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2025
Sex-Biased Admixture Followed by Isolation and Adaptive Evolution Shaped the Genomic and Blood Pressure Diversity of the LopNur People
Molecular Biology and Evolution
2025
An evolutionarily conserved constellation of functional cis-elements programs the virus-responsive fate of the human (epi)genome
Nucleic Acids Research
2025
Initial Screening of Extrachromosomal Circular DNA Candidates for Pork Meat Quality Traits Using Circle-Seq and RNA-Seq Analysis
Animals
2025
Unequally Abundant Chromosomes and Unusual Collections of Transferred Sequences Characterize Mitochondrial Genomes of Gastrodia (Orchidaceae), One of the Largest Mycoheterotrophic Plant Genera
Molecular Biology and Evolution
2025
Comprehensive genome annotation of Trilocha varians, a new model species of Lepidopteran insects
Scientific Data
2025
Comparative analysis of the organelle genomes of seven Rosa species (Rosaceae): insights into structural variation and phylogenetic position
Frontiers in Plant Science
2025
Chromosome-level genome assembly of the doctor fish (Garra rufa)
Scientific Data
2025
Chromosome painting reveals conserved centromere oligonucleotide sequences and comparable karyotypes across diverse Citrus species
Horticulture Advances
2025
Genome-wide copy number variation drives adaptive evolution in Macaca mulatta populations
Current Zoology
2025
Complete stranded RNA profiling during early mouse gonad development
NAR Molecular Medicine
2025
Single-cell transcriptomics of ventral forebrain progenitors identifies Evf2 enhancer lncRNA-enhancer gene guidance through direct RNA binding and RNP recruitment domains
Nature Communications
2025
Genome-wide identification of protein kinase family in Populus tomentosa: Functional evidence for causative protein kinase in secondary cell wall biosynthesis
International Journal of Biological Macromolecules
2025
H4K20me3 erasure facilitates reprogramming to totipotent-like state by promoting DUX4 mediated transcription
Fundamental Research
2025
Unraveling the mitochondrial genome of the medicinal Chinese motherwort (Leonurus japonicus, Lamiaceae): structural dynamics, organelle-to-nuclear gene transfer, and evolutionary implications
Frontiers in Plant Science
2025
Continuous infiltration and evolutionary trajectory of nuclear organelle DNA inOryza
Genome Research
2025
Decoding the mitogenome of rosemary (Salvia rosmarinus): insights into genome evolution, structural dynamics and prospects for mitochondrial engineering
BMC Plant Biology
2025
A draft UAE-based Arab pangenome reference
Nature Communications
2025
Assembly and Annotation of the Tetraploid Salsola tragus (Russian Thistle) Genome
Genome Biology and Evolution
2025
An Inversion Polymorphism Under Balancing Selection, Involving Giant Mobile Elements, in an Invasive Fungal Pathogen
Molecular Biology and Evolution
2025
Genomics-Assisted Improvement in Blast Resistance and Low Cadmium Accumulation in an Elite Rice Variety
Agronomy
2025
Small non-coding RNA profiling in patients with non-muscle invasive bladder cancer
BMC Cancer
2025
Centromeric transposable elements and epigenetic status drive karyotypic variation in the eastern hoolock gibbon
Cell Genomics
2025
Transcriptome analysis revealed alternative splicing landscape in response to gray-blight disease in tea plant
Industrial Crops and Products
2025
Chromosome-level genome assembly of the clam, Xishi tongue Coelomactra antiquata
Scientific Data
2025
Comprehensive genome annotation of Bombyx mori p50ma strain, a newly developed standard strain
Scientific Data
2025
Optical genome and epigenome mapping of clear cell renal cell carcinoma
NAR Cancer
2025
Systematic Identification of Phosphate Transporter Family 1 (PHT1) Genes and Their Expression Profiling in Response to Low Phosphorus and Related Hormones in Fagopyrum tataricum (L.) Gaertn.
Agronomy
2025
Genome-wide analysis of phasiRNAs in tea plant reveals a miR482k-PHAS regulatory pathway in response to gray blight
Plant Physiology and Biochemistry
2025
Haplotype Analysis of the GL7/GW7/SLG7 Gene and Its Application in Improving the Grain Quality of Three-Line Hybrid Rice
Rice
2025
Meiotic cohesin RAD21L shapes 3D genome structure and transcription in the male germline
Science Advances
2025
EASYstrata: an all-in-one workflow for genome annotation and genomic divergence analysis
NAR Genomics and Bioinformatics
2025
A chromosome-level genome assembly of the European green toad (Bufotes viridis)
G3: Genes, Genomes, Genetics
2025
A Pedigree-Based Map of Crossovers and Noncrossovers in Aye-Ayes (Daubentonia madagascariensis)
Genome Biology and Evolution
2025
Transcriptome reveals Gafmt-1 and Gadlc-1–5 play positive roles in cotton resistance to Verticillium wilt
Plant Cell Reports
2025
Mitochondrial gene editing and allotopic expression unveil the role of orf125 in the induction of male fertility in some Solanum spp. hybrids and in the evolution of the common potato
Plant Biotechnology Journal
2025
Most human DNA replication initiation is dispersed throughout the genome with only a minority within previously identified initiation zones
Genome Biology
2025
Characterization of novel human endogenous retrovirus structures on chromosomes 6 and 7
Frontiers in Genetics
2025
Genome-Wide In Silico Analysis of Leucine-Rich Repeat R-Genes in Perilla citriodora: Classification and Expression Insights
Genes
2025
A haplotype‐resolved reference genome of Quercus alba sheds light on the evolutionary history of oaks
New Phytologist
2025
Repeated loss of function at HD mating-type genes and of recombination in anther-smut fungi
Nature Communications
2025
Assembly and comparative analysis of the complete mitochondrial genome of <i>Yulania liliiflora</i>: an ornamental plant with high medicinal value
Ornamental Plant Research
2025
Comparative genomics reveals putative copper tolerance genes in a Fusarium oxysporum strain
G3: Genes, Genomes, Genetics
2025
A telomere-to-telomere genome assembly of cotton provides insights into centromere evolution and short-season adaptation
Nature Genetics
2025
Heterozygote advantage of hybrid varieties from red crucian carp and white crucian carp revealed by genome wide association analysis
Aquaculture
2025
Multi-omics analysis elucidates phased defense and resource allocation trade-offs in fusarium resistance of maize
Plant Stress
2025
Pan-Genome-Based Characterization of the SRS Transcription Factor Family in Foxtail Millet
Plants
2025
A rearranged Amaranthus palmeri extrachromosomal circular DNA confers resistance to glyphosate and glufosinate
The Plant Cell
2025
Fusion, fission, and scrambling of the bilaterian genome in Bryozoa
Genome Research
2025
Multi-tool copy number detection highlights common body size-associated variants in miniature pig breeds from different geographical regions
BMC Genomics
2025
A Chromosome‐Level Genome Sequence Reveals Regulation of Salt Stress Response in Mesembryanthemum crystallinum
Physiologia Plantarum
2025
Comprehensive human proteome profiles across a 50-year lifespan reveal aging trajectories and signatures
Cell
2025
RNA m5C Modifications in the Development and Prognosis of Muscle‐Invasive Bladder Cancer
Molecular Carcinogenesis
2025
Uncovering the architecture of production-driven introgression in Cinisara cattle breed
BMC Genomic Data
2025
Tracing the path from conservation to expansion evolutionary insights into NLR genes in oleaceae
BMC Plant Biology
2025
Single-molecule toxicogenomics: Optical genome mapping of DNA-damage in nanochannel arrays
DNA Repair
2025
A well‐annotated genome of Apium graveolens var. dulce cv. Challenger, a celery with resistance to Fusarium oxysporum f. sp. apii race 2
The Plant Journal
2025
Where Did the Y Chromosome in the Spiny Rat Go, and How Did It Get There?
Molecular Biology and Evolution
2025
Parasitic plasmids are anchored to inactive regions of eukaryotic chromosomes through a nucleosome signal
The EMBO Journal
2025
Gene novelty and gene family expansion in the early evolution of Lepidoptera
BMC Genomics
2025
The reference genome of the human diploid cell line RPE-1
Nature Communications
2025
Genome-wide meta-QTL approach identifies consensus loci associated with agriculturally important tomato fruit traits
Theoretical and Applied Genetics
2025
A chromosome-level genome assembly of wild silkmoth, Bombyx mandarina
Scientific Data
2025
Sex-biased transcriptome in in vitro produced bovine early embryos
Cell & Bioscience
2025
Chromosome-level genome assembly for clubrush (Scirpus × mariqueter) endemic to China
Scientific Data
2025
Telomere‐to‐telomere genome assembly of linseed (Linum usitatissimum L.) for functional genomics and accelerated genetic improvement
Plant Biotechnology Journal
2025
Evaluation of resistance to Verticillium wilt in Gossypium hirsutum-Gossypium arboreum introgression lines and identification of putative resistance genes using RNA-seq
Plant Science
2025
Genomic Diversity and Selection Signatures for Zaosheng Cattle
Biology
2025
Characterizing the regulatory effects of H2A.Z and SWR1-C on gene expression during hydroxyurea exposure in Saccharomyces cerevisiae
PLOS Genetics
2025
Identifying candidate genetic variants for egg number by analyzing over 1,000 fully sequenced layers
GigaScience
2025
Genomic scan of selective sweeps in an alpaca population subjected to directional selection for fiber quality traits
animal
2025
Adaptive radiation and social evolution of the ants
Cell
2025
Genome-Wide Analysis of Copy Number Variations in Three Populations of Nanyang Cattle Using Whole-Genome Resequencing
Genes
2025
Unveiling the mitochondrial genome of Salvia splendens insights into the evolutionary traits within the genus Salvia
Scientific Reports
2025
Identification of novel QTLs for resistance to late leaf spot in peanut by SNP array and QTL-seq analyses
Journal of Integrative Agriculture
2025
Conservation of bilaterian genome structure is the exception, not the rule
Genome Biology
2025
Glutathiones’ life in multi-cancers: especially their potential micropetides in liver hepatocellular carcinoma
Discover Oncology
2025
Cytogenomic and phylogenomic evidence for new infrageneric relationships in Macroptilium (Benth.) beans
Annals of Botany
2025
Characterization of microRNAs, phasiRNAs and hc-siRNAs in Citrus sinensis during Candidatus Liberibacter asiaticus infection
Horticulture, Environment, and Biotechnology
2025
Genome-wide identification and characterization of alfalfa-specific genes in drought stress tolerance
Plant Physiology and Biochemistry
2025
Harnessing Nanopore Sequencing to Investigate the Epigenomic Landscape in Molar Incisor Hypomineralization—A Pilot Study
International Journal of Molecular Sciences
2024
Population comparative genomics discovers gene gain and loss during grapevine domestication
Plant Physiology
2024
Comparative restriction enzyme analysis of methylation (CREAM) reveals methylome variability within a clonal in vitro cannabis population
Frontiers in Plant Science
2024
Pig pangenome graph reveals functional features of non-reference sequences
Journal of Animal Science and Biotechnology
2024
Haplotype-resolved chromosome-level genome of hexaploid Jerusalem artichoke provides insights into its origin, evolution, and inulin metabolism
Plant Communications
2024
Assessing the necessity of screening ≤5 Mb segmental aneuploidy in routine PGT for aneuploidies
Reproductive BioMedicine Online
2024
A Chromosome-Level Genome Assembly and Annotation for the Clouded Apollo Butterfly (Parnassius mnemosyne): A Species of Global Conservation Concern
Genome Biology and Evolution
2024
TriticeaeSSRdb: a comprehensive database of simple sequence repeats in Triticeae
Frontiers in Plant Science
2024
Haplotype-resolved genome of Mimosa bimucronata revealed insights into leaf movement and nitrogen fixation
BMC Genomics
2024
Genome comparisons reveal accessory genes crucial for the evolution of apple Glomerella leaf spot pathogenicity in Colletotrichum fungi
Molecular Plant Pathology
2024
Genome-wide characterization and evolution analysis of miniature inverted-repeat transposable elements in Barley (Hordeum vulgare)
Frontiers in Plant Science
2024
Are there hybrid zones in Fagus sylvatica L. sensu lato?
European Journal of Forest Research
2024
Higher Expression of Human Endogenous Retrovirus-K was Observed in Peripheral B Lymphocytes of Leukemia and Lymphoma Patients
AIDS Research and Human Retroviruses
2024
Genome-Wide Characterization of Class III Peroxidases and Their Expression Profile During Mycorrhizal Symbiosis and Phosphorus Deprivation in Lettuce (Lactuca sativa L.)
Horticulturae
2024
Whole-genome sequencing of tetraploid potato varieties reveals different strategies for drought tolerance
Scientific Reports
2024
Identifying the sex chromosome and sex determination genes in the cattle tick, Rhipicephalus (Boophilus) microplus
G3: Genes, Genomes, Genetics
2024
Human pangenome analysis of sequences missing from the reference genome reveals their widespread evolutionary, phenotypic, and functional roles
Nucleic Acids Research
2024
Chromosome-Scale Genome Assembly for Soft-Stem Bulrush (Schoenoplectus tabernaemontani) Confirms a Clade-Specific Whole-Genome Duplication in Cyperaceae
Genome Biology and Evolution
2024
Genome of the endangered eastern quoll (Dasyurus viverrinus) reveals signatures of historical decline and pelage color evolution
Communications Biology
2024
Genetic Analysis and Fine Mapping of QTLs for Stigma Exsertion Rate in Rice
Rice
2024
Unraveling the genetic basis of quantitative resistance to diseases in tomato: a meta-QTL analysis and mining of transcript profiles
Plant Cell Reports
2024
Understanding genetic variability: exploring large-scale copy number variants through non-invasive prenatal testing in European populations
BMC Genomics
2024
TULIPs decorate the three-dimensional genome of PFA ependymoma
Cell
2024
Integrative genomics reveals the polygenic basis of seedlessness in grapevine
Current Biology
2024
A concise guide to essential R packages for analyses of DNA, RNA, and proteins
Molecules and Cells
2024
Extensive Loss and Gain of Conserved Noncoding Elements During Early Teleost Evolution
Genome Biology and Evolution
2024
TCOD: an integrated resource for tropical crops
Nucleic Acids Research
2024
Genome‐wide identification of sweet potato U‐Box E3 ubiquitin ligases and roles of IbPUB52 in negative regulation of drought stress
Physiologia Plantarum
2024
Comprehensive analysis of m6A methylome and transcriptome by Nanopore sequencing in clear cell renal carcinoma
Molecular Carcinogenesis
2024
Telomere-to-telomere genome assembly of the aflatoxin biocontrol agent Aspergillus flavus isolate La3279 isolated from maize in Nigeria
Microbiology Resource Announcements
2024
Risk factor prediction and immune correlation analysis of cuproptosis‐related gene in osteoarthritis
Journal of Cellular and Molecular Medicine
2024
Repeat-based holocentromeres of the woodrush Luzula sylvatica reveal insights into the evolutionary transition to holocentricity
Nature Communications
2024
Genomic insights into the evolution of secondary metabolism of Escovopsis and its allies, specialized fungal symbionts of fungus-farming ants
mSystems
2024
Comparative genomics points to tandem duplications of SAD gene clusters as drivers of increased α‐linolenic (ω‐3) content in S. hispanica seeds
The Plant Genome
2024
Genome-Wide Profiling of the ACTIN Gene Family and Its Implications for Agronomic Traits in Brassica napus: A Bioinformatics Study
International Journal of Molecular Sciences
2024
A chromosome-level genome of Chenghua pig provides new insights into the domestication and local adaptation of pigs
International Journal of Biological Macromolecules
2024
Genomic signatures of exceptional longevity and negligible aging in the long-lived red sea urchin
Cell Reports
2024
Unveiling the Genomic Symphony: Identification Cultivar-Specific Genes and Enhanced Insights on Sweet Sorghum Genomes Through Comprehensive superTranscriptomic Analysis
Journal of Molecular Evolution
2024
Analysis of genomic copy number variations through whole-genome scan in Yunling cattle
Frontiers in Veterinary Science
2024
Comprehensive Transcriptomic Analysis of Spodoptera frugiperda Reveals Stage-Specific Gene Expression and P450-Mediated Adaptation Mechanisms
Agronomy
2024
Phased telomere-to-telomere reference genome and pangenome reveal an expansion of resistance genes during apple domestication
Plant Physiology
2024
Single-stranded pre-methylated 5mC adapters uncover the methylation profile of plasma ultrashort Single-stranded cell-free DNA
Nucleic Acids Research
2024
The pineapple reference genome: Telomere‐to‐telomere assembly, manually curated annotation, and comparative analysis
Journal of Integrative Plant Biology
2024
Comprehensive mapping of molecular cytogenetic markers in pitaya (Hylocereus undatus) and related species
Frontiers in Plant Science
2024
The evolutionary origin of naturally occurring intermolecular Diels-Alderases from Morus alba
Nature Communications
2024
Annelid Comparative Genomics and the Evolution of Massive Lineage-Specific Genome Rearrangement in Bilaterians
Molecular Biology and Evolution
2024
Genome-Wide Association Analysis Identifies Candidate Loci for Callus Induction in Rice (Oryza sativa L.)
Plants
2024
An in vitro approach reveals molecular mechanisms underlying endocrine disruptor-induced epimutagenesis
eLife
2024
Identification and expression analyses of B3 genes reveal lineage-specific evolution and potential roles of REM genes in pepper
BMC Plant Biology
2024
Identification of transcriptionally‐active human papillomavirus integrants through nanopore sequencing reveals viable targets for gene therapy against cervical cancer
Journal of Medical Virology
2024
Genome report: chromosome-scale genome assembly of the West Indian fruit fly Anastrepha obliqua (Diptera: Tephritidae)
G3: Genes, Genomes, Genetics
2024
Highly active repeat-mediated recombination in the mitogenome of the aquatic grass Hygroryza aristata
BMC Plant Biology
2024
Dynamic landscape of m6A modifications and related post-transcriptional events in muscle-invasive bladder cancer
Journal of Translational Medicine
2024
Genome biology and evolution of mating-type loci in four cereal rust fungi
PLOS Genetics
2024
Divergent evolution of NLR genes in the genus Glycine: impacts of annuals and perennials’ life history strategies
Frontiers in Plant Science
2024
Genetic determinants of plasma protein levels in the Estonian population
Scientific Reports
2024
An Extensive Performance Comparison between Feature Reduction and Feature Selection Preprocessing Algorithms on Imbalanced Wide Data
Information
2024
Genomic selection on ear height, plant height and grain yield in the primary testing stage of maize hybrids
Euphytica
2024
Chromosome-Scale Genome Assembly for Clubrush (Bolboschoenus planiculmis) Indicates a Karyotype with High Chromosome Number and Heterogeneous Centromere Distribution
Genome Biology and Evolution
2024
Comparative analysis of the organelle genomes of Aconitum carmichaelii revealed structural and sequence differences and phylogenetic relationships
BMC Genomics
2024
Chromosome Structural Rearrangements in Invasive Haplodiploid Ambrosia Beetles Revealed by the Genomes of Euwallacea fornicatus (Eichhoff) and Euwallacea similis (Ferrari) (Coleoptera, Curculionidae, Scolytinae)
Genome Biology and Evolution
2024
De Novo Genome Assembly and Annotation for the Synanthropic Webbing Clothes Moth (Tineola bisselliella): A Globally Distributed, Economically Important Pest
Genome Biology and Evolution
2024
Sex and neo-sex chromosome evolution in beetles
PLOS Genetics
2024
Comprehensive deciphering the alternative splicing patterns involved in leaf morphogenesis of Liriodendron chinense
BMC Plant Biology
2024
Genomic analyses reveal the stepwise domestication and genetic mechanism of curd biogenesis in cauliflower
Nature Genetics
2024
Chromosome-level genome assembly and annotation of a potential model organism Gossypium arboreum ZB-1
Scientific Data
2024
An in vitro approach reveals molecular mechanisms underlying endocrine disruptor-induced epimutagenesis
eLife
2024
Divergence of 10 satellite repeats in Artemisia (Asteraceae: Anthemideae) based on sequential fluorescence in situ hybridization analysis: evidence for species identification and evolution
Chromosome Research
2024
Complete Annotated Genome Assembly of Flax Pathogen Colletotrichum lini
Journal of Fungi
2024
Genome-wide association study of drought tolerance in wheat (Triticum aestivum L.) identifies SNP markers and candidate genes
Molecular Genetics and Genomics
2024
Genotyping-by-sequencing-based high-resolution mapping reveals a single candidate gene for the grapevine veraison locus Ver1
Plant Physiology
2024
Chromosome-scale genome assembly of the tropical abalone (Haliotis asinina)
Scientific Data
2024
Genome assembly of the southern pine beetle ( Dendroctonus frontalis Zimmerman) reveals the origins of gene content reduction in Dendroctonus
Royal Society Open Science
2024
Genetic Diversity and Genome-Wide Association in Cowpeas (Vigna unguiculata L. Walp)
Agronomy
2024
The loach haplotype-resolved genome and the identification of Mex3a involved in fish air breathing
Cell Genomics
2024
Genome-Wide Analysis Reveals Copy Number Variant Gene TGFBR3 Regulates Pig Back Fat Deposition
Animals
2024
West African cattle share non-random heterozygosity-rich region islands enriched on adaptation-related genes despite their different origins
Frontiers in Animal Science
2024
Divergent evolution of male-determining loci on proto-Y chromosomes of the housefly
Nature Communications
2023
Methods in Molecular Biology
2023
Genome structures resolve the early diversification of teleost fishes
Science
2023
Comprehensive Genome and Transcriptome Analysis Identifies SLCO3A1 Associated with Aggressive Behavior in Pigs
Biomolecules
2023
The Genomic Variation and Differentially Expressed Genes on the 6P Chromosomes in Wheat–Agropyron cristatum Addition Lines 5113 and II-30-5 Confer Different Desirable Traits
International Journal of Molecular Sciences
2023
Chromosomal-level Genome Assembly of the Coffee Bee Hawk Moth Reveals the Evolution of Chromosomes and the Molecular Basis of Distinct Phenotypes
Genome Biology and Evolution
2023
Long-read, chromosome-scale assembly of Vitis rotundifolia cv. Carlos and its unique resistance to Xylella fastidiosa subsp. fastidiosa
BMC Genomics
2023
Telomere-to-Telomere Genome Assembly of Tibetan Medicinal Mushroom Ganoderma leucocontextum and the First Copia Centromeric Retrotransposon in Macro-Fungi Genome
Journal of Fungi
2023
Identifying RNA Modifications by Direct RNA Sequencing Reveals Complexity of Epitranscriptomic Dynamics in Rice
Genomics, Proteomics & Bioinformatics
2023
Investigation of NLR Genes Reveals Divergent Evolution on NLRome in Diploid and Polyploid Species in Genus Trifolium
Genes
2023
Genome-Wide Expression Analysis of Long Noncoding RNAs and Their Target Genes in Metafemale Drosophila
International Journal of Molecular Sciences
2023
Spiralian genomics and the evolution of animal genome architecture
Briefings in Functional Genomics
2023
Systematic dissection of genomic features determining the vast diversity of conotoxins
BMC Genomics
2023
The Populus koreana genome provides insights into the biosynthesis of plant aroma
Industrial Crops and Products
2023
Parent-of-origin detection and chromosome-scale haplotyping using long-read DNA methylation sequencing and Strand-seq
Cell Genomics
2023
Integrative profiling of extrachromosomal circular DNA in placenta and maternal plasma provides insights into the biology of fetal growth restriction and reveals potential biomarkers
Frontiers in Genetics
2023
CoreSNP: an efficient pipeline for core marker profile selection from genome-wide SNP datasets in crops
BMC Plant Biology
2023
Chromosome-level genome assembly and population genomic resource to accelerate orphan crop lablab breeding
Nature Communications
2023
Structural evidence for MADS‐box type I family expansion seen in new assemblies of Arabidopsis arenosa and A. lyrata
The Plant Journal
2023
The common origin and degenerative evolution of flagella in Actinobacteria
mBio
2023
Complete genome of the toxic mold Aspergillus pseudotamarii isolate NRRL 25517 reveals genomic instability of the aflatoxin biosynthesis cluster
G3: Genes, Genomes, Genetics
2023
AMBAR - Interactive Alteration annotations for molecular tumor boards
Computer Methods and Programs in Biomedicine
2023
Whole-Genome Analysis Reveals the Dynamic Evolution of Holocentric Chromosomes in Satyrine Butterflies
Genes
2023
Vitis labrusca genome assembly reveals diversification between wild and cultivated grapevine genomes
Frontiers in Plant Science
2023
Methylome, transcriptome, and phenotype changes induced by temperature conditions experienced during sexual reproduction in Fragaria vesca
Physiologia Plantarum
2023
Chromosomal conservatism vs chromosomal megaevolution: enigma of karyotypic evolution in Lepidoptera
Chromosome Research
2023
Genome-wide association study to identify genomic loci associated with early vigor in bread wheat under simulated water deficit complemented with quantitative trait loci meta-analysis
G3: Genes, Genomes, Genetics
2023
syntenyPlotteR: a user-friendly R package to visualize genome synteny, ideal for both experienced and novice bioinformaticians
Bioinformatics Advances
2023
The haplotype-resolved T2T reference genome highlights structural variation underlying agronomic traits of melon
Horticulture Research
2023
Chromosome-scale genome assembly of the rusty patched bumble bee, Bombus affinis (Cresson) (Hymenoptera: Apidae), an endangered North American pollinator
G3: Genes, Genomes, Genetics
2023
Down Syndrome detection with Swin Transformer architecture
Biomedical Signal Processing and Control
2023
The complete sequence of a human Y chromosome
Nature
2023
Splashed E-box and AP-1 motifs cooperatively drive regeneration response and shape regeneration abilities
Biology Open
2023
Actin cytoskeleton and complex cell architecture in an Asgard archaeon
Nature
2023
Marine Bacteroidetes enzymatically digest xylans from terrestrial plants
Environmental Microbiology
2023
quarTeT: a telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification
Horticulture Research
2023
Comparative genomics of Mollicutes-related endobacteria supports a late invasion into Mucoromycota fungi
Communications Biology
2023
Genome-wide characterization of ubiquitin-conjugating enzyme gene family explores its genetic effects on the oil content and yield of Brassica napus
Frontiers in Plant Science
2023
Comparative genomics of symbiotic Photobacterium using highly contiguous genome assemblies from long read sequences
Microbial Genomics
2023
First Vanilla planifolia High-Density Genetic Linkage Map Provides Quantitative Trait Loci for Resistance to Fusarium oxysporum
Plant Disease
2023
Chromatic Differentiation of Functional Mappings of the Composition of Nucleic Acids
Symmetry
2023
Dynamic Evolution of NLR Genes in Dalbergioids
Genes
2023
Centromeric repeats in Citrus sinensis provide new insights into centromeric evolution and the distribution of G-quadruplex structures
Horticulture Advances
2023
Mitochondrial Genome Sequence of Salvia officinalis (Lamiales: Lamiaceae) Suggests Diverse Genome Structures in Cogeneric Species and Finds the Stop Gain of Genes through RNA Editing Events
International Journal of Molecular Sciences
2023
Characterization of histone acetyltransferases and deacetylases and their roles in response to dehydration stress in Pyropia yezoensis (Rhodophyta)
Frontiers in Plant Science
2023
Genome-wide identification and transcriptome-based expression pattern of chemosensory genes in two wild silkmoths,Antheraea pernyi andAntheraea yamamai
Journal of Insects as Food and Feed
2023
Epigenome-wide association studies of meat traits in Chinese Yorkshire pigs highlights several DNA methylation loci and genes
Frontiers in Genetics
2023
Transcriptome Analysis Revealed thatGhPP2C43-ANegatively Regulates Salinity Tolerance in an Introgression Line from a Semi-Wild Upland Cotton
Plant And Cell Physiology
2023
Transposable Element Interactions Shape the Ecology of the Deer Mouse Genome
Molecular Biology and Evolution
2023
Subtelomeric 5-enolpyruvylshikimate-3-phosphate synthase copy number variation confers glyphosate resistance in Eleusine indica
Nature Communications
2023
Identifying key DNA methylation sites and their cis-methylation quantitative loci for intramuscular fatty acid traits using genome and methylome data in Yorkshire pigs
Italian Journal of Animal Science
2023
Dynamics of Amino Acid Metabolism, Gene Expression, and Circulomics in a Recombinant Chinese Hamster Ovary Cell Line Adapted to Moderate and High Levels of Extracellular Lactate
Genes
2023
Methods in Molecular Biology
2023
Evolution of NLR genes in genus Arachis reveals asymmetric expansion of NLRome in wild and domesticated tetraploid species
Scientific Reports
2023
The super-enhancer repertoire in porcine liver
Journal of Animal Science
2023
Genome-wide identification and characterization of SRLK gene family reveal their roles in self-incompatibility of Erigeron breviscapus
BMC Genomics
2023
A chromosome-level reference genome assembly of the Reeve’s moray eel (Gymnothorax reevesii)
Scientific Data
2023
Promoter insertion leads to polyembryony in mango — a case of convergent evolution with citrus
Horticulture Research
2023
Arbuscular mycorrhizal fungi heterokaryons have two nuclear populations with distinct roles in host–plant interactions
Nature Microbiology
2023
Multi-Environment Genome-Wide Association Studies of Yield Traits in Common Bean (Phaseolus vulgaris L.) × Tepary Bean (P. acutifolius A. Gray) Interspecific Advanced Lines in Humid and Dry Colombian Caribbean Subregions
Agronomy
2023
Comparative analysis of the organelle genomes of three Rhodiola species provide insights into their structural dynamics and sequence divergences
BMC Plant Biology
2023
The genomics and evolution of inter-sexual mimicry and female-limited polymorphisms in damselflies
Nature Ecology & Evolution
2023
A multi-omics integrative analysis based on CRISPR screens re-defines the pluripotency regulatory network in ESCs
Communications Biology
2023
Segregation patterns and inheritance rate of copy number variations regions assessed in a Gochu Asturcelta pig pedigree
Gene
2023
Comparative Analysis of Tylosema esculentum Mitochondrial DNA Revealed Two Distinct Genome Structures
Biology
2023
Unzipped chromosome-level genomes reveal allopolyploid nematode origin pattern as unreduced gamete hybridization
Nature Communications
2023
Elasmobranch genome sequencing reveals evolutionary trends of vertebrate karyotype organization
Genome Research
2023
MegaLTR: a web server and standalone pipeline for detecting and annotating LTR-retrotransposons in plant genomes
Frontiers in Plant Science
2023
The Genome of the Yellow Mealworm, Tenebrio molitor: It’s Bigger Than You Think
Genes
2023
Genome-Wide Analysis of bHLH Family Genes and Identification of Members Associated with Cold/Drought-Induced Photoinhibition in Kandelia obovata
International Journal of Molecular Sciences
2023
Molecular cytogenetic map visualizes the heterozygotic genome and identifies translocation chromosomes in Citrus sinensis
Journal of Genetics and Genomics
2023
A pangenome reference of 36 Chinese populations
Nature
2023
The impact of local genomic properties on the evolutionary fate of genes
eLife
2023
Macroevolution of NLR genes in family Fabaceae provides evidence of clade specific expansion and contraction of NLRome in Vicioid clade
Plant Stress
2023
Expression and high levels of insertional polymorphism of an endogenous gammaretrovirus lineage in dogs
PLOS Genetics
2023
Comparative and expression analyses of AP2/ERF genes reveal copy number expansion and potential functions of ERF genes in Solanaceae
BMC Plant Biology
2023
Genome-wide analysis of the GRAS gene family in Liriodendron chinense reveals the putative function in abiotic stress and plant development
Frontiers in Plant Science
2023
Distinct Features of Plasma Ultrashort Single-Stranded Cell-Free DNA as Biomarkers for Lung Cancer Detection
Clinical Chemistry
2023
Warmer temperature during asexual reproduction induce methylome, transcriptomic, and lasting phenotypic changes in Fragaria vesca ecotypes
Horticulture Research
2023
Investigation of Resistance Genes in Genus Vigna Reveals Highly Variable NLRome in Parallel Domesticated Member Species
Genes
2023
Genome-wide sequencing identifies a thermal-tolerance related synonymous mutation in the mussel, Mytilisepta virgata
Communications Biology
2023
Local ancestry and selection in admixed Sanjiang cattle
Stress Biology
2023
Read-depth based approach on whole genome resequencing data reveals important insights into the copy number variation (CNV) map of major global buffalo breeds
BMC Genomics
2023
Genome-Wide Analysis of WOX Multigene Family in Sunflower (Helianthus annuus L.)
International Journal of Molecular Sciences
2023
Comparison of the combined use of CNV-seq and karyotyping or QF-PCR in prenatal diagnosis: a retrospective study
Scientific Reports
2022
Highly active repeat-mediated recombination in the mitogenome of the holoparasitic plant Aeginetia indica
Frontiers in Plant Science
2022
Chromosome-level genome assembly of grass carp (Ctenopharyngodon idella) provides insights into its genome evolution
BMC Genomics
2022
GeMo: a web-based platform for the visualization and curation of genome ancestry mosaics
Database
2022
A new haplotype-resolved turkey genome to enable turkey genetics and genomics research
GigaScience
2022
A Survey of Visualization Approaches for Comparative Genomics
Journal of Computer-Aided Design & Computer Graphics
2022
Genome-wide analysis of the TCP gene family and their expression pattern in Cymbidium goeringii
Frontiers in Plant Science
2022
Genome-wide meta-QTL analyses provide novel insight into disease resistance repertoires in common bean
BMC Genomics
2022
Machine learning for the micropeptide encoded by LINC02381 regulates ferroptosis through the glucose transporter SLC2A10 in glioblastoma
BMC Cancer
2022
Genetic diversity and population structure of six autochthonous pig breeds from Croatia, Serbia, and Slovenia
Genetics Selection Evolution
2022
Widespread and transgenerational retrotransposon activation in inter‐ and intraspecies recombinant inbred populations of Lotus japonicus
The Plant Journal
2022
Insights from the genomes of 4 diploid Camelina spp.
G3 Genes|Genomes|Genetics
2022
Genomic regions controlling yield-related traits in spring wheat: a mini review and a case study for rainfed environments in Australia and China
Genomics
2022
Genome-Wide Detection of Copy Number Variations and Evaluation of Candidate Copy Number Polymorphism Genes Associated With Complex Traits of Pigs
Frontiers in Veterinary Science
2022
A super pan-genomic landscape of rice
Cell Research
2022
Screening of Genes Related to Sex Determination and Differentiation in Mandarin Fish (Siniperca chuatsi)
International Journal of Molecular Sciences
2022
High Expression of HERV-K (HML-2) Might Stimulate Interferon in COVID-19 Patients
Viruses
2022
Large-scale chromatin reorganization reactivates placenta-specific genes that drive cellular aging
Developmental Cell
2022
Mapping of Nonhomologous End Joining-Mediated Integration Facilitates Genome-Scale Trackable Mutagenesis in Yarrowia lipolytica
ACS Synthetic Biology
2022
The Construction and Analysis of Infiltrating Immune Cell and ceRNA Networks in Diabetic Foot Ulcer
Frontiers in Endocrinology
2022
Comparative Methylome Analysis Reveals Epigenetic Signatures Associated with Growth and Shell Color in the Pacific Oyster, Crassostrea gigas
Marine Biotechnology
2022
Omics in Horticultural Crops
2022
Widespread expression of the ancient HERV-K (HML-2) provirus group in normal human tissues
PLOS Biology
2022
Relationship between ATOH1 and tumor microenvironment in colon adenocarcinoma patients with different microsatellite instability status
Cancer Cell International
2022
The evolutionary path of chemosensory and flagellar macromolecular machines in Campylobacterota
PLOS Genetics
2022
Large-scale discovery of non-conventional peptides in grape (Vitis vinifera L.) through peptidogenomics
Horticulture Research
2022
Genomic prediction of drought tolerance during seedling stage in maize using low-cost molecular markers
Euphytica
2022
From telomere to telomere: The transcriptional and epigenetic state of human repeat elements
Science
2022
Mapping and identification of quantitative trait loci controlling test weight and seed yield of pearl millet in multi agro-climatic zones of India
Field Crops Research
2022
Genomic prediction of the performance of hybrids and the combining abilities for line by tester trials in maize
The Crop Journal
2022
Comprehensive bioinformatics analysis reveals biomarkers of DNA methylation-related genes in varicose veins
Frontiers in Genetics
2022
Genetic Variation and Stability Analysis of an Artificially Synthesized Allohexaploid Brassica for Breeding Innovations
Agronomy
2022
An atlas of fish genome evolution reveals delayed rediploidization following the teleost whole-genome duplication
Genome Research
2022
A Chromosome-Level Genome of the Camphor Tree and the Underlying Genetic and Climatic Factors for Its Top-Geoherbalism
Frontiers in Plant Science
2022
Identification of sex chromosomes and primary sex ratio in the small hive beetle, a worldwide parasite of honey bees
GigaScience
2022
Widespread genetic heterogeneity of human ribosomal RNA genes
RNA
2022
Chromosome-scale genome assembly of the brown anole (Anolis sagrei), an emerging model species
Communications Biology
2022
In Silico Genome-Wide Characterisation of the Lipid Transfer Protein Multigenic Family in Sunflower (H. annuus L.)
Plants
2022
A Map of 3′ DNA Transduction Variants Mediated by Non-LTR Retroelements on 3202 Human Genomes
Biology
2022
The genomic basis of the plant island syndrome in Darwin’s giant daisies
Nature Communications
2022
Using Excel Mapper to Design Chromosome Idiograms
The American Biology Teacher
2022
The Genomic Basis of Evolutionary Novelties in a Leafhopper
Molecular Biology and Evolution
2022
Long-read and chromosome-scale assembly of the hexaploid wheat genome achieves high resolution for research and breeding
GigaScience
2022
De novo genome assembly and in natura epigenomics reveal salinity‐induced DNA methylation in the mangrove tree Bruguiera gymnorhiza
New Phytologist
2022
Introgression of the Triticum timopheevii Genome Into Wheat Detected by Chromosome-Specific Kompetitive Allele Specific PCR Markers
Frontiers in Plant Science
2022
The genetic architecture of phenotypic diversity in the Betta fish ( Betta splendens )
Science Advances
2022
Repeat-based holocentromeres influence genome architecture and karyotype evolution
Cell
2022
DYSF promotes monocyte activation in atherosclerotic cardiovascular disease as a DNA methylation-driven gene
Translational Research
2022
Analysis of recent shared ancestry in a familial cohort identifies coding and noncoding autism spectrum disorder variants
npj Genomic Medicine
2022
Evolutionary Principles of Bacterial Signaling Capacity and Complexity
mBio
2021
High-quality reference genome and annotation aids understanding of berry development for evergreen blueberry (Vaccinium darrowii)
Horticulture Research
2021
ThePharus latifoliusgenome bridges the gap of early grass evolution
The Plant Cell
2021
Genome-wide integration site detection using Cas9 enriched amplification-free long-range sequencing
Nucleic Acids Research
2021
Combined inhibition of Aurora-A and ATR kinases results in regression of MYCN-amplified neuroblastoma
Nature Cancer
2021
Genome-Wide Identification and Comprehensive Analyses of TCP Gene Family in Banana (Musa L.)
Tropical Plant Biology
2021
Genome-wide copy number variation analysis of hepatitis B infection in a Japanese population
Human Genome Variation
2021
N6-Methyladenosine Methylomic Landscape of Lung Tissues in Murine Acute Allergic Asthma
Frontiers in Immunology
2021
Transcriptomics analysis for the identification of potential age-related genes and cells associated with three major urogenital cancers
Scientific Reports
2021
Genome-Wide Identification and Characterization of the IGT Gene Family in Allotetraploid Rapeseed (Brassica napus L.)
DNA and Cell Biology
2021
Improvement, identification, and target prediction for miRNAs in the porcine genome by using massive, public high-throughput sequencing data
Journal of Animal Science
2021
Dynamic Diversity of NLR Genes in Triticum and Mining of Promising NLR Alleles for Disease Resistance
Current Issues in Molecular Biology
2021
Accessible chromatin reveals regulatory mechanisms underlying cell fate decisions during early embryogenesis
Scientific Reports
2021
Comprehensive Genome-Wide Exploration of C2H2 Zinc Finger Family in Grapevine (Vitis vinifera L.): Insights into the Roles in the Pollen Development Regulation
Genes
2021
ClineHelpR: an R package for genomic cline outlier detection and visualization
BMC Bioinformatics
2021
Genome-wide characterization, evolution, structure, and expression analysis of the F-box genes in Caenorhabditis
BMC Genomics
2021
Modulation of Global Gene Expression by Aneuploidy and CNV of Dosage Sensitive Regulatory Genes
Genes
2021
Unraveling the Complex Hybrid Ancestry and Domestication History of Cultivated Strawberry
Molecular Biology and Evolution
2021
Stabilization of heterochromatin by CLOCK promotes stem cell rejuvenation and cartilage regeneration
Cell Research
2021
Alteration of mRNA 5-Methylcytosine Modification in Neurons After OGD/R and Potential Roles in Cell Stress Response and Apoptosis
Frontiers in Genetics
2021
Chromosome-level genome assembly of the blue crab,Callinectes sapidus
G3 Genes|Genomes|Genetics
2021
The Pontastacus leptodactylus (Astacidae) Repeatome Provides Insight Into Genome Evolution and Reveals Remarkable Diversity of Satellite DNA
Frontiers in Genetics
2021
Chromosome-level de novo assembly of Coprinopsis cinerea A43mut B43mut pab1-1 #326 and genetic variant identification of mutants using Nanopore MinION sequencing
Fungal Genetics and Biology
2021
Genome-Wide Comparative Analysis of Flowering-Time Genes; Insights on the Gene Family Expansion and Evolutionary Perspective
Frontiers in Plant Science
2021
Evolutionary Profile for (Host and Viral) MLKL Indicates Its Activities as a Battlefront for Extensive Counteradaptation
Molecular Biology and Evolution
2021
miR‑124 promotes apoptosis and inhibits the proliferation of vessel endothelial cells through P38/MAPK and PI3K/AKT pathways, making it a potential mechanism of vessel endothelial injury in acute myocardial infarction
Experimental and Therapeutic Medicine
2021
Chromosomal Characterization of Tripidium arundinaceum Revealed by Oligo-FISH
International Journal of Molecular Sciences
2021
Vertebrate Chromosome Evolution
Annual Review of Animal Biosciences
2021
Annual Plant Reviews online
2021
The human melanoma proteome atlas—Defining the molecular pathology
Clinical and Translational Medicine
2021
Genomic analysis of ionome-related QTLs in Arabidopsis thaliana
Scientific Reports
2021
Genome sequencing of 320 Chinese children with epilepsy: a clinical and molecular study
Brain
2021
Identification of Potential Biomarkers for Psoriasis by DNA Methylation and Gene Expression Datasets
Frontiers in Genetics
2020
Genetic Characterization of Multiple Components Contributing to Fusarium Head Blight Resistance of FL62R1, a Canadian Bread Wheat Developed Using Systemic Breeding
Frontiers in Plant Science
2020
Genome-Wide Association Analysis Identifies Resistance Loci for Bacterial Leaf Streak Resistance in Rice (Oryza sativa L.)
Plants
2020
Contrasting signatures of introgression in North American box turtle (Terrapene spp.) contact zones
Molecular Ecology
2020
Genome wide screening and comparative genome analysis for Meta-QTLs, ortho-MQTLs and candidate genes controlling yield and yield-related traits in rice
BMC Genomics
2020
An integration analysis based on genomic, transcriptomic and QTX information reveals credible candidate genes for fat‐related traits in pigs
Animal Genetics
2020
Transcriptome and genome sequencing elucidates the molecular basis for the high yield and good quality of the hybrid rice variety Chuanyou6203
Scientific Reports
2020
Identification of diagnostic DNA methylation biomarkers specific for early-stage lung adenocarcinoma
Cancer Genetics
2020
Current State and Perspectives in Population Genomics of the Common Bean
Plants
2020
A chromosome‐level genome assembly of the parasitoid wasp Pteromalus puparum
Molecular Ecology Resources
2020
Human Endogenous Retrovirus K (HML-2) in Health and Disease
Frontiers in Microbiology
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