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2025	RCE-IFE: recursive cluster elimination with intra-cluster feature elimination PeerJ Computer Science Cihan Kuzudisli, Burcu Bakir-Gungor, Bahjat Qaqish, Malik Yousef
2025	A Novel Adaptive Sparse Deep Feature Selection Method for Enhanced Gene-based Cancer Classification Engineering, Technology & Applied Science Research Sara Haddou Bouazza
2025	Integrating Biological Domain Knowledge with Machine Learning for Identifying Colorectal-Cancer-Associated Microbial Enzymes in Metagenomic Data Applied Sciences Burcu Bakir-Gungor, Nur Sebnem Ersoz, Malik Yousef
2025	2025 33rd Signal Processing and Communications Applications Conference (SIU) Mustafa Temiz, Nur Sebnem Ersoz, Malik Yousef, Burcu Bakir-Gungor
2025	Lecture Notes in Networks and Systems Emma Qumsiyeh, Burcu Bakir-Gungor, Malik Yousef
2024	Biosynthesis of Natural Products in Plants Amar A. Sakure, Sushil Kumar
2024	CCPred: Global and population-specific colorectal cancer prediction and metagenomic biomarker identification at different molecular levels using machine learning techniques Computers in Biology and Medicine Burcu Bakir-Gungor, Mustafa Temiz, Yasin Inal, Emre Cicekyurt, Malik Yousef
2024	Topic selection for text classification using ensemble topic modeling with grouping, scoring, and modeling approach Scientific Reports Daniel Voskergian, Rashid Jayousi, Malik Yousef
2024	SEDEG: An automatic method for preprocessing and selection of seed genes from gene expression data Informatics in Medicine Unlocked Giuseppe Agapito, Marianna Milano, Pietro Cinaglia, Mario Cannataro
2024	Enhanced TextNetTopics for Text Classification Using the G-S-M Approach with Filtered fastText-Based LDA Topics and RF-Based Topic Scoring: fasTNT Applied Sciences Daniel Voskergian, Rashid Jayousi, Malik Yousef
2024	Systems Biology Approaches for Host-Pathogen Interaction Analysis Shilpa Kumari, Neha Verma, Anil Kumar, Sunita Dalal, Kanu Priya
2024	The Prominence of the Broad-Spectrum Protease inhibitor gene A2ML1 as a potential biomarker in cervical cancer diagnostics using Immunotherapeutic and Multi-Omics approaches International Immunopharmacology Muhammad Naveed, Muhammad Saad Mughal, Tariq Aziz, Khizra Jabeen, Ayaz Ali Khan, Majid Alhomrani, Walaa F. Alsanie, Abdulhakeem S. Alamri
2024	2024 32nd Signal Processing and Communications Applications Conference (SIU) Emma Qumsiyeh, Burcu Bakir-Gungor, Malik Yousef
2023	TextNetTopics Pro, a topic model-based text classification for short text by integration of semantic and document-topic distribution information Frontiers in Genetics Daniel Voskergian, Burcu Bakir-Gungor, Malik Yousef
2023	PriPath: identifying dysregulated pathways from differential gene expression via grouping, scoring, and modeling with an embedded feature selection approach BMC Bioinformatics Malik Yousef, Fatma Ozdemir, Amhar Jaber, Jens Allmer, Burcu Bakir-Gungor
2023	Molecular bioprospection of Helianthus annuus L. (sunflower) cypselae for antidiabetic therapeutics through network pharmacology, density functional theory and molecular dynamics simulation South African Journal of Botany Athika Rampadarath, Jamiu Olaseni Aribisala, Nokwanda Pearl Makunga, Sithandiwe Mazibuko-Mbeje, Saheed Sabiu
2023	Invention of 3Mint for feature grouping and scoring in multi-omics Frontiers in Genetics Miray Unlu Yazici, J. S. Marron, Burcu Bakir-Gungor, Fei Zou, Malik Yousef
2023	miRdisNET: Discovering microRNA biomarkers that are associated with diseases utilizing biological knowledge-based machine learning Frontiers in Genetics Amhar Jabeer, Mustafa Temiz, Burcu Bakir-Gungor, Malik Yousef
2023	miRGediNET: A comprehensive examination of common genes in miRNA-Target interactions and disease associations: Insights from a grouping-scoring-modeling approach Heliyon Emma Qumsiyeh, Zaidoun Salah, Malik Yousef
2023	GeNetOntology: identifying affected gene ontology terms via grouping, scoring, and modeling of gene expression data utilizing biological knowledge-based machine learning Frontiers in Genetics Nur Sebnem Ersoz, Burcu Bakir-Gungor, Malik Yousef
2023	AMP-GSM: Prediction of Antimicrobial Peptides via a Grouping–Scoring–Modeling Approach Applied Sciences Ümmü Gülsüm Söylemez, Malik Yousef, Burcu Bakir-Gungor
2023	microBiomeGSM: the identification of taxonomic biomarkers from metagenomic data using grouping, scoring and modeling (G-S-M) approach Frontiers in Microbiology Burcu Bakir-Gungor, Mustafa Temiz, Amhar Jabeer, Di Wu, Malik Yousef
2023	2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Miray Unlu Yazici, J. S. Marron, Burcu Bakir-Gungor, Malik Yousef
2023	Review of feature selection approaches based on grouping of features PeerJ Cihan Kuzudisli, Burcu Bakir-Gungor, Nurten Bulut, Bahjat Qaqish, Malik Yousef
2022	TextNetTopics: Text Classification Based Word Grouping as Topics and Topics’ Scoring Frontiers in Genetics Malik Yousef, Daniel Voskergian
2022	Prediction of Linear Cationic Antimicrobial Peptides Active against Gram-Negative and Gram-Positive Bacteria Based on Machine Learning Models Applied Sciences Ümmü Gülsüm Söylemez, Malik Yousef, Zülal Kesmen, Mine Erdem Büyükkiraz, Burcu Bakir-Gungor
2022	GediNET for discovering gene associations across diseases using knowledge based machine learning approach Scientific Reports Emma Qumsiyeh, Louise Showe, Malik Yousef
2022	Differentially Expressed Genes Reveal the Biomarkers and Molecular Mechanism of Osteonecrosis Journal of Healthcare Engineering Huanzhi Ma, Wei Zhang, Jun Shi
2022	miRModuleNet: Detecting miRNA-mRNA Regulatory Modules Frontiers in Genetics Malik Yousef, Gokhan Goy, Burcu Bakir-Gungor
2022	Upcoming progress of transcriptomics studies on plants: An overview Frontiers in Plant Science Parul Tyagi, Deeksha Singh, Shivangi Mathur, Ayushi Singh, Rajiv Ranjan
2022	Studies in Computational Intelligence Fatima Nazish Khan, Malik Yousef, Khalid Raza
2021	miRcorrNet: machine learning-based integration of miRNA and mRNA expression profiles, combined with feature grouping and ranking PeerJ Malik Yousef, Gokhan Goy, Ramkrishna Mitra, Christine M. Eischen, Amhar Jabeer, Burcu Bakir-Gungor
2021	Support vector machine-based prediction of pore-forming toxins (PFT) using distributed representation of reduced alphabets Journal of Bioinformatics and Computational Biology Hrushikesh Bhosale, Vigneshwar Ramakrishnan, Valadi K. Jayaraman
2021	Communications in Computer and Information Science Malik Yousef, Ahmet Sayıcı, Burcu Bakir-Gungor
2020	Application of Biological Domain Knowledge Based Feature Selection on Gene Expression Data Entropy Malik Yousef, Abhishek Kumar, Burcu Bakir-Gungor
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