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2025
Targeted Intervention Strategies for Maternal–Offspring Transmission of Christensenellaceae in Pigs via a Deep Learning Model
Advanced Science
2025
Vertical exchange versus horizontal dispersal in structuring local planktonic and sedimentary bacterial communities in polluted lotic ecosystems
Journal of Environmental Sciences
2025
Dietary microbiota-mediated shifts in gut microbial ecology and pathogen interactions in giant pandas (Ailuropoda melanoleuca)
Communications Biology
2025
Bioinformatic approaches to blood and tissue microbiome analyses: challenges and perspectives
Briefings in Bioinformatics
2025
SourceApp: A Novel Metagenomic Source Tracking Tool that can Distinguish between Fecal Microbiomes Using Genome-To-Source Associations Benchmarked Against Mixed Input Spike-In Mesocosms
Environmental Science & Technology
2025
Bone Adhered Sediments as a Source of Target and Environmental DNA and Proteins
Molecular Biology and Evolution
2025
Community dynamics during de novo colonization of the nascent peri-implant sulcus
International Journal of Oral Science
2025
Advantages of Next‐Generation Technologies in Comparison to Standard and Commonly Used Methods in the Identification of Colonized Bacteria in the Herniated Lumbar Disc
Cellular Microbiology
2025
A Practical Framework for Environmental Antibiotic Resistance Monitoring in Freshwater Ecosystems
Antibiotics
2025
Ancient microbial DNA and proteins preserve in concretions covering human remains
iScience
2025
Novel Microbial Engraftment Trajectories Following Microbiota Transplant Therapy in Ulcerative Colitis
Journal of Crohn's and Colitis
2025
Traditional Medicines and Natural Products as Preventive and Therapeutic Agents Against COVID-19
2025
Air microbiomes reveal presence of Shiga toxin-producing Escherichia coli in airborne cattle pen soil adjacent to large feedlot
Science of The Total Environment
2024
Atmospheric dispersal shapes rapid bacterial colonization of Icelandic Lava Rocks
FEMS Microbes
2024
Current status of microbial source tracking applications in constructed wetlands serving as nature-based solutions for water management and wastewater treatment
Environmental Pollution
2024
Invasive plant species interact with drought to shift key functions and families in the native rhizosphere
Plant and Soil
2024
Tracing early pastoralism in Central Europe using sedimentary ancient DNA
Current Biology
2024
Origin of the neonatal gut microbiota and probiotic intervention: a randomized controlled trial
Frontiers in Nutrition
2024
Innovative omics strategies in fermented fruits and vegetables: Unveiling nutritional profiles, microbial diversity, and future prospects
Comprehensive Reviews in Food Science and Food Safety
2024
Using Machine Learning and Natural Language Processing for Unveiling Similarities between Microbial Data
Mathematics
2024
Metatranscriptomic characterization of six types of forensic samples and its potential application to body fluid/tissue identification: A pilot study
Forensic Science International: Genetics
2024
Metagenomic analysis of microbial communities and antibiotic resistant genes in the Tijuana river, and potential sources
Environmental Pollution
2024
Advancing Source Tracking: Systematic Review and Source-Specific Genome Database Curation of Fecally Shed Prokaryotes
Environmental Science & Technology Letters
2024
Associations between wastewater gut microbiome and community obesity rates: Potential microbial biomarkers for surveillance
Soil & Environmental Health
2023
Genetic hypogonadal mouse model reveals niche-specific influence of reproductive axis and sex on intestinal microbial communities
Biology of Sex Differences
2023
Oceans and Human Health
2023
Holistic View and Novel Perspective on Ruminal and Extra-Gastrointestinal Methanogens in Cattle
Microorganisms
2023
Novel Clustering Methods Identified Three Caries Status-Related Clusters Based on Oral Microbiome in Thai Mother–Child Dyads
Genes
2023
The Skin Microbiome: Current Techniques, Challenges, and Future Directions
Microorganisms
2023
Distribution characteristics of oral microbiota and its relationship with intestinal microbiota in patients with type 2 diabetes mellitus
Frontiers in Endocrinology
2023
SNV-FEAST: microbial source tracking with single nucleotide variants
Genome Biology
2023
Benchmarking Metagenomic Classifiers on Simulated Ancient and Modern Metagenomic Data
Microorganisms
2023
decOM: similarity-based microbial source tracking of ancient oral samples using k-mer-based methods
Microbiome
2023
Current concepts, advances, and challenges in deciphering the human microbiota with metatranscriptomics
Trends in Genetics
2023
A Comprehensive Review for the Surveillance of Human Pathogenic Microorganisms in Shellfish
Microorganisms
2023
Edible flora in pre-Columbian Caribbean coprolites: Expected and unexpected data
PLOS ONE
2023
Maternal Rumen Bacteriota Shapes the Offspring Rumen Bacteriota, Affecting the Development of Young Ruminants
Microbiology Spectrum
2022
Ontology-aware deep learning enables ultrafast and interpretable source tracking among sub-million microbial community samples from hundreds of niches
Genome Medicine
2022
An Archaeology of Microbes
Journal of Anthropological Research
2022
Metagenomic Analysis of Microbial Contamination in the U.S. Portion of the Tijuana River Watershed
International Journal of Environmental Research and Public Health
2022
Relationships Between Diurnal Changes of Tongue Coating Microbiota and Intestinal Microbiota
Frontiers in Cellular and Infection Microbiology
2022
Bacterial communities in co-cultured fish intestines and rice field soil irrigated with aquaculture wastewater
AMB Express
2022
Tracking the source of antibiotic-resistant Escherichia coli in the aquatic environment in Shiga, Japan, through whole-genome sequencing
Environmental Advances
2022
Toward shotgun metagenomic approaches for microbial source tracking sewage spills based on laboratory mesocosms
Water Research
2022
Genomic ancestry, diet and microbiomes of Upper Palaeolithic hunter-gatherers from San Teodoro cave
Communications Biology
2022
Towards standardized and reproducible research in skin microbiomes
Environmental Microbiology
2022
Tracking bacterial pollution at a marine wastewater outfall site – A case study from Norway
Science of The Total Environment
2022
Strain-resolved analysis in a randomized trial of antibiotic pretreatment and maintenance dose delivery mode with fecal microbiota transplant for ulcerative colitis
Scientific Reports
2022
Species-Resolved Metagenomics of Kindergarten Microbiomes Reveal Microbial Admixture Within Sites and Potential Microbial Hazards
Frontiers in Microbiology
2021
Tracking Bacterial Pollution at a Marine Wastewater Outfall Site – a Case Study from Norway
SSRN Electronic Journal
2021
Metagenome-Wide Analysis of Rural and Urban Surface Waters and Sediments in Bangladesh Identifies Human Waste as a Driver of Antibiotic Resistance
mSystems
2021
Utilizing Metagenomic Data and Bioinformatic Tools for Elucidating Antibiotic Resistance Genes in Environment
Frontiers in Environmental Science
2021
Microbial source tracking using metagenomics and other new technologies
Journal of Microbiology
2021
Statistical and Machine Learning Techniques in Human Microbiome Studies: Contemporary Challenges and Solutions
Frontiers in Microbiology
2020
Analysis on herbal medicines utilized for treatment of COVID-19
Acta Pharmaceutica Sinica B
2020
Sequence-enabled community-based microbial source tracking in surface waters using machine learning classification: A review
Journal of Microbiological Methods
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