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2025
Characterizing biofilm thickness, density, and microbial community composition in a full-scale hybrid membrane aerated biofilm reactor
Bioresource Technology
2025
Eukaryotic biodiversity of sub-ice water in the marginal ice zone of the European Arctic: A multi-marker eDNA metabarcoding survey
Science of The Total Environment
2025
Microbial diversity and community structure of microalgae (Nannochloropsis oculata) and rotifer (Brachionus plicatilis) in aquaculture by 16S rRNA amplicon-based sequencing
Antonie van Leeuwenhoek
2025
Alteration of hydraulic rock properties during subsurface hydrogen methanation
International Journal of Hydrogen Energy
2025
The mycobiota of faeces from the critically endangered kākāpō and associated nest litter
New Zealand Journal of Zoology
2025
Metazoan Diversity and Its Drivers: An eDNA Survey in the Pacific Gateway of a Changing Arctic Ocean
Environmental DNA
2025
Increased host diversity limits bacterial generalism but may promote microbe-microbe interactions
ISME Communications
2025
Contrasting alpha, beta, and gamma diversity in the littoral zones of mountain lakes: effects of habitat size and within-lake community structuring on bacterial biogeography
FEMS Microbiology Ecology
2025
Impacts of Climate, Organic Management, and Degradation Status on Soil Biodiversity in Agroecosystems Worldwide
Global Change Biology
2025
Microbial biomass – not diversity – drives soil carbon and nitrogen mineralization in Spanish holm oak ecosystems
Geoderma
2025
Host traits and environmental variation shape gut microbiota diversity in wild threespine stickleback
Animal Microbiome
2025
Microbial community development in an oil sands pit lake
Science of The Total Environment
2025
Seasonal dynamics and pesticide impact on gut microbiome in Amynthas gracilis earthworms: A comparative study across agricultural landscapes assessed by 16S rRNA amplicon-based sequencing
Chemosphere
2025
Inoculation of apple plantlets with Rhodococcus pseudokoreensis R79T enhances diversity and modulates the structure of bacterial rhizosphere communities in soil affected by apple replant disease
BMC Plant Biology
2025
Trees shape the soil microbiome of a temperate agrosilvopastoral and syntropic agroforestry system
Scientific Reports
2025
Effect of temperature on microbial communities in bentonite for use in engineered barrier systems
mSphere
2025
How Do Environmental and Spatial Factors Influence Beta Diversity and Composition of Abundant and Rare Bacterioplankton Communities in Lakes From the Patagonian Plateaus?
Freshwater Biology
2025
Comparative Analysis of Protist Communities in Oilsands Tailings Using Amplicon Sequencing and Metagenomics
Environmental Microbiology
2025
Transient colonization by Priestia megaterium B1L5 alters the structure of the rhizosphere microbiome towards potential plant beneficial bacterial groups in apple plantlets
Environmental Microbiome
2025
Impact of Ketogenic and Mediterranean Diets on Gut Microbiota Profile and Clinical Outcomes in Drug-Naïve Patients with Diabesity: A 12-Month Pilot Study
Metabolites
2025
Exploring fecal microbial activity in zoo felids of varying body mass on a similar diet
BMC Microbiology
2025
Arbuscular mycorrhiza in the urban jungle: Glomeromycotina communities of the dominant city tree across Amsterdam
PLANTS, PEOPLE, PLANET
2025
Surveying marine biodiversity using eDNA metabarcoding of seawater and sediment in a high Arctic fjord during the polar night (Kongsfjorden, Svalbard)
Marine Environmental Research
2025
The N-shaped environmental Kuznets curve for biodiversity loss: A count data analysis
Energy & Environment
2025
Enhancing Emotional Intelligence in Autism Spectrum Disorder Through Intervention: A Systematic Review
European Journal of Investigation in Health, Psychology and Education
2025
Impacts of host phylogeny, diet, and geography on the gut microbiome of rodents
PLOS ONE
2025
Close encounters on a micro scale: microplastic sorption of polycyclic aromatic hydrocarbons and their potential effects on associated biofilm communities
Environmental Microbiome
2025
Restoration of the human skin microbiome following immune recovery after hematopoietic stem cell transplantation
Cell Host & Microbe
2024
Fungi associated with fine roots of Fraxinus excelsior affected by ash dieback detected by next-generation sequencing
Journal of Plant Diseases and Protection
2024
Biodegradation of poly(butylene adipate terephthalate) and poly(vinyl alcohol) within aquatic pathway
Science of The Total Environment
2024
The bladder microbiota is not significantly altered by intravesical BCG therapy
Urologic Oncology: Seminars and Original Investigations
2024
Climate change induces shifts in coastal Baltic Sea surface water microorganism stress and photosynthesis gene expression
Frontiers in Microbiology
2024
2024
Spatio-temporal changes of small protist and free-living bacterial communities in a temperate dimictic lake: insights from metabarcoding and machine learning
FEMS Microbiology Ecology
2024
Woody invaders of a temperate forest have unique root-associated fungal communities
Biological Invasions
2024
Biogeographic survey of soil bacterial communities across Antarctica
Microbiome
2024
Seasonality and longer-term development generate temporal dynamics in the Populus microbiome
mSystems
2024
Characterizing the microbial metagenome of calcareous stromatolite formations in the San Felipe Creek in the Anza Borrego Desert
Microbiology Resource Announcements
2024
Microbes and microplastics: Community shifts along an urban coastal contaminant gradient
Environmental Microbiology
2024
Efficacy of Postharvest Application of Aureobasidium pullulans to Control White Haze on Apples and Effect on the Fruit Mycobiome
Horticulturae
2024
Host ecotype and rearing environment are the main drivers of threespine stickleback gut microbiota diversity in a naturalistic experiment
Royal Society Open Science
2024
Metabarcoding reveals that arboreal habitats contribute significantly to nematode diversity in different forest ecosystems
Biodiversity and Conservation
2024
Local environment shapes milk microbiomes while evolutionary history constrains milk macronutrients in captive cercopithecine primates
Environmental Microbiology
2024
Structure of plankton and waterbird communities under water level fluctuations: two case studies in shallow lakes of the Patagonian steppe
Aquatic Sciences
2024
Waste not, want not: revisiting the analysis that called into question the practice of rarefaction
mSphere
2024
Exploración del microbioma intestinal de larvas de Zophobas morio (Coleoptera: Tenebrionidae) asociado a una dieta de poliestireno expandido
Acta Agronómica
2024
Warming increases the compositional and functional variability of a temperate protist community
Science of The Total Environment
2024
Efficacy of Essential Oil Vapours in Reducing Postharvest Rots and Effect on the Fruit Mycobiome of Nectarines
Journal of Fungi
2024
How important is food structure when cats eat mice?
British Journal of Nutrition
2024
Associations Between Gut Microbiota Diversity and a Host Fitness Proxy in a Naturalistic Experiment Using Threespine Stickleback Fish
Molecular Ecology
2024
Interindividual differences in aronia juice tolerability linked to gut microbiome and metabolome changes—secondary analysis of a randomized placebo-controlled parallel intervention trial
Microbiome
2024
Markers of fertility in reproductive microbiomes of male and female endangered black-footed ferrets (Mustela nigripes)
Communications Biology
2024
Differences in bacterial community composition between fish-stocked and fishless lakes from an arid Patagonian plateau
Hydrobiologia
2024
Co-occurrence network analysis reveals the alterations of the skin microbiome and metabolome in adults with mild to moderate atopic dermatitis
mSystems
2024
Gut Microbiota Uniqueness Is Associated with Lake Size, a Proxy for Diet Diversity, in Stickleback Fish
The American Naturalist
2024
Geographic variation and core microbiota composition of Anastrepha ludens (Diptera: Tephritidae) infesting a single host across latitudinal and altitudinal gradients
PeerJ
2024
Investigating pelagic biodiversity and gelatinous zooplankton communities in the rapidly changing European Arctic: An eDNA metabarcoding survey
Environmental DNA
2024
In-hospital areas with distinct maintenance and staff/patient traffic have specific microbiome profiles, functions, and resistomes
mSystems
2024
Responses of vascular plant fine roots and associated microbial communities to whole‐ecosystem warming and elevated CO2 in northern peatlands
New Phytologist
2024
Asynchronous patterns in soil bacterial diversity and functional potentials along an alpine altitudinal gradient
Frontiers in Microbiology
2024
More Than Meets the Eye: Unraveling the Interactions Between Skin Microbiota and Habitat in an Opportunistic Amphibian
Microbial Ecology
2024
Rarefaction is currently the best approach to control for uneven sequencing effort in amplicon sequence analyses
mSphere
2024
Microbiome convergence enables siderophore-secreting-rhizobacteria to improve iron nutrition and yield of peanut intercropped with maize
Nature Communications
2024
Dual stressors of infection and warming can destabilize host microbiomes
Philosophical Transactions of the Royal Society B: Biological Sciences
2024
The probiotic SLAB51 as agent to counteract BPA toxicity on zebrafish gut microbiota -liver-brain axis
Science of The Total Environment
2024
Phytoplankton ecology in the early years of a boreal oil sands end pit lake
Environmental Microbiome
2024
Deep nutrients and soil fungal communities support tomato fruit yield and quality in dry farm management systems
Environmental Research: Food Systems
2023
Mycobiome Shifts in Ulmus minor Stems After Infection with Beneficial and Pathogenic Fungi
Phytobiomes Journal
2023
Acute appendicitis manifests as two microbiome state types with oral pathogens influencing severity
Gut Microbes
2023
Characterization of the Bacterial Composition of 47 Fermented Foods in Sweden
Foods
2023
Pitfalls in the statistical analysis of microbiome amplicon sequencing data
Molecular Ecology Resources
2023
Cultivation potential of Vanilla crop wild relatives in two contrasting land use systems
European Journal of Agronomy
2023
Earthworm and soil microbial communities in flower strip mixtures
Plant and Soil
2023
A Bacillaceae consortium positively impacts arbuscular mycorrhizal fungus colonisation, plant phosphate nutrition, and tuber yield in Solanum tuberosum cv. Jazzy
Symbiosis
2023
Climate Warming Does Not Override Eutrophication, but Facilitates Nutrient Release from Sediment and Motivates Eutrophic Process
Microorganisms
2023
Microbial diversity in Antarctic Dry Valley soils across an altitudinal gradient
Frontiers in Microbiology
2023
Water quality determines protist taxonomic and functional group composition in a high-altitude wetland of international importance
Science of The Total Environment
2023
Association of Subjective and Objective Measures of Sleep With Gut Microbiota Composition and Diversity in Older Men: The Osteoporotic Fractures in Men Study
The Journals of Gerontology: Series A
2023
Bacterial topography of the upper and lower respiratory tract in pigs
Animal Microbiome
2023
Breed and ruminal fraction effects on bacterial and archaeal community composition in sheep
Scientific Reports
2023
Grapevines escaping trunk diseases in New Zealand vineyards have a distinct microbiome structure
Frontiers in Microbiology
2023
Distribution and diversity of anaerobic thermophiles and putative anaerobic nickel-dependent carbon monoxide-oxidizing thermophiles in mesothermal soils and sediments
Frontiers in Microbiology
2023
Systemic Analysis of the Spatiotemporal Changes in Multi‐Species Electroactive Biofilms to Clarify the Gradual Decline of Current Generation in Microbial Anodes
ChemElectroChem
2023
Vegetation, topography, and soil depth drive microbial community structure in two Swedish grasslands
FEMS Microbiology Ecology
2023
Patterns in soil microbial diversity across Europe
Nature Communications
2023
A DNA-barcode biodiversity standard analysis method (DNA-BSAM) reveals a large variance in the effect of a range of biological, chemical and physical soil management interventions at different sites, but location is one of the most important aspects determining the nature of agricultural soil microbiology
Soil Biology and Biochemistry
2023
Winners and Losers of Atlantification: The Degree of Ocean Warming Affects the Structure of Arctic Microbial Communities
Genes
2023
Assessing the environmental biosafety of phage-based biocontrol applications
Biological Control
2023
Effects of field inoculation of potato tubers with the arbuscular mycorrhizal fungus Rhizophagus irregularis DAOM 197198 are cultivar dependent
Symbiosis
2023
Diversity and function of soybean rhizosphere microbiome under nature farming
Frontiers in Microbiology
2023
Tree-distance and tree-species effects on soil biota in a temperate agroforestry system
Plant and Soil
2023
Fruit microbiome: A powerful tool to study the epidemiology of dry lenticel rot and white haze – Emerging postharvest diseases of apple
Postharvest Biology and Technology
2023
Connecting the multiple dimensions of global soil fungal diversity
Science Advances
2023
Equine sinusitis aetiology is linked to sinus microbiome by amplicon sequencing
Equine Veterinary Journal
2023
Microbiome convergence and deterministic community assembly along successional biocrust gradients on potash salt heaps
FEMS Microbiology Ecology
2023
High diversity of microsporidian parasites and new planktonic hosts in freshwater and marine ecosystems
Limnology and Oceanography
2023
Ecosystem type drives soil eukaryotic diversity and composition in Europe
Global Change Biology
2023
Application of Baltic Pine (Pinus sylvestris) Needle Extract as a Gut Microbiota-Modulating Feed Supplement for Domestic Chickens (Gallus gallus)
Plants
2023
The use of different 16S rRNA gene variable regions in biogeographical studies
Environmental Microbiology Reports
2023
Heavy Metal Pollution Impacts Soil Bacterial Community Structure and Antimicrobial Resistance at the Birmingham 35th Avenue Superfund Site
Microbiology Spectrum
2023
Peat loss collocates with a threshold in plant–mycorrhizal associations in drained peatlands encroached by trees
New Phytologist
2023
Longitudinal analysis at three oral sites links oral microbiota to clinical outcomes in allogeneic hematopoietic stem-cell transplant
Microbiology Spectrum
2023
Xanthomonas infection and ozone stress distinctly influence the microbial community structure and interactions in the pepper phyllosphere
ISME Communications
2023
Biotic and abiotic factors affecting the microbiota of Chrysomelidae inhabiting wetland vegetation
Hydrobiologia
2023
Gut microbiomes of captive primates show phylosymbiosis, respond to dietary sugar reduction, and select for host-specific dietary microbes
FEMS Microbiology Ecology
2023
Gut microbiota parallelism and divergence associated with colonisation of novel habitats
Molecular Ecology
2022
Correlating gut microbial membership to brown bear health metrics
Scientific Reports
2022
Spatial and temporal variation in New Hampshire bat diets
Scientific Reports
2022
Best practices in metabarcoding of fungi: From experimental design to results
Molecular Ecology
2022
Changes in coral forest microbiomes predict the impact of marine heatwaves on habitat-forming species down to mesophotic depths
Science of The Total Environment
2022
Methods in Molecular Biology
2022
Gut microbiota and metabolic changes towards improved gut health with supplementation of Woodfordia fruticosa, a medicinal plant: An in vitro study
Innovative Food Science & Emerging Technologies
2022
Influence of management practice on the microbiota of a critically endangered species: a longitudinal study of kākāpō chick faeces and associated nest litter
Animal Microbiome
2022
Stromatolite formation by Anaerolineae-dominated microbial communities in hot spring travertine in North Sumatra, Indonesia
Sedimentary Geology
2022
The travelling particles: community dynamics of biofilms on microplastics transferred along a salinity gradient
ISME Communications
2022
Epidemiology of Yam Viruses in Guadeloupe: Role of Cropping Practices and Seed-Tuber Supply
Viruses
2022
Choice of 16S Ribosomal RNA Primers Impacts Male Urinary Microbiota Profiling
Frontiers in Cellular and Infection Microbiology
2022
Infection by a eukaryotic gut parasite in wild Daphnia sp. associates with a distinct bacterial community
FEMS Microbiology Ecology
2022
Long-Term Warming of Baltic Sea Coastal Waters Affects Bacterial Communities in Bottom Water and Sediments Differently
Frontiers in Microbiology
2022
AMDB: a database of animal gut microbial communities with manually curated metadata
Nucleic Acids Research
2022
Exploring fine-scale assembly of ectomycorrhizal fungal communities through phylogenetic and spatial distribution analyses
Mycorrhiza
2022
Essential Oils Reduce Grey Mould Rot of Apples and Modify the Fruit Microbiome during Postharvest Storage
Journal of Fungi
2022
Milk microbiomes of three great ape species vary among host species and over time
Scientific Reports
2022
Normalization of clonal diversity in gene therapy studies using shape constrained splines
Scientific Reports
2022
Temporal variations of Microsporidia diversity and discovery of new host–parasite interactions in a lake ecosystem
Environmental Microbiology
2022
Intrinsic and extrinsic factors influence on an omnivore’s gut microbiome
PLOS ONE
2022
Assessing Fungal Diversity and Abundance in the Black Soldier Fly and its Environment
Journal of Insect Science
2022
Bacterial composition in the toheroa (Paphies ventricosa), a threatened surf clam from Aotearoa (New Zealand)
Marine Biology
2022
Contrasted microbial community colonization of a bauxite residue deposit marked by a complex geochemical context
Journal of Hazardous Materials
2022
Commensal oral microbiota impacts ulcerative oral mucositis clinical course in allogeneic stem cell transplant recipients
Scientific Reports
2022
Long-term mercury contamination does not affect the microbial gene potential for C and N cycling in soils but enhances detoxification gene abundance
Frontiers in Microbiology
2022
Dynamics of Gut Microbiota and Clinical Variables after Ketogenic and Mediterranean Diets in Drug-Naïve Patients with Type 2 Diabetes Mellitus and Obesity
Metabolites
2022
Human-provisioned foods reduce gut microbiome diversity in American black bears (Ursus americanus)
Journal of Mammalogy
2022
Soil bacterial community response to rhizoma peanut incorporation into Florida pastures
Journal of Environmental Quality
2022
Microbiome Dynamics During Chemoradiation Therapy for Anal Cancer
International Journal of Radiation Oncology*Biology*Physics
2022
Microbiome and pathobiome analyses reveal changes in community structure by foliar pathogen infection in rice
Frontiers in Microbiology
2022
The Gut Microbiome among Postmenopausal Latvian Women in Relation to Dietary Habits
Nutrients
2021
Early response of soil fungal communities to the conversion of monoculture cropland to a temperate agroforestry system
PeerJ
2021
Phylogeny- and Abundance-Based Metrics Allow for the Consistent Comparison of Core Gut Microbiome Diversity Indices Across Host Species
Frontiers in Microbiology
2021
Taxon-Specific Shifts in Bacterial and Archaeal Transcription of Dissolved Organic Matter Cycling Genes in a Stratified Fjord
mSystems
2021
Relative Abundances of Species or Sequence Variants Can Be Misleading: Soil Fungal Communities as an Example
Microorganisms
2021
Tree rows in temperate agroforestry croplands alter the composition of soil bacterial communities
PLOS ONE
2021
‘SRS’ R Package and ‘q2-srs’ QIIME 2 Plugin: Normalization of Microbiome Data Using Scaling with Ranked Subsampling (SRS)
Applied Sciences
2021
Structure and Long-Term Stability of the Microbiome in Diverse Diatom Cultures
Microbiology Spectrum
2020
2020
Analysis of microbial compositions: a review of normalization and differential abundance analysis
npj Biofilms and Microbiomes
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