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2025	Biopanning Data Bank 2023: Updating and New Findings Current Bioinformatics Hamza B. Abagna, Bowen Li, Chunchao Pu, Yuqing Jiang, Yuwei Zhou, Bifang He, Jian Huang
2025	A comparative analysis of sequence composition in different lots of a phage display peptide library during amplification Virology Journal Anders Wilgaard Sinkjaer, Ane Beth Sloth, Amanda Oester Andersen, Malte Jensen, Babak Bakhshinejad, Andreas Kjaer
2024	Predicting Antidiabetic Peptide Activity: A Machine Learning Perspective on Type 1 and Type 2 Diabetes International Journal of Molecular Sciences Kaida Cai, Zhe Zhang, Wenzhou Zhu, Xiangwei Liu, Tingqing Yu, Wang Liao
2023	AB-Amy: machine learning aided amyloidogenic risk prediction of therapeutic antibody light chains Antibody Therapeutics Yuwei Zhou, Ziru Huang, Yushu Gou, Siqi Liu, Wei Yang, Hongyu Zhang, Anthony Mackitz Dzisoo, Jian Huang
2022	BBPpredict: A Web Service for Identifying Blood-Brain Barrier Penetrating Peptides Frontiers in Genetics Xue Chen, Qianyue Zhang, Bowen Li, Chunying Lu, Shanshan Yang, Jinjin Long, Bifang He, Heng Chen, Jian Huang
2022	SSH2.0: A Better Tool for Predicting the Hydrophobic Interaction Risk of Monoclonal Antibody Frontiers in Genetics Yuwei Zhou, Shiyang Xie, Yue Yang, Lixu Jiang, Siqi Liu, Wei Li, Hamza Bukari Abagna, Lin Ning, Jian Huang
2022	AntiDMPpred: a web service for identifying anti-diabetic peptides PeerJ Xue Chen, Jian Huang, Bifang He
2022	PDL1Binder: Identifying programmed cell death ligand 1 binding peptides by incorporating next-generation phage display data and different peptide descriptors Frontiers in Microbiology Bifang He, Bowen Li, Xue Chen, Qianyue Zhang, Chunying Lu, Shanshan Yang, Jinjin Long, Lin Ning, Heng Chen, Jian Huang
2022	A White Plaque, Associated with Genomic Deletion, Derived from M13KE-Based Peptide Library Is Enriched in a Target-Unrelated Manner during Phage Display Biopanning Due to Propagation Advantage International Journal of Molecular Sciences Danna Kamstrup Sell, Ane Beth Sloth, Babak Bakhshinejad, Andreas Kjaer
2021	CASPredict: a web service for identifying Cas proteins PeerJ Shanshan Yang, Jian Huang, Bifang He
2021	In vivo phage display: identification of organ-specific peptides using deep sequencing and differential profiling across tissues Nucleic Acids Research Karlis Pleiko, Kristina Põšnograjeva, Maarja Haugas, Päärn Paiste, Allan Tobi, Kaarel Kurm, Una Riekstina, Tambet Teesalu
2020	Application of Next Generation Sequencing (NGS) in Phage Displayed Peptide Selection to Support the Identification of Arsenic-Binding Motifs Viruses Robert Braun, Nora Schönberger, Svenja Vinke, Franziska Lederer, Jörn Kalinowski, Katrin Pollmann
2020	SSH: A Tool for Predicting Hydrophobic Interaction of Monoclonal Antibodies Using Sequences BioMed Research International Anthony Mackitz Dzisoo, Juanjuan Kang, Pengcheng Yao, Benjamin Klugah-Brown, Birga Anteneh Mengesha, Jian Huang
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