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Javier Rodríguez, Paula R. Suárez, Jorge R. Álvarez-Buylla, Lucía Vázquez, Héctor González-Iglesias, Baltasar Mayo, Ana Belén Flórez

Xuangao Wu, Ting Zhang, Jian Feng, Sunmin Park

Shengyi Han, Kaicen Wang, Kunkai Su, Xiangmin Dong, Yilun Huang, Yanmeng Lu, Shuobo Zhang, Bo Qiu, Yating Li, Hang Xiao, David McClements, Björn Berglund, Mingfei Yao, Lanjuan Li

Guopeng Lin, Bo Zhang, Zhihao Qu, Min Guo, Kexin Shang, Jianxin Zhao, Haitao Li, Gang Wang

Petr Kralik, Marta Duskova, Martin Klanica, Radka Dziedzinska

Yi Wang, Yuejie Hou, Lin Yang, Shisen Li, Weiting Tang, Hui Tang, Qiushun He, Siyuan Lin, Yanyan Zhang, Xingyu Li, Shiwen Chen, Yusheng Huang, Lingsong Kong, Huijun Zhang, Duncan Yu, Feng Mu, Huanming Yang, Jian Wang, Nattiya Hirankarn, Meng Yang

Joshua Hayes, Seung Soo Lee, Jason Carnevale, Daniel Shamir, Marc Bohbot, Andrew G. Kirk, Miltiadis Paliouras, Mark A. Trifiro

Palni Kundra, Annelies Geirnaert, Benoit Pugin, Serafina Plüss, Susanna Kariluoto, Christophe Lacroix, Anna Greppi

Xuangao Wu, Ting Zhang, TianShun Zhang, Sunmin Park

Hans Ghezzi, Yiyun M. Fan, Katharine M. Ng, Juan C. Burckhardt, Deanna M. Pepin, Xuan Lin, Ryan M. Ziels, Carolina Tropini

Lizandra Perez-Bou, Alejandro Gonzalez-Martinez, Juan J. Cabrera, Belen Juarez-Jimenez, Belen Rodelas, Jesus Gonzalez-Lopez, David Correa-Galeote

Vitaliy Strochkov, Rano Sattarova, Karlygash Boranbayeva, Flyura Bakiyeva, Kuandyk Shynybayev, Batyrbek Aitzhanov, Markhabat Kassenov

Yoon-Jung Choi, Shukho Kim, Jungmin Kim

S. Turco, M.I. Drais, R. De Vivo, V. Cristofori, A. Mazzaglia

Carlos M. Ardila, Gustavo A. Jiménez-Arbeláez, Annie Marcela Vivares-Builes

Cleudison Gabriel Nascimento Da Silva, Edevaldo de Castro Monteiro, Priscila Pereira Diniz, Leonardo Araujo Terra, Stefan Schwab, Veronica Massena Reis, Jean Luiz Simoes-Araujo, Segundo Urquiaga

Garima Gupta, Sangeeta Paul, Sachidanand Singh, Giacomo Pietramellara, Shamina Imran Pathan, Subhan Danish, Dilfuza Jabborova, Rahul Datta, Prabhat Nath Jha

Lorenz Timo Ryser, Emmanuelle Arias-Roth, Hélène Berthoud, Céline Delbès-Paus, Christophe Chassard, Rémy Bruggmann, Stefan Irmler

Matthias Dreier, Marco Meola, Hélène Berthoud, Noam Shani, Daniel Wechsler, Pilar Junier

Noam Shani, Simone Oberhaensli, Emmanuelle Arias-Roth

Matthias Dreier, Hélène Berthoud, Noam Shani, Daniel Wechsler, Pilar Junier

Noam Shani, Simone Oberhaensli, Hélène Berthoud, Remo S. Schmidt, Hans-Peter Bachmann

2026	Strain-level contribution of three lactic acid bacteria to consortium stability and milk fermentation assessed by untargeted metabolomics and volatile compound analysis Food Bioscience Javier Rodríguez, Paula R. Suárez, Jorge R. Álvarez-Buylla, Lucía Vázquez, Héctor González-Iglesias, Baltasar Mayo, Ana Belén Flórez
2026	Herba Patriniae with probiotics targets Escherichia fergusonii and the 5-hydroxytryptophan–trimethylamine N-oxide axis in Parkinson’s disease Phytomedicine Xuangao Wu, Ting Zhang, Jian Feng, Sunmin Park
2025	Improved adhesion and function of Pediococcus pentosaceus Li05 for acute colitis through surface modification npj Science of Food Shengyi Han, Kaicen Wang, Kunkai Su, Xiangmin Dong, Yilun Huang, Yanmeng Lu, Shuobo Zhang, Bo Qiu, Yating Li, Hang Xiao, David McClements, Björn Berglund, Mingfei Yao, Lanjuan Li
2025	Galactooligosaccharide-Metabolism-Related Genes of Bifidobacterium pseudocatenulatum Contribute to the Regulation of Glucose and Lipid Metabolism in Type 2 Diabetic Mice Journal of Agricultural and Food Chemistry Guopeng Lin, Bo Zhang, Zhihao Qu, Min Guo, Kexin Shang, Jianxin Zhao, Haitao Li, Gang Wang
2025	Novel and simple qPCR system for the detection and quantification of the probiotic bacteria in food supplements Journal of Food Measurement and Characterization Petr Kralik, Marta Duskova, Martin Klanica, Radka Dziedzinska
2025	Methods in Microbiology Belma Nural Yaman
2025	Accelerating primer design for amplicon sequencing using large language model-powered agents Nature Biomedical Engineering Yi Wang, Yuejie Hou, Lin Yang, Shisen Li, Weiting Tang, Hui Tang, Qiushun He, Siyuan Lin, Yanyan Zhang, Xingyu Li, Shiwen Chen, Yusheng Huang, Lingsong Kong, Huijun Zhang, Duncan Yu, Feng Mu, Huanming Yang, Jian Wang, Nattiya Hirankarn, Meng Yang
2025	Performance and functional assessment of the Kimera P-IV point-of-care plasmonic qPCR prototype for ultra rapid pathogen detection of chlamydia trachomatis Epidemiology and Infection Joshua Hayes, Seung Soo Lee, Jason Carnevale, Daniel Shamir, Marc Bohbot, Andrew G. Kirk, Miltiadis Paliouras, Mark A. Trifiro
2024	Microbially-produced folate forms support the growth of Roseburia intestinalis but not its competitive fitness in fecal batch fermentations BMC Microbiology Palni Kundra, Annelies Geirnaert, Benoit Pugin, Serafina Plüss, Susanna Kariluoto, Christophe Lacroix, Anna Greppi
2024	The impact of gut microbiome enterotypes on ulcerative colitis: identifying key bacterial species and revealing species co-occurrence networks using machine learning Gut Microbes Xuangao Wu, Ting Zhang, TianShun Zhang, Sunmin Park
2024	PUPpy: a primer design pipeline for substrain-level microbial detection and absolute quantification mSphere Hans Ghezzi, Yiyun M. Fan, Katharine M. Ng, Juan C. Burckhardt, Deanna M. Pepin, Xuan Lin, Ryan M. Ziels, Carolina Tropini
2024	Design and Validation of Primer Sets for the Detection and Quantification of Antibiotic Resistance Genes in Environmental Samples by Quantitative PCR Microbial Ecology Lizandra Perez-Bou, Alejandro Gonzalez-Martinez, Juan J. Cabrera, Belen Juarez-Jimenez, Belen Rodelas, Jesus Gonzalez-Lopez, David Correa-Galeote
2023	Development and evaluation of a multiplex polymerase chain reaction in real-time for differential diagnosis of Moraxella-induced keratoconjunctivitis in livestock Veterinary World Vitaliy Strochkov, Rano Sattarova, Karlygash Boranbayeva, Flyura Bakiyeva, Kuandyk Shynybayev, Batyrbek Aitzhanov, Markhabat Kassenov
2023	Development of a Magnetic Bead-Based Method for Specific Detection of Enterococcus faecalis Using C-Terminal Domain of ECP3 Phage Endolysin Journal of Microbiology and Biotechnology Yoon-Jung Choi, Shukho Kim, Jungmin Kim
2023	Development of a quantitative qPCR assay for the detection of Pseudomonas avellanae in hazelnut tissues Acta Horticulturae S. Turco, M.I. Drais, R. De Vivo, V. Cristofori, A. Mazzaglia
2023	The Potential Clinical Applications of a Microfluidic Lab-on-a-Chip for the Identification and Antibiotic Susceptibility Testing of Enterococcus faecalis-Associated Endodontic Infections: A Systematic Review Dentistry Journal Carlos M. Ardila, Gustavo A. Jiménez-Arbeláez, Annie Marcela Vivares-Builes
2023	Designing and validation of specific primers for the quantitative detection of bacteria in sugarcane inoculant Brazilian Journal of Microbiology Cleudison Gabriel Nascimento Da Silva, Edevaldo de Castro Monteiro, Priscila Pereira Diniz, Leonardo Araujo Terra, Stefan Schwab, Veronica Massena Reis, Jean Luiz Simoes-Araujo, Segundo Urquiaga
2022	Exploring Functional Diversity and Community Structure of Diazotrophic Endophytic Bacteria Associated with Pennisetum glaucum Growing under Field in a Semi-Arid Region Land Garima Gupta, Sangeeta Paul, Sachidanand Singh, Giacomo Pietramellara, Shamina Imran Pathan, Subhan Danish, Dilfuza Jabborova, Rahul Datta, Prabhat Nath Jha
2022	Cadaverine, putrescine, and histamine formation of Morganella morganii in raclette-type cheese International Dairy Journal Lorenz Timo Ryser, Emmanuelle Arias-Roth, Hélène Berthoud, Céline Delbès-Paus, Christophe Chassard, Rémy Bruggmann, Stefan Irmler
2022	High-throughput qPCR and 16S rRNA gene amplicon sequencing as complementary methods for the investigation of the cheese microbiota BMC Microbiology Matthias Dreier, Marco Meola, Hélène Berthoud, Noam Shani, Daniel Wechsler, Pilar Junier
2021	Antibiotic Susceptibility Profiles of Pediococcus pentosaceus from Various Origins and Their Implications for the Safety Assessment of Strains with Food-Technology Applications Journal of Food Protection Noam Shani, Simone Oberhaensli, Emmanuelle Arias-Roth
2021	Development of a High-Throughput Microfluidic qPCR System for the Quantitative Determination of Quality-Relevant Bacteria in Cheese Frontiers in Microbiology Matthias Dreier, Hélène Berthoud, Noam Shani, Daniel Wechsler, Pilar Junier
2021	Antimicrobial Susceptibility of Lactobacillus delbrueckii subsp. lactis from Milk Products and Other Habitats Foods Noam Shani, Simone Oberhaensli, Hélène Berthoud, Remo S. Schmidt, Hans-Peter Bachmann
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