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2025	In Silico Identification of Banana High-Confidence MicroRNA Binding Sites Targeting Banana Streak GF Virus Applied Microbiology Muhammad Aleem Ashraf, Babar Ali, Maryam Fareed, Ahsan Sardar, Eisha Saeed, Samaa Islam, Shaher Bano, Naitong Yu
2025	Interdisciplinary Biotechnological Advances Sandeep Kour, Deepak Kumar, Mohd. Ali, Parkirti, Roohi Sharma, Vikram, Rajesh Kumari Manhas, Harish Changotra, Puja Ohri
2025	An Integrative Computational Approach for Identifying Cotton Host Plant MicroRNAs with Potential to Abate CLCuKoV-Bur Infection Viruses Muhammad Aleem Ashraf, Imran Shahid, Judith K. Brown, Naitong Yu
2025	Revolutionizing Sugarcane Molecular Breeding and Biotechnological Approaches Garima Aggarwal, A. S. Jeena, Babita Bhatt, Rubina Khan, Divya Chaudhary, Dalip, Kamal Priyananda Wickramasinghe
2024	In Silico Identification of Sugarcane Genome-Encoded MicroRNAs Targeting Sugarcane Mosaic Virus Microbiology Research Wang Wenzhi, Muhammad Aleem Ashraf, Hira Ghaffar, Zainab Ijaz, Waqar ul Zaman, Huda Mazhar, Maryam Zulfqar, Shuzhen Zhang
2024	Comparative genome-wide characterization of salt responsive micro RNA and their targets through integrated small RNA and de novo transcriptome profiling in sugarcane and its wild relative Erianthus arundinaceus 3 Biotech Palanisamy Vignesh, Channappa Mahadevaiah, Kannan Selvamuthu, Huskur Kumaraswamy Mahadeva Swamy, Venkatarayappa Sreenivasa, Chinnaswamy Appunu
2023	Genome-Wide Identification of Cotton MicroRNAs Predicted for Targeting Cotton Leaf Curl Kokhran Virus-Lucknow Microbiology Research Muhammad Aleem Ashraf, Judith K. Brown, Muhammad Shahzad Iqbal, Naitong Yu
2023	In Silico Identification of Cassava Genome-Encoded MicroRNAs with Predicted Potential for Targeting the ICMV-Kerala Begomoviral Pathogen of Cassava Viruses Muhammad Aleem Ashraf, Babar Ali, Judith K. Brown, Imran Shahid, Naitong Yu
2023	In Silico Apple Genome-Encoded MicroRNA Target Binding Sites Targeting Apple Chlorotic Leaf Spot Virus Horticulturae Muhammad Aleem Ashraf, Nimra Murtaza, Judith K. Brown, Naitong Yu
2023	In silico identification and validation of microRNAs from the genome of Solanum lycopersicum targeting Groundnut bud necrosis orthotospovirus Physiological and Molecular Plant Pathology M. Nivedha, S. Harish, K. Angappan, G. Karthikeyan, K.K. Kumar, M. Murugan, M. Jayakanthan
2022	Computational Biology and Machine Learning Approaches Identify Rubber Tree (Hevea brasiliensis Muell. Arg.) Genome Encoded MicroRNAs Targeting Rubber Tree Virus 1 Applied Sciences Muhammad Aleem Ashraf, Hafiza Kashaf Tariq, Xiao-Wen Hu, Jallat Khan, Zhi Zou
2022	In silico identification of sugarcane (Saccharum officinarum L.) genome encoded microRNAs targeting sugarcane bacilliform virus PLOS ONE Muhammad Aleem Ashraf, Xiaoyan Feng, Xiaowen Hu, Fakiha Ashraf, Linbo Shen, Muhammad Shahzad Iqbal, Shuzhen Zhang
2022	Transcriptional and post-transcriptional regulation of RNAi-related gene expression during plant-virus interactions Stress Biology Qian Gong, Yunjing Wang, Zhenhui Jin, Yiguo Hong, Yule Liu
2022	Prediction of Site Directed miRNAs as Key Players of Transcriptional Regulators Against Influenza C Virus Infection Through Computational Approaches Frontiers in Molecular Biosciences Mubashir Hassan, Muhammad Shahzad Iqbal, Sawaira Naqvi, Hany Alashwal, Ahmed A. Moustafa, Andrzej Kloczkowski
2021	Potential targets for evaluation of sugarcane yellow leaf virus resistance in sugarcane cultivars: in silico sugarcane miRNA and target network prediction Biotechnology & Biotechnological Equipment Muhammad Aleem Ashraf, Fakiha Ashraf, Xiaoyan Feng, Xiaowen Hu, Linbo Shen, Jallat Khan, Shuzhen Zhang
2021	The role of miRNA in plant–virus interaction: a review Molecular Biology Reports Anteneh Ademe Mengistu, Tesfaye Alemu Tenkegna
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