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2023	Isolation, Genomic Sequence and Physiological Characterization of Parageobacillus sp. G301, an Isolate Capable of Both Hydrogenogenic and Aerobic Carbon Monoxide Oxidation Applied and Environmental Microbiology Yoshinari Imaura, Shunsuke Okamoto, Taiki Hino, Yusuke Ogami, Yuka Adachi Katayama, Ayumi Tanimura, Masao Inoue, Ryoma Kamikawa, Takashi Yoshida, Yoshihiko Sako
2021	A comprehensive review of scaffolding methods in genome assembly Briefings in Bioinformatics Junwei Luo, Yawei Wei, Mengna Lyu, Zhengjiang Wu, Xiaoyan Liu, Huimin Luo, Chaokun Yan
2020	MEC: Misassembly Error Correction in Contigs based on Distribution of Paired-End Reads and Statistics of GC-contents IEEE/ACM Transactions on Computational Biology and Bioinformatics Binbin Wu, Min Li, Xingyu Liao, Junwei Luo, Fang-Xiang Wu, Yi Pan, Jianxin Wang
2020	Draft Genome Sequence of Thermanaeromonas sp. Strain C210, Isolated in the Presence of Carbon Monoxide Microbiology Resource Announcements Masao Inoue, Ayumi Tanimura, Yuto Fukuyama, Suguru Okunishi, Hiroto Maeda, Takashi Yoshida, Yoshihiko Sako
2020	Quantification of nosZ genes and transcripts in activated sludge microbiomes with novel group-specific qPCR methods validated with metagenomic analyses Water Research Daehyun D. Kim, Doyoung Park, Hyun Yoon, Taeho Yun, Min Joon Song, Sukhwan Yoon
2019	SCOP: a novel scaffolding algorithm based on contig classification and optimization Bioinformatics Min Li, Li Tang, Fang-Xiang Wu, Yi Pan, Jianxin Wang
2019	A Novel Scaffolding Algorithm Based on Contig Error Correction and Path Extension IEEE/ACM Transactions on Computational Biology and Bioinformatics Min Li, Li Tang, Zhongxiang Liao, Junwei Luo, Fang-Xiang Wu, Yi Pan, Jianxin Wang
2019	Complete Genome Sequence of Abscisic Acid-Metabolizing Rhizobacterium Rhodococcus sp. Strain P1Y Microbiology Resource Announcements Natalia E. Gogoleva, Yevgeny A. Nikolaichik, Timur T. Ismailov, Yuri A. Khlopko, Svetlana A. Dmitrieva, Tatiana A. Konnova, Taras S. Ermekkaliev, Vera I. Safronova, Andrey A. Belimov, Yuri V. Gogolev
2019	Modern technologies and algorithms for scaffolding assembled genomes PLOS Computational Biology Jay Ghurye, Mihai Pop
2019	Draft Genome Sequence of Parageobacillus thermoglucosidasius Strain TG4, a Hydrogenogenic Carboxydotrophic Bacterium Isolated from a Marine Sediment Microbiology Resource Announcements Masao Inoue, Ayumi Tanimura, Yusuke Ogami, Taiki Hino, Suguru Okunishi, Hiroto Maeda, Takashi Yoshida, Yoshihiko Sako
2019	Draft Genome Sequences of Two Thermophilic Moorella sp. Strains, Isolated from an Acidic Hot Spring in Japan Microbiology Resource Announcements Yuto Fukuyama, Ayumi Tanimura, Masao Inoue, Kimiho Omae, Takashi Yoshida, Yoshihiko Sako
2019	Complete genome sequence of the abscisic acid-utilizing strain Novosphingobium sp. P6W 3 Biotech Natalia E. Gogoleva, Yevgeny A. Nikolaichik, Timur T. Ismailov, Vladimir Y. Gorshkov, Vera I. Safronova, Andrey A. Belimov, Yuri Gogolev
2018	Tigmint: correcting assembly errors using linked reads from large molecules BMC Bioinformatics Shaun D. Jackman, Lauren Coombe, Justin Chu, Rene L. Warren, Benjamin P. Vandervalk, Sarah Yeo, Zhuyi Xue, Hamid Mohamadi, Joerg Bohlmann, Steven J.M. Jones, Inanc Birol
2017	2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Binbin Wu, Jianxin Wang, Junwei Luo, Min Li, Fangxiang Wu, Yi Pan
2016	MGP-HMM: Detecting genome-wide CNVs using an HMM for modeling mate pair insertion sizes and read counts Mathematical Biosciences Seyed Amir Malekpour, Hamid Pezeshk, Mehdi Sadeghi
2016	Next Generation Sequencing of Actinobacteria for the Discovery of Novel Natural Products Marine Drugs Juan Gomez-Escribano, Silke Alt, Mervyn Bibb
2016	Short communication: Heat-resistant Escherichia coli as potential persistent reservoir of extended-spectrum β-lactamases and Shiga toxin-encoding phages in dairy Journal of Dairy Science Roger Marti, Maite Muniesa, Michael Schmid, Christian H. Ahrens, Javorka Naskova, Jörg Hummerjohann
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