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2025	Manipulating alternative end-joining alters carbon-ion beam-induced genome mutation profiles in Arabidopsis thaliana DNA Research Jing Long, Jian Zhao, Jingmin Chen, Jianing Ding, Xiao Liu, Zhe Li, Po Bian, Ting Wang, Wenjie Jin, Xihong Lu, Yifan Zhang, Libin Zhou, Yan Du
2025	Structural Variants: Mechanisms, Mapping, and Interpretation in Human Genetics Genes Shruti Pande, Moez Dawood, Christopher M. Grochowski
2025	The prevalence of pathogenic variants in the BMPR2 gene in patients with the idiopathic pulmonary arterial hypertension in the Russian population: sequencing data and meta-analysis Respiratory Research Galina Okhrimenko, Irina Borovikova, Elena Dankovtseva, Vladimir Zamyatin, Dmitry Nikulin, Ekaterina Zobova, Anna Lyzhenkova, Anna Danilova, Natalia Osipova, Larisa Minushkina, Dmitry Zateyshchikov, Maria Poptsova
2024	Implications of the three-dimensional chromatin organization for genome evolution in a fungal plant pathogen Nature Communications David E. Torres, H. Martin Kramer, Vittorio Tracanna, Gabriel L. Fiorin, David E. Cook, Michael F. Seidl, Bart P. H. J. Thomma
2023	Transcriptomic and genomic effects of gamma-radiation exposure on strains of the black yeast Exophiala dermatitidis evolved to display increased ionizing radiation resistance Microbiology Spectrum Jennifer D. Yuzon, Zachary Schultzhaus, Zheng Wang
2023	Model Organism Modifier (MOM): a user-friendly Galaxy workflow to detect modifiers from genome sequencing data using Caenorhabditis elegans G3: Genes, Genomes, Genetics Tatiana Maroilley, K M Tahsin Hassan Rahit, Afiya Razia Chida, Filip Cotra, Victoria Rodrigues Alves Barbosa, Maja Tarailo-Graovac
2023	MSV: a modular structural variant caller that reveals nested and complex rearrangements by unifying breakends inferred directly from reads Genome Biology Markus Schmidt, Arne Kutzner
2022	Viola: a structural variant signature extractor with user-defined classifications Bioinformatics Itsuki Sugita, Shohei Matsuyama, Hiroki Dobashi, Daisuke Komura, Shumpei Ishikawa
2022	Overview of structural variation calling: Simulation, identification, and visualization Computers in Biology and Medicine Yu Lei, Yue Meng, Xinqi Guo, Ke Ning, Yixin Bian, Lanlan Li, Zhenduo Hu, Anastasia A. Anashkina, Qinghua Jiang, Yucui Dong, Xiao Zhu
2022	Neuromethods Ricardo A. Vialle, Towfique Raj
2021	Ivory poaching and the rapid evolution of tusklessness in African elephants Science Shane C. Campbell-Staton, Brian J. Arnold, Dominique Gonçalves, Petter Granli, Joyce Poole, Ryan A. Long, Robert M. Pringle
2021	Comprehensive characterization of copy number variation (CNV) called from array, long- and short-read data BMC Genomics Ksenia Lavrichenko, Stefan Johansson, Inge Jonassen
2021	Transposable Elements Contribute to Genome Dynamics and Gene Expression Variation in the Fungal Plant PathogenVerticillium dahliae Genome Biology and Evolution David E Torres, Bart P H J Thomma, Michael F Seidl
2020	Towards a better understanding of the low recall of insertion variants with short-read based variant callers BMC Genomics Wesley J. Delage, Julien Thevenon, Claire Lemaitre
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