The highest bioturbation rates were observed from A. marina, reaching up to 375 cm2yr−1; followed by H. diversicolor, with 124 cm2yr−1 being the peak bioturbation rate for the ragworm. Additionally, the sediment reworking activity of A. marina facilitated nearly double the amount of silicate efflux compared to any other species. Arenicola marina and H. diversicolor accordingly facilitated stronger nutrient effluxes under a warmer temperature than L. conchilega and C. edule. The oxygen uptake of A. marina and H. diversicolor within the sediment incubation cores was correspondingly enhanced with a higher temperature. Thus, increases in sea temperatures may initially be beneficial to ecosystem functioning in the Wadden Sea as faunal bioturbation is definitely expedited, leading to a tighter coupling between the sediment and overlying water column. The enhanced bioturbation activity, oxygen consumption, and facilitated nutrient effluxes from these invertebrates themselves, will aid in the ongoing high levels of primary productivity and organic matter production.Using vulnerability assessment to characterize coastal protection benefits provided by estuarine habitats of a dynamic intracoastal waterwayhttps://peerj.com/articles/167382024-02-192024-02-19Gregory M. VerutesPhilip F. YangScott F. EastmanCheryl L. DoughtyTherese E. AdgieKaitlyn DietzNicole G. DixAllix NorthGregory GuannelSamantha K. Chapman
The existence of coastal ecosystems depends on their ability to gain sediment and keep pace with sea level rise. Similar to other coastal areas, Northeast Florida (United States) is experiencing rapid population growth, climate change, and shifting wetland communities. Rising seas and more severe storms, coupled with the intensification of human activities, can modify the biophysical environment, thereby increasing coastal exposure to storm-induced erosion and inundation. Using the Guana Tolomato Matanzas National Estuarine Research Reserve as a case study, we analyzed the distribution of coastal protection services–expressly, wave attenuation and sediment control–provided by estuarine habitats inside a dynamic Intracoastal waterway. We explored six coastal variables that contribute to coastal flooding and erosion–(a) relief, (b) geomorphology, (c) estuarine habitats, (d) wind exposure, (e) boat wake energy, and (f) storm surge potential–to assess physical exposure to coastal hazards. The highest levels of coastal exposure were found in the north and south sections of the Reserve (9% and 14%, respectively) compared to only 4% in the central, with exposure in the south driven by low wetland elevation, high surge potential, and shorelines composed of less stable sandy and muddy substrate. The most vulnerable areas of the central Reserve and main channel of the Intracoastal waterway were exposed to boat wakes from larger vessels frequently traveling at medium speeds (10–20 knots) and had shoreline segments oriented towards the prevailing winds (north-northeast). To guide management for the recently expanded Reserve into vulnerable areas near the City of Saint Augustine, we evaluated six sites of concern where the current distribution of estuarine habitats (mangroves, salt marshes, and oyster beds) likely play the greatest role in natural protection. Spatially explicit outputs also identified potential elevation maintenance strategies such as living shorelines, landform modification, and mangrove establishment for providing coastal risk-reduction and other ecosystem-service co-benefits. Salt marshes and mangroves in two sites of the central section (N-312 and S-312) were found to protect more than a one-quarter of their cross-shore length (27% and 73%, respectively) from transitioning to the highest exposure category. Proposed interventions for mangrove establishment and living shorelines could help maintain elevation in these sites of concern. This work sets the stage for additional research, education, and outreach about where mangroves, salt marshes, and oyster beds are most likely to reduce risk to wetland communities in the region.
The existence of coastal ecosystems depends on their ability to gain sediment and keep pace with sea level rise. Similar to other coastal areas, Northeast Florida (United States) is experiencing rapid population growth, climate change, and shifting wetland communities. Rising seas and more severe storms, coupled with the intensification of human activities, can modify the biophysical environment, thereby increasing coastal exposure to storm-induced erosion and inundation. Using the Guana Tolomato Matanzas National Estuarine Research Reserve as a case study, we analyzed the distribution of coastal protection services–expressly, wave attenuation and sediment control–provided by estuarine habitats inside a dynamic Intracoastal waterway. We explored six coastal variables that contribute to coastal flooding and erosion–(a) relief, (b) geomorphology, (c) estuarine habitats, (d) wind exposure, (e) boat wake energy, and (f) storm surge potential–to assess physical exposure to coastal hazards. The highest levels of coastal exposure were found in the north and south sections of the Reserve (9% and 14%, respectively) compared to only 4% in the central, with exposure in the south driven by low wetland elevation, high surge potential, and shorelines composed of less stable sandy and muddy substrate. The most vulnerable areas of the central Reserve and main channel of the Intracoastal waterway were exposed to boat wakes from larger vessels frequently traveling at medium speeds (10–20 knots) and had shoreline segments oriented towards the prevailing winds (north-northeast). To guide management for the recently expanded Reserve into vulnerable areas near the City of Saint Augustine, we evaluated six sites of concern where the current distribution of estuarine habitats (mangroves, salt marshes, and oyster beds) likely play the greatest role in natural protection. Spatially explicit outputs also identified potential elevation maintenance strategies such as living shorelines, landform modification, and mangrove establishment for providing coastal risk-reduction and other ecosystem-service co-benefits. Salt marshes and mangroves in two sites of the central section (N-312 and S-312) were found to protect more than a one-quarter of their cross-shore length (27% and 73%, respectively) from transitioning to the highest exposure category. Proposed interventions for mangrove establishment and living shorelines could help maintain elevation in these sites of concern. This work sets the stage for additional research, education, and outreach about where mangroves, salt marshes, and oyster beds are most likely to reduce risk to wetland communities in the region.Understanding park visitors’ soundscape perception using subjective and objective measurementhttps://peerj.com/articles/165922024-01-312024-01-31Lauren A. FergusonB. Derrick TaffJustine I. BlanfordDaniel J. MennittAndrew J. MowenMitchell LevenhagenCrow WhiteChristopher A. MonzClinton D. FrancisJesse R. BarberPeter Newman
Environmental noise knows no boundaries, affecting even protected areas. Noise pollution, originating from both external and internal sources, imposes costs on these areas. It is associated with adverse health effects, while natural sounds contribute to cognitive and emotional improvements as ecosystem services. When it comes to parks, individual visitors hold unique perceptions of soundscapes, which can be shaped by various factors such as their motivations for visiting, personal norms, attitudes towards specific sounds, and expectations. In this study, we utilized linear models and geospatial data to evaluate how visitors’ personal norms and attitudes, the park’s acoustic environment, visitor counts, and the acoustic environment of visitors’ neighborhoods influenced their perception of soundscapes at Muir Woods National Monument. Our findings indicate that visitors’ subjective experiences had a greater impact on their perception of the park’s soundscape compared to purely acoustic factors like sound level of the park itself. Specifically, we found that motivations to hear natural sounds, interference caused by noise, sensitivity to noise, and the sound levels of visitors’ home neighborhoods influenced visitors’ perception of the park’s soundscape. Understanding how personal factors shape visitors’ soundscape perception can assist urban and non-urban park planners in effectively managing visitor experiences and expectations.
Environmental noise knows no boundaries, affecting even protected areas. Noise pollution, originating from both external and internal sources, imposes costs on these areas. It is associated with adverse health effects, while natural sounds contribute to cognitive and emotional improvements as ecosystem services. When it comes to parks, individual visitors hold unique perceptions of soundscapes, which can be shaped by various factors such as their motivations for visiting, personal norms, attitudes towards specific sounds, and expectations. In this study, we utilized linear models and geospatial data to evaluate how visitors’ personal norms and attitudes, the park’s acoustic environment, visitor counts, and the acoustic environment of visitors’ neighborhoods influenced their perception of soundscapes at Muir Woods National Monument. Our findings indicate that visitors’ subjective experiences had a greater impact on their perception of the park’s soundscape compared to purely acoustic factors like sound level of the park itself. Specifically, we found that motivations to hear natural sounds, interference caused by noise, sensitivity to noise, and the sound levels of visitors’ home neighborhoods influenced visitors’ perception of the park’s soundscape. Understanding how personal factors shape visitors’ soundscape perception can assist urban and non-urban park planners in effectively managing visitor experiences and expectations.Distribution and demographics of mysids (Crustacea: Mysida) as prey for gray whales (Eschrichtius robustus) in northwest Washington statehttps://peerj.com/articles/165872024-01-152024-01-15Elizabeth Marina AllynJonathan J. ScordinoAdrianne M. Akmajian
Background
The movement and distribution of gray whales (Eschrichtius robustus) during the feeding season is likely dependent on the quality of foraging opportunities and the distribution of prey species. These dynamics are especially important to understand for the Pacific Coast Feeding Group (PCFG) of gray whales which spend the feeding season along the coast from northern California, USA through northern British Columbia, Canada. In Washington state, no previous work has been done to describe available gray whale prey. The main goal of this research was to initiate studies on an important gray whale prey item in northwest Washington, mysid shrimp (Mysida), by establishing a baseline understanding of mysid swarm demographics in the area and investigating patterns in gray whale and mysid presence.
Methods
Prey samples were collected during June through November 2019 and June through September 2020 using a vertically-towed plankton net at seven sites in the Strait of Juan de Fuca and seven sites in the Pacific Ocean in areas where gray whales were known to feed. Mysids collected in the samples were counted and the sex, length, species, maturity, and gravidity were documented. Patterns in gray whale and mysid co-occurrence were explored through data visualization.
Results
Seven species of mysids were observed in the survey area. In 2019, the number of mysids per tow increased steadily through the season, the most abundant species of mysids were Holmesimysis sculpta and Neomysis rayii, and sampled mysids averaged 4.7 mm in length. In 2020, mysids were abundant in tow samples in June and July but were not abundant in the remaining months of the sampling season. The average length of mysids in 2020 was 13.3 mm, and a large portion were sexually mature males and brooded females identified as H. sculpta. Throughout the survey area, the majority of whale sightings occurred later in the season in 2019 and earlier in the season in 2020, coinciding with the trends of sampled mysids.
Discussion
This study provides the first description of mysid swarm composition and temporal variation in northwest Washington. Tows were dominated by a similar assemblage of mysid species as what is observed in other areas of the PCFG range. The differences in sampled mysid assemblages between years, and the presence of whales in the survey area in times and at sites where samples with high mysid counts were collected, suggest evidence for interesting predator-prey dynamics that warrant further investigation.
Background
The movement and distribution of gray whales (Eschrichtius robustus) during the feeding season is likely dependent on the quality of foraging opportunities and the distribution of prey species. These dynamics are especially important to understand for the Pacific Coast Feeding Group (PCFG) of gray whales which spend the feeding season along the coast from northern California, USA through northern British Columbia, Canada. In Washington state, no previous work has been done to describe available gray whale prey. The main goal of this research was to initiate studies on an important gray whale prey item in northwest Washington, mysid shrimp (Mysida), by establishing a baseline understanding of mysid swarm demographics in the area and investigating patterns in gray whale and mysid presence.
Methods
Prey samples were collected during June through November 2019 and June through September 2020 using a vertically-towed plankton net at seven sites in the Strait of Juan de Fuca and seven sites in the Pacific Ocean in areas where gray whales were known to feed. Mysids collected in the samples were counted and the sex, length, species, maturity, and gravidity were documented. Patterns in gray whale and mysid co-occurrence were explored through data visualization.
Results
Seven species of mysids were observed in the survey area. In 2019, the number of mysids per tow increased steadily through the season, the most abundant species of mysids were Holmesimysis sculpta and Neomysis rayii, and sampled mysids averaged 4.7 mm in length. In 2020, mysids were abundant in tow samples in June and July but were not abundant in the remaining months of the sampling season. The average length of mysids in 2020 was 13.3 mm, and a large portion were sexually mature males and brooded females identified as H. sculpta. Throughout the survey area, the majority of whale sightings occurred later in the season in 2019 and earlier in the season in 2020, coinciding with the trends of sampled mysids.
Discussion
This study provides the first description of mysid swarm composition and temporal variation in northwest Washington. Tows were dominated by a similar assemblage of mysid species as what is observed in other areas of the PCFG range. The differences in sampled mysid assemblages between years, and the presence of whales in the survey area in times and at sites where samples with high mysid counts were collected, suggest evidence for interesting predator-prey dynamics that warrant further investigation.Species composition, relative abundance, and habitat association of birds in Dodola dry evergreen afro-montane forest and sub-afro-alpine scrubland vegetation, southeast Ethiopiahttps://peerj.com/articles/167752024-01-112024-01-11Zenebe Ageru YilmaGirma MengeshaZerihun Girma
Background
Birds’ functional groups are useful for maintaining fundamental ecological processes, ecosystem services, and economic benefits. Negative consequences of loss of functional groups are substantial. Birds are usually found at a high trophic level in food webs and are relatively sensitive to environmental change.
Methods
The first surveillance bird study was carried out southeast of Ethiopia adjacent to Bale Mountain National Park aimed at investigating the composition, relative abundance, and distribution of Aves. Using regular systematic point transact sampling, the density and species composition were analyzed through the mark recapture distance sampling engine assisted by R statistical software.
Results
This study recorded a total of seventy-eight bird species over two distinct seasons. Among these, fifteen species were exclusive to Erica habitats, twenty-six were found in natural forest habitats, and three were specific to plantation forest habitats. The study also discovered three endemic species. Based on the 2018 IUCN Red List categories, six of the species are globally threatened, three are near threatened, and the remaining sixty-nine are classified as least concern. The relative abundance of birds did not significantly differ across habitats and seasons, but variations were observed among blocks. Bird density was found to fluctuate across the three habitats and two seasons; however, these habitat differences were not influenced by seasonal changes.
Conclusion
The findings of this study reveal that the differences in composition and relative abundance are not merely seasonal changes in the forest and Erica habitats. Instead, these habitats create microclimates that cater to specific bird species. However, this localized endemism also presents challenges. The concentration of endemic species and potential resource constraints could pose a threat to these habitat-specialist birds.
Background
Birds’ functional groups are useful for maintaining fundamental ecological processes, ecosystem services, and economic benefits. Negative consequences of loss of functional groups are substantial. Birds are usually found at a high trophic level in food webs and are relatively sensitive to environmental change.
Methods
The first surveillance bird study was carried out southeast of Ethiopia adjacent to Bale Mountain National Park aimed at investigating the composition, relative abundance, and distribution of Aves. Using regular systematic point transact sampling, the density and species composition were analyzed through the mark recapture distance sampling engine assisted by R statistical software.
Results
This study recorded a total of seventy-eight bird species over two distinct seasons. Among these, fifteen species were exclusive to Erica habitats, twenty-six were found in natural forest habitats, and three were specific to plantation forest habitats. The study also discovered three endemic species. Based on the 2018 IUCN Red List categories, six of the species are globally threatened, three are near threatened, and the remaining sixty-nine are classified as least concern. The relative abundance of birds did not significantly differ across habitats and seasons, but variations were observed among blocks. Bird density was found to fluctuate across the three habitats and two seasons; however, these habitat differences were not influenced by seasonal changes.
Conclusion
The findings of this study reveal that the differences in composition and relative abundance are not merely seasonal changes in the forest and Erica habitats. Instead, these habitats create microclimates that cater to specific bird species. However, this localized endemism also presents challenges. The concentration of endemic species and potential resource constraints could pose a threat to these habitat-specialist birds.Composite environmental indices—a case of rickety rankingshttps://peerj.com/articles/163252023-12-112023-12-11Shelley M. StevensMichael K. JoyWokje AbrahamseTaciano L. MilfontLynda M. Petherick
Composite indices have been widely used to rank the environmental performance of nations. Such environmental indices can be useful in communicating complex information as a single value and have the potential to generate political and media awareness of environmental issues. However, poorly constructed, or poorly communicated indices, can hinder efforts to identify environmental failings, and there are considerable differences in rank among existing environmental indices. Here, we provide a review of the conceptual frameworks and methodological choices used for existing environmental indices to enhance our understanding of their accuracy and applicability. In the present study, we review existing global indices according to their conceptual framework (objectives of the index and set of indicators included) and methodological choices made in their construction (e.g., weighting and aggregation). We examine how differences in conceptual frameworks and methodology may yield a more, or less, optimistic view of a country’s environment. Our results indicate that (1) multidimensional environmental indices with indicators related to human health and welfare or policy are positively correlated; (2) environment-only indices are positively correlated with one another or are not correlated at all; (3) multidimensional indices and environment-only indices are negatively correlated with each other or are not correlated at all. This indicates that the conceptual frameworks and indicators included may influence a country’s rank among different environmental indices. Our results highlight that, when choosing an existing environmental index—or developing a new one—it is important to assess whether the conceptual framework (and associated indicators) and methodological choices are appropriate for the phenomenon being measured and reported on. This is important because the inclusion of confounding indicators in environmental indices may provide a misleading view of the quality of a country’s environment.
Composite indices have been widely used to rank the environmental performance of nations. Such environmental indices can be useful in communicating complex information as a single value and have the potential to generate political and media awareness of environmental issues. However, poorly constructed, or poorly communicated indices, can hinder efforts to identify environmental failings, and there are considerable differences in rank among existing environmental indices. Here, we provide a review of the conceptual frameworks and methodological choices used for existing environmental indices to enhance our understanding of their accuracy and applicability. In the present study, we review existing global indices according to their conceptual framework (objectives of the index and set of indicators included) and methodological choices made in their construction (e.g., weighting and aggregation). We examine how differences in conceptual frameworks and methodology may yield a more, or less, optimistic view of a country’s environment. Our results indicate that (1) multidimensional environmental indices with indicators related to human health and welfare or policy are positively correlated; (2) environment-only indices are positively correlated with one another or are not correlated at all; (3) multidimensional indices and environment-only indices are negatively correlated with each other or are not correlated at all. This indicates that the conceptual frameworks and indicators included may influence a country’s rank among different environmental indices. Our results highlight that, when choosing an existing environmental index—or developing a new one—it is important to assess whether the conceptual framework (and associated indicators) and methodological choices are appropriate for the phenomenon being measured and reported on. This is important because the inclusion of confounding indicators in environmental indices may provide a misleading view of the quality of a country’s environment.An ecological transcriptome approach to capture the molecular and physiological mechanisms of mass flowering in Shorea curtisiihttps://peerj.com/articles/163682023-11-292023-11-29Ahmad Husaini SuhaimiMasaki J. KobayashiAkiko SatakeChing Ching NgSoon Leong LeeNorwati MuhammadShinya NumataTatsuya OtaniToshiaki KondoNaoki TaniSuat Hui Yeoh
Climatic factors have commonly been attributed as the trigger of general flowering, a unique community-level mass flowering phenomenon involving most dipterocarp species that forms the foundation of Southeast Asian tropical rainforests. This intriguing flowering event is often succeeded by mast fruiting, which provides a temporary yet substantial burst of food resources for animals, particularly frugivores. However, the physiological mechanism that triggers general flowering, particularly in dipterocarp species, is not well understood largely due to its irregular and unpredictable occurrences in the tall and dense forests. To shed light on this mechanism, we employed ecological transcriptomic analyses on an RNA-seq dataset of a general flowering species, Shorea curtisii (Dipterocarpaceae), sequenced from leaves and buds collected at multiple vegetative and flowering phenological stages. We assembled 64,219 unigenes from the transcriptome of which 1,730 and 3,559 were differentially expressed in the leaf and the bud, respectively. Differentially expressed unigene clusters were found to be enriched with homologs of Arabidopsis thaliana genes associated with response to biotic and abiotic stresses, nutrient level, and hormonal treatments. When combined with rainfall data, our transcriptome data reveals that the trees were responding to a brief period of drought prior to the elevated expression of key floral promoters and followed by differential expression of unigenes that indicates physiological changes associated with the transition from vegetative to reproductive stages. Our study is timely for a representative general flowering dipterocarp species that occurs in forests that are under the constant threat of deforestation and climate change as it pinpoints important climate sensitive and flowering-related homologs and offers a glimpse into the cascade of gene expression before and after the onset of floral initiation.
Climatic factors have commonly been attributed as the trigger of general flowering, a unique community-level mass flowering phenomenon involving most dipterocarp species that forms the foundation of Southeast Asian tropical rainforests. This intriguing flowering event is often succeeded by mast fruiting, which provides a temporary yet substantial burst of food resources for animals, particularly frugivores. However, the physiological mechanism that triggers general flowering, particularly in dipterocarp species, is not well understood largely due to its irregular and unpredictable occurrences in the tall and dense forests. To shed light on this mechanism, we employed ecological transcriptomic analyses on an RNA-seq dataset of a general flowering species, Shorea curtisii (Dipterocarpaceae), sequenced from leaves and buds collected at multiple vegetative and flowering phenological stages. We assembled 64,219 unigenes from the transcriptome of which 1,730 and 3,559 were differentially expressed in the leaf and the bud, respectively. Differentially expressed unigene clusters were found to be enriched with homologs of Arabidopsis thaliana genes associated with response to biotic and abiotic stresses, nutrient level, and hormonal treatments. When combined with rainfall data, our transcriptome data reveals that the trees were responding to a brief period of drought prior to the elevated expression of key floral promoters and followed by differential expression of unigenes that indicates physiological changes associated with the transition from vegetative to reproductive stages. Our study is timely for a representative general flowering dipterocarp species that occurs in forests that are under the constant threat of deforestation and climate change as it pinpoints important climate sensitive and flowering-related homologs and offers a glimpse into the cascade of gene expression before and after the onset of floral initiation.Using transplantation to restore seagrass meadows in a protected South African lagoonhttps://peerj.com/articles/165002023-11-292023-11-29Katie M. WatsonDeena PillaySophie von der Heyden
Background
Seagrass meadows provide valuable ecosystem services but are threatened by global change pressures, and there is growing concern that the functions seagrasses perform within an ecosystem will be reduced or lost without intervention. Restoration has become an integral part of coastal management in response to major seagrass declines, but is often context dependent, requiring an assessment of methods to maximise restoration success. Here we investigate the use of different restoration strategies for the endangered Zostera capensis in South Africa.
Methods
We assessed restoration feasibility by establishing seagrass transplant plots based on different transplant source materials (diameter (ø) 10 cm cores and anchored individual shoots), planting patterns (line, dense, bullseye) and planting site (upper, upper-mid and mid-intertidal zones). Monitoring of area cover, shoot length, and macrofaunal diversity was conducted over 18 months.
Results
Mixed model analysis showed distinct effects of transplant material used, planting pattern and site on transplant survival and area cover. Significant declines in seagrass cover across all treatments was recorded post-transplantation (2 months), followed by a period of recovery. Of the transplants that persisted after 18 months of monitoring (~58% plots survived across all treatments), seagrass area cover increased (~112%) and in some cases expanded by over >400% cover, depending on type of transplant material, planting arrangement and site. Higher bioturbator pressure from sandprawns (Kraussillichirus kraussi) significantly reduced transplant survival and area cover. Transplant plots were colonised by invertebrates, including seagrass specialists, such as South Africa’s most endangered marine invertebrate, the false-eelgrass limpet (Siphonaria compressa). For future seagrass restoration projects, transplanting cores was deemed the best method, showing higher long-term persistence and cover, however this approach is also resource intensive with potentially negative impacts on donor meadows at larger scales. There is a clear need for further research to address Z. capensis restoration scalability and improve long-term transplant persistence.
Background
Seagrass meadows provide valuable ecosystem services but are threatened by global change pressures, and there is growing concern that the functions seagrasses perform within an ecosystem will be reduced or lost without intervention. Restoration has become an integral part of coastal management in response to major seagrass declines, but is often context dependent, requiring an assessment of methods to maximise restoration success. Here we investigate the use of different restoration strategies for the endangered Zostera capensis in South Africa.
Methods
We assessed restoration feasibility by establishing seagrass transplant plots based on different transplant source materials (diameter (ø) 10 cm cores and anchored individual shoots), planting patterns (line, dense, bullseye) and planting site (upper, upper-mid and mid-intertidal zones). Monitoring of area cover, shoot length, and macrofaunal diversity was conducted over 18 months.
Results
Mixed model analysis showed distinct effects of transplant material used, planting pattern and site on transplant survival and area cover. Significant declines in seagrass cover across all treatments was recorded post-transplantation (2 months), followed by a period of recovery. Of the transplants that persisted after 18 months of monitoring (~58% plots survived across all treatments), seagrass area cover increased (~112%) and in some cases expanded by over >400% cover, depending on type of transplant material, planting arrangement and site. Higher bioturbator pressure from sandprawns (Kraussillichirus kraussi) significantly reduced transplant survival and area cover. Transplant plots were colonised by invertebrates, including seagrass specialists, such as South Africa’s most endangered marine invertebrate, the false-eelgrass limpet (Siphonaria compressa). For future seagrass restoration projects, transplanting cores was deemed the best method, showing higher long-term persistence and cover, however this approach is also resource intensive with potentially negative impacts on donor meadows at larger scales. There is a clear need for further research to address Z. capensis restoration scalability and improve long-term transplant persistence.