Peer-reviewed Articles

9 citations
1,276 downloads
2,580 views

Online news reading has become a widely popular way to read news articles from news sources around the globe. With the enormous amount of news articles available, users are easily overwhelmed by information of little interest to them. News recommender systems help...

["Agents and Multi-Agent Systems","World Wide Web and Web Science"]
doi:10.7717/peerj-cs.63
8 citations
526 downloads
2,276 views

Software process improvement (SPI) has been around for decades: frameworks are proposed, success factors are studied, and experiences have been reported. However, the sheer mass of concepts, approaches, and standards published over the years overwhelms practitioners...

["Software Engineering"]
doi:10.7717/peerj-cs.62
3 citations
284 downloads
1,870 views

Ebooks of the future may respond to the emotional experience of the reader. (Neuro-) physiological measures could capture a reader’s emotional state and use this to enhance the reading experience by adding matching sounds or to change the storyline therewith creating...

["Brain-Computer Interface","Human-Computer Interaction","Multimedia"]
doi:10.7717/peerj-cs.60
2 citations
317 downloads
2,935 views

Annotation of bioassay protocols using semantic web vocabulary is a way to make experiment descriptions machine-readable. Protocols are communicated using concise scientific English, which precludes most kinds of analysis by software algorithms. Given the availability...

["Bioinformatics","Computational Biology","Human-Computer Interaction","Data Science"]
doi:10.7717/peerj-cs.61
3 citations
302 downloads
1,382 views

We study the interplay between a dynamical process and the structure of the network on which it unfolds using the parameterized Laplacian framework. This framework allows for defining and characterizing an ensemble of dynamical processes on a network beyond what...

["Network Science and Online Social Networks"]
doi:10.7717/peerj-cs.57
8 citations
242 downloads
1,553 views

Scaling up psychotherapy services such as for addiction counseling is a critical societal need. One challenge is ensuring quality of therapy, due to the heavy cost of manual observational assessment. This work proposes a speech technology-based system to automate...

["Computational Linguistics","Emerging Technologies","Human-Computer Interaction","Natural Language and Speech"]
doi:10.7717/peerj-cs.59
230 downloads
1,178 views

Identifying a temporal pattern of events is a fundamental task of online (real-time) verification. We present efficient schemes for online monitoring of events for identifying desired/undesired patterns of events. The schemes use preprocessing to ensure that the...

["Algorithms and Analysis of Algorithms","Theory and Formal Methods"]
doi:10.7717/peerj-cs.53
3 citations
573 downloads
1,969 views

We consider the problem of detecting and quantifying the periodic component of a function given noise-corrupted observations of a limited number of input/output tuples. Our approach is based on Gaussian process regression, which provides a flexible non-parametric...

["Data Mining and Machine Learning","Optimization Theory and Computation"]
doi:10.7717/peerj-cs.50
1 citation
419 downloads
1,314 views

Matrix Depot is a Julia software package that provides easy access to a large and diverse collection of test matrices. Its novelty is threefold. First, it is extensible by the user, and so can be adapted to include the user’s own test problems. In doing so, it...

["Algorithms and Analysis of Algorithms","Data Science","Scientific Computing and Simulation"]
doi:10.7717/peerj-cs.58
42 citations
4,078 downloads
24,314 views

Probabilistic programming allows for automatic Bayesian inference on user-defined probabilistic models. Recent advances in Markov chain Monte Carlo (MCMC) sampling allow inference on increasingly complex models. This class of MCMC, known as Hamiltonian Monte Carlo,...

["Data Mining and Machine Learning","Data Science","Scientific Computing and Simulation"]
doi:10.7717/peerj-cs.55
7 citations
969 downloads
3,214 views

In this work, DAE Tools modelling, simulation and optimisation software, its programming paradigms and main features are presented. The current approaches to mathematical modelling such as the use of modelling languages and general-purpose programming languages...

["Scientific Computing and Simulation"]
doi:10.7717/peerj-cs.54
175 downloads
1,014 views

Research has suggested that adding contextual information such as reference markers to data sonification can improve interaction with auditory graphs. This paper presents results of an experiment that contributes to quantifying and analysing the extent of such...

["Human-Computer Interaction"]
doi:10.7717/peerj-cs.51
1 citation
480 downloads
2,192 views

PhilDB is an open-source time series database that supports storage of time series datasets that are dynamic; that is, it records updates to existing values in a log as they occur. PhilDB eases loading of data for the user by utilising an intelligent data write...

["Data Science","Databases"]
doi:10.7717/peerj-cs.52
2 citations
416 downloads
1,652 views

Background. The monophyly of taxa is an important attribute of a phylogenetic tree. A lack of it may hint at shortcomings of either the tree or the current taxonomy, or can indicate cases of incomplete lineage sorting or horizontal gene transfer. Whichever is the...

["Bioinformatics","Computational Biology"]
doi:10.7717/peerj-cs.56
401 downloads
1,357 views

An object-oriented computational framework for the transformation of colour data and colour metric tensors is presented. The main idea of the design is to represent the transforms between spaces as compositions of objects from a class hierarchy providing the methods...

["Computer Vision","Graphics","Optimization Theory and Computation","Scientific Computing and Simulation","Software Engineering"]
doi:10.7717/peerj-cs.48

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