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Doğa Eskier, Seray Yetkin, Nazmiye Arslan, Gökhan Karakülah, Hani Alotaibi

Chao Wang, Bowen Lei, Yongzhou Bao, Zhen Wang, Choulin Chen, Yuanyuan Zhang, Shenghua Qin, Tao Sun, Zhonglin Tang, Yuwen Liu

Yongqing Qian, Zuwen Zhou, Tianmin Ouyang, Dongao Li, Ru Li, Ping Gan, Renfei Qiao, Yingying Tan, Mingchao Qian, Liezhao Liu, Jiana Li, Kun Lu, Jijing Luo, Ling-Ling Chen, Jia-Ming Song

Yao-Chung Chen, Arnaud Maupas, Katja Nowick

Pengju Zhao, Chen Peng, Lingzhao Fang, Zhengguang Wang, George E. Liu

Doğa Eskier, Alirıza Arıbaş, Gökhan Karakülah

Adrian F. Powell, Ari Feder, Jie Li, Maximilian H.‐W. Schmidt, Lance Courtney, Saleh Alseekh, Emma M. Jobson, Alexander Vogel, Yimin Xu, David Lyon, Kathryn Dumschott, Marcus McHale, Ronan Sulpice, Kan Bao, Rohit Lal, Asha Duhan, Asis Hallab, Alisandra K. Denton, Marie E. Bolger, Alisdair R. Fernie, Sarah R. Hind, Lukas A. Mueller, Gregory B. Martin, Zhangjun Fei, Cathie Martin, James J. Giovannoni, Susan R. Strickler, Björn Usadel

Rocío Rodríguez-Quiroz, Braulio Valdebenito-Maturana

Cihangir Yandım, Gökhan Karakülah

Braulio Valdebenito-Maturana, Matias Ignacio Rojas-Tapia, Mónica Carrasco, Juan Carlos Tapia

Mahboubeh R. Rostami, Martina Bradic

Peter A. Stockwell, Chiemi F. Lynch‐Sutherland, Aniruddha Chatterjee, Erin C. Macaulay, Michael R. Eccles

Lucy L. Xu, Miao Qi, Fred Y. Ye

Yilan Wang, Boxun Zhao, Jaejoon Choi, Eunjung Alice Lee

Braulio Valdebenito-Maturana, Francisca Torres, Mónica Carrasco, Juan Carlos Tapia

Ke Zhu, Cong Pian, Qiong Xiang, Xin Liu, Yuanyuan Chen

Sophie Lanciano, Gael Cristofari

Xiuming Zhai, Zhaowei Yang, Xiji Liu, Zihe Dong, Dandan Zhou

Mingqian Hao, Wencong Liu, Chuanbo Ding, Xiaojuan Peng, Yue Zhang, Huiying Chen, Ling Dong, Xinglong Liu, Yingchun Zhao, Xueyan Chen, Sadia Khatoon, Yinan Zheng

2025	Exploring Regulatory Roles of Transposable Elements in EMT and MET through Data-Driven Analysis: Insights from regulaTER Journal of Molecular Biology Doğa Eskier, Seray Yetkin, Nazmiye Arslan, Gökhan Karakülah, Hani Alotaibi
2025	Multi-omics analysis reveals critical cis-regulatory roles of transposable elements in livestock genomes iScience Chao Wang, Bowen Lei, Yongzhou Bao, Zhen Wang, Choulin Chen, Yuanyuan Zhang, Shenghua Qin, Tao Sun, Zhonglin Tang, Yuwen Liu
2025	Pangenome analysis of transposable element insertion polymorphisms reveals features underlying cold tolerance in rice Nature Communications Yongqing Qian, Zuwen Zhou, Tianmin Ouyang, Dongao Li, Ru Li, Ping Gan, Renfei Qiao, Yingying Tan, Mingchao Qian, Liezhao Liu, Jiana Li, Kun Lu, Jijing Luo, Ling-Ling Chen, Jia-Ming Song
2025	Regulatory networks of KRAB zinc finger genes and transposable elements changed during human brain evolution and disease eLife Yao-Chung Chen, Arnaud Maupas, Katja Nowick
2023	Taming transposable elements in livestock and poultry: a review of their roles and applications Genetics Selection Evolution Pengju Zhao, Chen Peng, Lingzhao Fang, Zhengguang Wang, George E. Liu
2023	Methods in Molecular Biology Doğa Eskier, Alirıza Arıbaş, Gökhan Karakülah
2022	A Solanum lycopersicoides reference genome facilitates insights into tomato specialized metabolism and immunity The Plant Journal Adrian F. Powell, Ari Feder, Jie Li, Maximilian H.‐W. Schmidt, Lance Courtney, Saleh Alseekh, Emma M. Jobson, Alexander Vogel, Yimin Xu, David Lyon, Kathryn Dumschott, Marcus McHale, Ronan Sulpice, Kan Bao, Rohit Lal, Asha Duhan, Asis Hallab, Alisandra K. Denton, Marie E. Bolger, Alisdair R. Fernie, Sarah R. Hind, Lukas A. Mueller, Gregory B. Martin, Zhangjun Fei, Cathie Martin, James J. Giovannoni, Susan R. Strickler, Björn Usadel
2022	Recent Bioinformatic Progress to Identify Epigenetic Changes Associated to Transposable Elements Frontiers in Genetics Emmanuelle Lerat
2022	SoloTE for improved analysis of transposable elements in single-cell RNA-Seq data using locus-specific expression Communications Biology Rocío Rodríguez-Quiroz, Braulio Valdebenito-Maturana
2022	Repeat expression is linked to patient survival and exhibits single nucleotide variation in pancreatic cancer revealing LTR70:r.879A>G Gene Cihangir Yandım, Gökhan Karakülah
2022	Dysregulated Expression of Transposable Elements in TDP-43M337V Human Motor Neurons That Recapitulate Amyotrophic Lateral Sclerosis In Vitro International Journal of Molecular Sciences Braulio Valdebenito-Maturana, Matias Ignacio Rojas-Tapia, Mónica Carrasco, Juan Carlos Tapia
2021	The derepression of transposable elements in lung cells is associated with the inflammatory response and gene activation in idiopathic pulmonary fibrosis Mobile DNA Mahboubeh R. Rostami, Martina Bradic
2021	RepExpress: A Novel Pipeline for the Quantification and Characterization of Transposable Element Expression from RNA‐seq Data Current Protocols Peter A. Stockwell, Chiemi F. Lynch‐Sutherland, Aniruddha Chatterjee, Erin C. Macaulay, Michael R. Eccles
2021	Identifying Scientific and Technical “Unicorns” Journal of Data and Information Science Lucy L. Xu, Miao Qi, Fred Y. Ye
2021	Genomic approaches to trace the history of human brain evolution with an emerging opportunity for transposon profiling of ancient humans Mobile DNA Yilan Wang, Boxun Zhao, Jaejoon Choi, Eunjung Alice Lee
2021	Differential regulation of transposable elements (TEs) during the murine submandibular gland development Mobile DNA Braulio Valdebenito-Maturana, Francisca Torres, Mónica Carrasco, Juan Carlos Tapia
2020	Personalized analysis of breast cancer using sample-specific networks PeerJ Ke Zhu, Cong Pian, Qiong Xiang, Xin Liu, Yuanyuan Chen
2020	Measuring and interpreting transposable element expression Nature Reviews Genetics Sophie Lanciano, Gael Cristofari
2020	Identification of NUF2 and FAM83D as potential biomarkers in triple-negative breast cancer PeerJ Xiuming Zhai, Zhaowei Yang, Xiji Liu, Zihe Dong, Dandan Zhou
2020	Identification of hub genes and small molecule therapeutic drugs related to breast cancer with comprehensive bioinformatics analysis PeerJ Mingqian Hao, Wencong Liu, Chuanbo Ding, Xiaojuan Peng, Yue Zhang, Huiying Chen, Ling Dong, Xinglong Liu, Yingchun Zhao, Xueyan Chen, Sadia Khatoon, Yinan Zheng
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