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2025	Improved Hybrid Approach for Enhancing Protein-Coding Regions Identification in DNA Sequences Current Bioinformatics Emad S. Hassan, Ahmed M. Dessouky, Hesham Fathi, Gerges M. Salama, Ahmed S. Oshaba, Atef El-Emary, Fathi E. Abd El‑Samie
2025	Methods in Molecular Biology Quang Hien Kha, Huu Phuc Lam Nguyen, Nguyen Quoc Khanh Le
2025	Integrating CNN and Bi-LSTM for protein succinylation sites prediction based on Natural Language Processing technique Computers in Biology and Medicine Thi-Xuan Tran, Nguyen Quoc Khanh Le, Van-Nui Nguyen
2024	Early detection of abiotic stress in plants through SNARE proteins using hybrid feature fusion model PeerJ Computer Science Bhargavi T., Sumathi D.
2024	Molecular sequence classification using efficient kernel based embedding Information Sciences Sarwan Ali, Tamkanat E. Ali, Taslim Murad, Haris Mansoor, Murray Patterson
2024	AdaptorPro:A Deep Learning Approach for Accurate Identification of Adaptor Proteins VFAST Transactions on Software Engineering Waqas Ahmed, Sibgha Rauf, Nosheen Sabahat
2024	Choosing an appropriate somatic embryogenesis medium of carrot (Daucus carota L.) by data mining technology BMC Biotechnology Masoumeh Fallah Ziarani, Masoud Tohidfar, Mohsen Hesami
2023	2023 5th International Conference on Advances in Computing, Communication Control and Networking (ICAC3N) Vikash Kumar, Amit Kumar, Prateek Raj Gautam
2023	iPro-TCN: Prediction of DNA Promoters Recognition and Their Strength Using Temporal Convolutional Network IEEE Access Ali Raza, Waleed Alam, Shahzad Khan, Muhammad Tahir, Kil To Chong
2023	Proceedings of the 14th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics Nguyen Quoc Khanh Le, Quang Hien Kha
2023	Prediction of anticancer peptides based on an ensemble model of deep learning and machine learning using ordinal positional encoding Briefings in Bioinformatics Qitong Yuan, Keyi Chen, Yimin Yu, Nguyen Quoc Khanh Le, Matthew Chin Heng Chua
2022	VTP-Identifier: Vesicular Transport Proteins Identification Based on PSSM Profiles and XGBoost Frontiers in Genetics Yue Gong, Benzhi Dong, Zixiao Zhang, Yixiao Zhai, Bo Gao, Tianjiao Zhang, Jingyu Zhang
2022	Identifying SNARE Proteins Using an Alignment-Free Method Based on Multiscan Convolutional Neural Network and PSSM Profiles Journal of Chemical Information and Modeling Quang-Hien Kha, Quang-Thai Ho, Nguyen Quoc Khanh Le
2022	A SNARE Protein Identification Method Based on iLearnPlus to Efficiently Solve the Data Imbalance Problem Frontiers in Genetics Dong Ma, Zhihua Chen, Zhanpeng He, Xueqin Huang
2022	Identification of the ubiquitin–proteasome pathway domain by hyperparameter optimization based on a 2D convolutional neural network Frontiers in Genetics Rahu Sikander, Muhammad Arif, Ali Ghulam, Apilak Worachartcheewan, Maha A. Thafar, Shabana Habib
2022	IAV-CNN: A 2D Convolutional Neural Network Model to Predict Antigenic Variants of Influenza A Virus IEEE/ACM Transactions on Computational Biology and Bioinformatics Rui Yin, Nyi Nyi Thwin, Pei Zhuang, Zhuoyi Lin, Chee Keong Kwoh
2022	A GHKNN model based on the physicochemical property extraction method to identify SNARE proteins Frontiers in Genetics Xingyue Gu, Yijie Ding, Pengfeng Xiao, Tao He
2022	SNARER: new molecular descriptors for SNARE proteins classification BMC Bioinformatics Alessia Auriemma Citarella, Luigi Di Biasi, Michele Risi, Genoveffa Tortora
2022	DBP-CNN: Deep learning-based prediction of DNA-binding proteins by coupling discrete cosine transform with two-dimensional convolutional neural network Expert Systems with Applications Omar Barukab, Farman Ali, Wajdi Alghamdi, Yoosef Bassam, Sher Afzal Khan
2021	Full depth CNN classifier for handwritten and license plate characters recognition PeerJ Computer Science Mohammed Salemdeeb, Sarp Ertürk
2021	DLFF-ACP: prediction of ACPs based on deep learning and multi-view features fusion PeerJ Ruifen Cao, Meng Wang, Yannan Bin, Chunhou Zheng
2021	DBP-GAPred: An intelligent method for prediction of DNA-binding proteins types by enhanced evolutionary profile features with ensemble learning Journal of Bioinformatics and Computational Biology Omar Barukab, Farman Ali, Sher Afzal Khan
2021	Gutter oil detection for food safety based on multi-feature machine learning and implementation on FPGA with approximate multipliers PeerJ Computer Science Wei Jiang, Yuhanxiao Ma, Ruiqi Chen
2021	A deep learning algorithm to detect coronavirus (COVID-19) disease using CT images PeerJ Computer Science Mojtaba Mohammadpoor, Mehran Sheikhi karizaki, Mina Sheikhi karizaki
2021	Deep Learning Algorithms Achieved Satisfactory Predictions When Trained on a Novel Collection of Anticoronavirus Molecules Frontiers in Genetics Emna Harigua-Souiai, Mohamed Mahmoud Heinhane, Yosser Zina Abdelkrim, Oussama Souiai, Ines Abdeljaoued-Tej, Ikram Guizani
2021	Improving protein domain classification for third-generation sequencing reads using deep learning BMC Genomics Nan Du, Jiayu Shang, Yanni Sun
2021	Genetic variations analysis for complex brain disease diagnosis using machine learning techniques: opportunities and hurdles PeerJ Computer Science Hala Ahmed, Louai Alarabi, Shaker El-Sappagh, Hassan Soliman, Mohammed Elmogy
2021	SNAREs-SAP: SNARE Proteins Identification With PSSM Profiles Frontiers in Genetics Zixiao Zhang, Yue Gong, Bo Gao, Hongfei Li, Wentao Gao, Yuming Zhao, Benzhi Dong
2021	Deep Learning Analysis of CT Images Reveals High-Grade Pathological Features to Predict Survival in Lung Adenocarcinoma Cancers Yeonu Choi, Jaehong Aum, Se-Hoon Lee, Hong-Kwan Kim, Jhingook Kim, Seunghwan Shin, Ji Yun Jeong, Chan-Young Ock, Ho Yun Lee
2021	Twin self-supervision based semi-supervised learning (TS-SSL): Retinal anomaly classification in SD-OCT images Neurocomputing Yuhan Zhang, Mingchao Li, Zexuan Ji, Wen Fan, Songtao Yuan, Qinghuai Liu, Qiang Chen
2021	Using a Hybrid Neural Network Model DCNN–LSTM for Image-Based Nitrogen Nutrition Diagnosis in Muskmelon Horticulturae Liying Chang, Daren Li, Muhammad Khalid Hameed, Yilu Yin, Danfeng Huang, Qingliang Niu
2021	Identification of Enzymes-specific Protein Domain Based on DDE, and Convolutional Neural Network Frontiers in Genetics Rahu Sikander, Yuping Wang, Ali Ghulam, Xianjuan Wu
2021	Diagnosis of vertebral column pathologies using concatenated resampling with machine learning algorithms PeerJ Computer Science Aijaz Ahmad Reshi, Imran Ashraf, Furqan Rustam, Hina Fatima Shahzad, Arif Mehmood, Gyu Sang Choi
2021	Introspective analysis of convolutional neural networks for improving discrimination performance and feature visualisation PeerJ Computer Science Shakeel Shafiq, Tayyaba Azim
2020	Augmented EMTCNN: A Fast and Accurate Facial Landmark Detection Network Applied Sciences Hyeon-Woo Kim, Hyung-Joon Kim, Seungmin Rho, Eenjun Hwang
2020	A KNN Model Based on Manhattan Distance to Identify the SNARE Proteins IEEE Access Xing Gao, Guilin Li
2020	Identification of SNARE Proteins Through a Novel Hybrid Model IEEE Access Guilin Li
2020	DeepETC: A deep convolutional neural network architecture for investigating and classifying electron transport chain's complexes Neurocomputing Nguyen Quoc Khanh Le, Quang-Thai Ho, Edward Kien Yee Yapp, Yu-Yen Ou, Hui-Yuan Yeh
2019	EnContact: predicting enhancer-enhancer contacts using sequence-based deep learning model PeerJ Mingxin Gan, Wenran Li, Rui Jiang
2019	OutbreakFinder: a visualization tool for rapid detection of bacterial strain clusters based on optimized multidimensional scaling PeerJ Ming-Hsin Tsai, Yen-Yi Liu, Chih-Chieh Chen
2019	Identification of clathrin proteins by incorporating hyperparameter optimization in deep learning and PSSM profiles Computer Methods and Programs in Biomedicine Nguyen Quoc Khanh Le, Tuan-Tu Huynh, Edward Kien Yee Yapp, Hui-Yuan Yeh
2019	Identifying SNAREs by Incorporating Deep Learning Architecture and Amino Acid Embedding Representation Frontiers in Physiology Nguyen Quoc Khanh Le, Tuan-Tu Huynh
2019	Computational identification of vesicular transport proteins from sequences using deep gated recurrent units architecture Computational and Structural Biotechnology Journal Nguyen Quoc Khanh Le, Edward Kien Yee Yapp, N. Nagasundaram, Matthew Chin Heng Chua, Hui-Yuan Yeh
2019	Improving clinical refractive results of cataract surgery by machine learning PeerJ Martin Sramka, Martin Slovak, Jana Tuckova, Pavel Stodulka
2019	Classifying Promoters by Interpreting the Hidden Information of DNA Sequences via Deep Learning and Combination of Continuous FastText N-Grams Frontiers in Bioengineering and Biotechnology Nguyen Quoc Khanh Le, Edward Kien Yee Yapp, N. Nagasundaram, Hui-Yuan Yeh
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