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2025	Link node: A method to characterize the chain topology of intrinsically disordered proteins Quantitative Biology Danqi Lang, Le Chen, Moxin Zhang, Haoyu Song, Jingyuan Li
2025	Sequence‐Similar Protein Domain Pairs With Structural or Topological Dissimilarity Proteins: Structure, Function, and Bioinformatics Peter Røgen
2024	AlphaKnot 2.0: a web server for the visualization of proteins’ knotting and a database of knotted AlphaFold-predicted models Nucleic Acids Research Pawel Rubach, Maciej Sikora, Aleksandra I Jarmolinska, Agata P Perlinska, Joanna I Sulkowska
2023	The SKMT Algorithm: A method for assessing and comparing underlying protein entanglement PLOS Computational Biology Arron Bale, Robert Rambo, Christopher Prior
2023	Geophysical Monograph Series Christopher Prior, Arron N. Bale
2023	Topological links in predicted protein complex structures reveal limitations of AlphaFold Communications Biology Yingnan Hou, Tengyu Xie, Liuqing He, Liang Tao, Jing Huang
2021	Topoly: Python package to analyze topology of polymers Briefings in Bioinformatics Pawel Dabrowski-Tumanski, Pawel Rubach, Wanda Niemyska, Bartosz Ambrozy Gren, Joanna Ida Sulkowska
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