Peer-reviewed Articles

307 downloads
1,757 views

Objects of more than three dimensions can be used to model geographic phenomena that occur in space, time and scale. For instance, a single 4D object can be used to represent the changes in a 3D object’s shape across time or all its optimal representations at various...

["Graphics","Scientific Computing and Simulation","Spatial and Geographic Information Systems"]
doi:10.7717/peerj-cs.123
330 downloads
1,698 views

Despite recent algorithmic improvements, learning the optimal structure of a Bayesian network from data is typically infeasible past a few dozen variables. Fortunately, domain knowledge can frequently be exploited to achieve dramatic computational savings, and...

["Artificial Intelligence","Data Mining and Machine Learning","Data Science","Distributed and Parallel Computing"]
doi:10.7717/peerj-cs.122
394 downloads
2,223 views

Motivation Scientists increasingly rely on intelligent information systems to help them in their daily tasks, in particular for managing research objects, like publications or datasets. The relatively young research field of Semantic Publishing has been addressing...

["Human-Computer Interaction","Artificial Intelligence","Data Mining and Machine Learning","Digital Libraries"]
doi:10.7717/peerj-cs.121
2 citations
496 downloads
3,100 views

The ability to promptly recognise new research trends is strategic for many stakeholders, including universities, institutional funding bodies, academic publishers and companies. While the literature describes several approaches which aim to identify the emergence...

["Artificial Intelligence","Data Science","Digital Libraries"]
doi:10.7717/peerj-cs.119
2 citations
292 downloads
2,019 views

Whole genome alignments and comparative analysis are key methods in the quest of unraveling the dynamics of genome evolution. Interactive visualization and exploration of the generated alignments, annotations, and phylogenetic data are important steps in the interpretation...

["Bioinformatics","Computational Biology"]
doi:10.7717/peerj-cs.116
1 citation
385 downloads
1,654 views

Background Large-scale molecular evolutionary analyses of protein coding sequences requires a number of preparatory inter-related steps from finding gene families, to generating alignments and phylogenetic trees and assessing selective pressure variation. Each...

["Bioinformatics","Computational Biology"]
doi:10.7717/peerj-cs.118
275 downloads
1,233 views

Shotgun metagenomics of microbial communities reveal information about strains of relevance for applications in medicine, biotechnology and ecology. Recovering their genomes is a crucial but very challenging step due to the complexity of the underlying biological...

["Bioinformatics","Computational Biology","Data Science"]
doi:10.7717/peerj-cs.117
237 downloads
1,166 views

The ever-growing amount of data produced by and in today’s smart cities offers significant potential for novel applications created by city stakeholders as well as third parties. Current smart city application models mostly assume that data is exclusively managed...

["Distributed and Parallel Computing","Software Engineering"]
doi:10.7717/peerj-cs.115
7 citations
1,880 downloads
3,055 views

The rapid growth of small Internet connected devices, known as the Internet of Things (IoT), is creating a new set of challenges to create secure, private infrastructures. This paper reviews the current literature on the challenges and approaches to security and...

["Computer Networks and Communications","Embedded Computing","Real-Time and Embedded Systems","Security and Privacy","World Wide Web and Web Science"]
doi:10.7717/peerj-cs.114
1 citation
1,599 downloads
5,305 views

The timely publication of scientific results is essential for dynamic advances in science. The ubiquitous availability of computers which are connected to a global network made the rapid and low-cost distribution of information through electronic channels possible....

["Computer Education","Computer Networks and Communications","Digital Libraries","Human-Computer Interaction","World Wide Web and Web Science"]
doi:10.7717/peerj-cs.112
8 citations
1,452 downloads
36,786 views

Biases against women in the workplace have been documented in a variety of studies. This paper presents a large scale study on gender bias, where we compare acceptance rates of contributions from men versus women in an open source software community. Surprisingly,...

["Human-Computer Interaction","Social Computing","Programming Languages","Software Engineering"]
doi:10.7717/peerj-cs.111
3 citations
279 downloads
1,697 views

We developed a web-based cloud-hosted system that allow users to archive, listen, visualize, and annotate recordings. The system also provides tools to convert these annotations into datasets that can be used to train a computer to detect the presence or absence...

["Bioinformatics","Computational Biology","Data Mining and Machine Learning"]
doi:10.7717/peerj-cs.113
4 citations
659 downloads
3,669 views

Data in the life sciences are extremely diverse and are stored in a broad spectrum of repositories ranging from those designed for particular data types (such as KEGG for pathway data or UniProt for protein data) to those that are general-purpose (such as FigShare,...

["Bioinformatics","Data Science","Databases","Emerging Technologies","World Wide Web and Web Science"]
doi:10.7717/peerj-cs.110
439 downloads
1,803 views

Music transcription involves the transformation of an audio recording to common music notation, colloquially referred to as sheet music. Manually transcribing audio recordings is a difficult and time-consuming process, even for experienced musicians. In response,...

["Data Mining and Machine Learning","Data Science"]
doi:10.7717/peerj-cs.109
2 citations
776 downloads
2,585 views

Electroencephalography (EEG) is a rich source of information regarding brain function. However, the preprocessing of EEG data can be quite complicated, due to several factors. For example, the distinction between true neural sources and noise is indeterminate;...

["Bioinformatics","Brain-Computer Interface"]
doi:10.7717/peerj-cs.108

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