Peer-reviewed Articles

37 downloads
113 views

Numerical solutions of equation-based simulations require computationally intensive tasks such as evaluation of model equations, linear algebra operations and solution of systems of linear equations. The focus in this work is on parallel evaluation of model equations...

["Distributed and Parallel Computing","Scientific Computing and Simulation"]
doi:10.7717/peerj-cs.160
43 downloads
567 views

Background Several new programming languages and technologies have emerged in the past few decades in order to ease the task of modelling complex systems. Modelling the dynamics of complex systems requires various levels of abstractions and reductive measures in...

["Computational Biology","Scientific Computing and Simulation","Programming Languages"]
doi:10.7717/peerj-cs.159
90 downloads
521 views

Most of today’s scientific research relies on computers and software for processing scientific information. Examples of such computer-aided research are the analysis of experimental data or the simulation of phenomena based on theoretical models. With the rapid...

["Human-Computer Interaction","Digital Libraries","Scientific Computing and Simulation"]
doi:10.7717/peerj-cs.158
82 downloads
499 views

We study the problem of combining active learning suggestions to identify informative training examples by empirically comparing methods on benchmark datasets. Many active learning heuristics for classification problems have been proposed to help us pick which...

["Data Mining and Machine Learning"]
doi:10.7717/peerj-cs.157
89 downloads
725 views

The increased interest in analyzing and explaining gender inequalities in tech, media, and academia highlights the need for accurate inference methods to predict a person’s gender from their name. Several such services exist that provide access to large databases...

["Data Mining and Machine Learning","Data Science","Databases","Digital Libraries"]
doi:10.7717/peerj-cs.156
82 downloads
495 views

We describe the Coefficient-Flow algorithm for calculating the bounding chain of an $(n-1)$-boundary on an $n$-manifold-like simplicial complex $S$. We prove its correctness and show that it has a computational time complexity of O(|S(n−1)|) (where S(n−1) is the...

["Algorithms and Analysis of Algorithms","Data Science","Scientific Computing and Simulation"]
doi:10.7717/peerj-cs.153
93 downloads
497 views

Background Clustering is one of the most common techniques in data analysis and seeks to group together data points that are similar in some measure. Although there are many computer programs available for performing clustering, a single web resource that provides...

["Bioinformatics","Computational Biology"]
doi:10.7717/peerj-cs.155
162 downloads
578 views

A spatial data infrastructure (SDI) is a framework of geospatial data, metadata, users and tools intended to provide an efficient and flexible way to use spatial information. One of the key software components of an SDI is the catalogue service which is needed...

["Human-Computer Interaction","Spatial and Geographic Information Systems"]
doi:10.7717/peerj-cs.152
244 downloads
1,477 views

Cervical cancer remains a significant cause of mortality all around the world, even if it can be prevented and cured by removing affected tissues in early stages. Providing universal and efficient access to cervical screening programs is a challenge that requires...

["Bioinformatics","Computational Biology","Artificial Intelligence","Data Mining and Machine Learning"]
doi:10.7717/peerj-cs.154
70 downloads
479 views

The sparse matrix-vector product (SpMV) is a fundamental operation in many scientific applications from various fields. The High Performance Computing (HPC) community has therefore continuously invested a lot of effort to provide an efficient SpMV kernel on modern...

["Distributed and Parallel Computing","Scientific Computing and Simulation"]
doi:10.7717/peerj-cs.151
85 downloads
721 views

Over the last decades, clinical decision support systems have been gaining importance. They help clinicians to make effective use of the overload of available information to obtain correct diagnoses and appropriate treatments. However, their power often comes at...

["Data Mining and Machine Learning","Data Science","Optimization Theory and Computation"]
doi:10.7717/peerj-cs.150
159 downloads
1,116 views

Most of Python and R scientific packages incorporate compiled scientific libraries to speed up the code and reuse legacy libraries. While several semi-automatic solutions exist to wrap these compiled libraries, the process of wrapping a large library is cumbersome...

["Data Science","Scientific Computing and Simulation","Programming Languages","Software Engineering"]
doi:10.7717/peerj-cs.149
99 downloads
610 views

Background Labels are a way to add some information on a text, such as functional annotations such as genes on a DNA sequences. V(D)J recombinations are DNA recombinations involving two or three short genes in lymphocytes. Sequencing this short region (500 bp or...

["Bioinformatics","Computational Biology","Algorithms and Analysis of Algorithms"]
doi:10.7717/peerj-cs.148
131 downloads
1,053 views

The relationship between a driver’s glance orientation and corresponding head rotation is highly complex due to its nonlinear dependence on the individual, task, and driving context. This paper presents expanded analytic detail and findings from an effort that...

["Human-Computer Interaction","Data Mining and Machine Learning"]
doi:10.7717/peerj-cs.146
2 citations
434 downloads
3,755 views

This article describes the motivation, design, and progress of the Journal of Open Source Software (JOSS). JOSS is a free and open-access journal that publishes articles describing research software. It has the dual goals of improving the quality of the software...

["Data Science","Digital Libraries","Scientific Computing and Simulation","Software Engineering"]
doi:10.7717/peerj-cs.147

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