Peer-reviewed Articles

27 downloads
191 views

The ability to promptly recognise new research trends is strategic for many stakeholders, including universities, institutional funding bodies, academic publishers and companies. While the literature describes several approaches which aim to identify the emergence...

["Artificial Intelligence","Data Science","Digital Libraries"]
doi:10.7717/peerj-cs.119
44 downloads
307 views

Whole genome alignments and comparative analysis are key methods in the quest of unraveling the dynamics of genome evolution. Interactive visualization and exploration of the generated alignments, annotations, and phylogenetic data are important steps in the interpretation...

["Bioinformatics","Computational Biology"]
doi:10.7717/peerj-cs.116
66 downloads
436 views

Background Large-scale molecular evolutionary analyses of protein coding sequences requires a number of preparatory inter-related steps from finding gene families, to generating alignments and phylogenetic trees and assessing selective pressure variation. Each...

["Bioinformatics","Computational Biology"]
doi:10.7717/peerj-cs.118
52 downloads
234 views

Shotgun metagenomics of microbial communities reveal information about strains of relevance for applications in medicine, biotechnology and ecology. Recovering their genomes is a crucial but very challenging step due to the complexity of the underlying biological...

["Bioinformatics","Computational Biology","Data Science"]
doi:10.7717/peerj-cs.117
47 downloads
384 views

The ever-growing amount of data produced by and in today’s smart cities offers significant potential for novel applications created by city stakeholders as well as third parties. Current smart city application models mostly assume that data is exclusively managed...

["Distributed and Parallel Computing","Software Engineering"]
doi:10.7717/peerj-cs.115
223 downloads
794 views

The rapid growth of small Internet connected devices, known as the Internet of Things (IoT), is creating a new set of challenges to create secure, private infrastructures. This paper reviews the current literature on the challenges and approaches to security and...

["Computer Networks and Communications","Embedded Computing","Real-Time and Embedded Systems","Security and Privacy","World Wide Web and Web Science"]
doi:10.7717/peerj-cs.114
249 downloads
1,683 views

The timely publication of scientific results is essential for dynamic advances in science. The ubiquitous availability of computers which are connected to a global network made the rapid and low-cost distribution of information through electronic channels possible....

["Human\u2013Computer Interaction","Computer Education","Computer Networks and Communications","Digital Libraries","World Wide Web and Web Science"]
doi:10.7717/peerj-cs.112
296 downloads
17,459 views

Biases against women in the workplace have been documented in a variety of studies. This paper presents a large scale study on gender bias, where we compare acceptance rates of contributions from men versus women in an open source software community. Surprisingly,...

["Human-Computer Interaction","Social Computing","Programming Languages","Software Engineering"]
doi:10.7717/peerj-cs.111
66 downloads
666 views

We developed a web-based cloud-hosted system that allow users to archive, listen, visualize, and annotate recordings. The system also provides tools to convert these annotations into datasets that can be used to train a computer to detect the presence or absence...

["Bioinformatics","Computational Biology","Data Mining and Machine Learning"]
doi:10.7717/peerj-cs.113
111 downloads
808 views

Data in the life sciences are extremely diverse and are stored in a broad spectrum of repositories ranging from those designed for particular data types (such as KEGG for pathway data or UniProt for protein data) to those that are general-purpose (such as FigShare,...

["Bioinformatics","Data Science","Databases","Emerging Technologies","World Wide Web and Web Science"]
doi:10.7717/peerj-cs.110
84 downloads
638 views

Music transcription involves the transformation of an audio recording to common music notation, colloquially referred to as sheet music. Manually transcribing audio recordings is a difficult and time-consuming process, even for experienced musicians. In response,...

["Data Mining and Machine Learning","Data Science"]
doi:10.7717/peerj-cs.109
180 downloads
930 views

Electroencephalography (EEG) is a rich source of information regarding brain function. However, the preprocessing of EEG data can be quite complicated, due to several factors. For example, the distinction between true neural sources and noise is indeterminate;...

["Bioinformatics","Brain\u2013Computer Interface"]
doi:10.7717/peerj-cs.108
161 downloads
897 views

Online Social Networks (OSNs) have been widely adopted as a means of news dissemination, event reporting, opinion expression and discussion. As a result, news and events are being constantly reported and discussed online through OSNs such as Twitter. However, the...

["Data Mining and Machine Learning","Network Science and Online Social Networks","Social Computing"]
doi:10.7717/peerj-cs.107
174 downloads
1,060 views

Metastatic cutaneous melanoma is an aggressive skin cancer with some progression-slowing treatments but no known cure. The omics data explosion has created many possible drug candidates; however, filtering criteria remain challenging, and systems biology approaches...

["Bioinformatics","Computational Biology","Data Science","World Wide Web and Web Science"]
doi:10.7717/peerj-cs.106
95 downloads
630 views

While most challenges organized so far in the Semantic Web domain are focused on comparing tools with respect to different criteria such as their features and competencies, or exploiting semantically enriched data, the Semantic Web Evaluation Challenges series,...

["Data Science","Digital Libraries","Emerging Technologies","World Wide Web and Web Science"]
doi:10.7717/peerj-cs.105

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