Citation sources

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2025
Vertebrate Ichnology
2025
Targeted pathogen profiling of ancient feces reveals common enteric infections in the Rio Zape Valley, 725–920 CE
PLOS One
2025
ParaRef: a decontaminated reference database for parasite detection in ancient and modern metagenomic datasets
Genome Biology
2025
Fecal lipid markers in tandem with ancient sedimentary DNA as a tool for tracing past livestock farming from soils and sediments
Frontiers in Environmental Archaeology
2025
Ancient microbial DNA and proteins preserve in concretions covering human remains
iScience
2024
Ultraconserved bacteriophage genome sequence identified in 1300-year-old human palaeofaeces
Nature Communications
2024
Intestinal Blastocystis is linked to healthier diets and more favorable cardiometabolic outcomes in 56,989 individuals from 32 countries
Cell
2024
Multiple approaches in the study of ancient human microbiome
CABI Reviews
2024
Archaeology meets environmental genomics: implementing sedaDNA in the study of the human past
Archaeological and Anthropological Sciences
2024
Coprolite diversity from the archeological site Gruta Do Gentio Ll, Unaí, Minas Gerais, Brazil
The Holocene
2024
Working Ethically with Ancient DNA from Composites in the United States
Advances in Archaeological Practice
2023
Préhistoire. Nouvelles frontières
2023
Handbook of Archaeological Sciences
2023
Edible flora in pre-Columbian Caribbean coprolites: Expected and unexpected data
PLOS ONE
2023
Handbook of Archaeological Sciences
2023
Metagenomic Insight into The Global Dissemination of The Antibiotic Resistome
Advanced Science
2023
An integral approach to the study of bromalites. Late Quaternary and neo-taphonomic case studies from arid South America
Quaternary Science Advances
2023
Archaeological Evidence for the Dietary Practices and Lifestyle of 18th Century Lisbon, Portugal—Combined Steroidal Biomarker and Microparticle Analysis of the Carbonized Faecal Remains
Separations
2023
Sequential biomolecular, macrofossil, and microfossil extraction from coprolites for reconstructing past behavior and environments
Frontiers in Ecology and Evolution
2023
The New Zealand bracken fern rhizome, Pteridium esculentum (G.Forst): a toxic food plant of pre‐European Māori
Archaeology in Oceania
2023
Extension of the Segatella copri complex to 13 species with distinct large extrachromosomal elements and associations with host conditions
Cell Host & Microbe
2022
Geographically diverse canid sampling provides novel insights into pre-industrial microbiomes
Proceedings of the Royal Society B: Biological Sciences
2022
Helminth Infections and their Impact on Global Public Health
2022
The Technological Advance and Application of Coprolite Analysis
Frontiers in Ecology and Evolution
2022
An Archaeology of Microbes
Journal of Anthropological Research
2021
Different Human–Dog Interactions in Early Agricultural Societies of China, Revealed by Coprolite
Frontiers in Earth Science
2021
Archiving time series sewage samples as biological records of built environments
BMC Infectious Diseases
2021
Coprolite research: archaeological and paleoenvironmental potentials
Archaeological and Anthropological Sciences
2021
Reconstruction of ancient microbial genomes from the human gut
Nature
2021
The gut microbiome buffers dietary adaptation in Bronze Age domesticated dogs
iScience
2021
Reproducible, portable, and efficient ancient genome reconstruction with nf-core/eager
PeerJ
2021
Analysis of global human gut metagenomes shows that metabolic resilience potential for short-chain fatty acid production is strongly influenced by lifestyle
Scientific Reports
2021
PyDamage: automated ancient damage identification and estimation for contigs in ancient DNA de novo assembly
PeerJ
2021
Ancient Metagenomic Studies: Considerations for the Wider Scientific Community
mSystems
2021
Paleomicrobiology of the human digestive tract: A review
Microbial Pathogenesis
2021
Ancient DNA analysis
Nature Reviews Methods Primers
2021
Hallstatt miners consumed blue cheese and beer during the Iron Age and retained a non-Westernized gut microbiome until the Baroque period
Current Biology
2020
Functional diversity of microbial ecologies estimated from ancient human coprolites and dental calculus
Philosophical Transactions of the Royal Society B: Biological Sciences
2020
The what, how and why of archaeological coprolite analysis
Earth-Science Reviews
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