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2025	Deep Learning in Genetics and Genomics Nivedya Kottarath, Megha Hari, K.R. Dasegowda, H. Prabhavathi, Agnik Haldar, Mohammed Abdul Kareem
2025	Communications in Computer and Information Science Khalid Raza
2025	BFMDDT: A Decision-Tree-Based Gene Regulatory Network Inference From Multi-Type Datasets IEEE Transactions on Computational Biology and Bioinformatics Mingcan Wang, Zhiqiong Wang, Luxuan Qu, Kaifu Long, Junchang Xin
2025	A review of methods for gene regulatory networks reconstruction and analysis Artificial Intelligence Review Sura I. Mohammed Ali, Sura Zaki Alrashid
2024	PPRTGI: A Personalized PageRank Graph Neural Network for TF-Target Gene Interaction Detection IEEE/ACM Transactions on Computational Biology and Bioinformatics Ke Ma, Jiawei Li, Mengyuan Zhao, Ibrahim Zamit, Bin Lin, Fei Guo, Jijun Tang
2024	ExGenet, Integrating Design of Experiments and Response Surface Methodology for Cancer Gene Detection in Gene Regulatory Networks Cancer Informatics Mahboube Ayoubi, Babak Teimourpour, Alireza Hassanzadeh
2023	A generic parallel framework for inferring large-scale gene regulatory networks from expression profiles: application to Alzheimer’s disease network Briefings in Bioinformatics Softya Sebastian, Swarup Roy, Jugal Kalita
2023	Artificial Intelligence and Machine Learning in Healthcare Monu Mishra, Vikas Dubey, Timothy A. Hackett, Manish K. Kashyap
2022	Supervised, Unsupervised and Semi-Supervised Word Sense Disambiguation Approaches Advances in Intelligent Systems and Technologies Anandakumar Haldorai
2021	Modular network inference between miRNA–mRNA expression profiles using weighted co-expression network analysis Journal of Integrative Bioinformatics Nisar Wani, Debmalya Barh, Khalid Raza
2021	Translational Bioinformatics in Healthcare and Medicine Sahar Qazi, Khalid Raza