Here is a new study by Carl Yeoman et al. appeared in @thePeerJ today:
https://t.co/98H2X6q9HA
It uses #anvio to combine genome-resolved metagenomics, pangenomics, and phylogenomics (reproducible workflow: https://t.co/P75qW2M4uv), and to interactively visualize it all at once: https://t.co/rRJ4So0GHg