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2025	Risk of death during acute infection is accelerating across diverse host-pathogen systems and consistent with multiple models of host-pathogen interaction mSphere Tim O'Sullivan, Canan Karakoç, Kristofer Wollein Waldetoft, Sam P. Brown
2025	Quantifying the effects of antibiotic resistance and within-host competition on strain fitness in Streptococcus pneumoniae PLOS Biology Aswin Krishna, Gerry Tonkin-Hill, Thibaut Morel-Journel, Stephen Bentley, Paul Turner, François Blanquart, Sonja Lehtinen
2025	Integrating host condition into spatiotemporal multiscale models improves virus shedding predictions Ecography Andrew M. Kramer, Christina L. Faust, Adrian A. Castellanos, Ilya R. Fischhoff, Alison J. Peel, Peggy Eby, Manuel Ruiz‐Aravena, Benny Borremans, Raina K. Plowright, Barbara A. Han
2025	Attenuation of HIV severity by slightly deleterious mutations can explain the long-term trajectory of virulence evolution PLOS Computational Biology Harriet Longley, Christophe Fraser, Chris Wymant, Katrina Lythgoe
2025	Perceived risk induced multiscale model: Coupled within-host and between-host dynamics and behavioral dynamics Journal of Theoretical Biology Xiaodan Sun, Weike Zhou, Yuhua Ruan, Guanghua Lan, Qiuying Zhu, Yanni Xiao
2025	Host–Microbiome Interactions as Moderators of Host Quality and Biodiversity–Disease Relationships Integrative And Comparative Biology Kristen M Rosamond, Helen Joan Esser, Rebekka B Assink, Laura Jaramillo-Ortiz, Melissah Rowe, Ellie C Kirke, Kevin D Matson
2025	The contribution of community transmission to the burden of hospital-associated pathogens: A systematic scoping review of epidemiological models One Health Gary Lin, Suprena Poleon, Alisa Hamilton, Nalini Salvekar, Manuel Jara, Fardad Haghpanah, Cristina Lanzas, Ashley Hazel, Seth Blumberg, Suzanne Lenhart, Alun L. Lloyd, Anil Vullikanti, Eili Klein
2024	Quantifying the relationship between within-host dynamics and transmission for viral diseases of livestock Journal of The Royal Society Interface Simon Gubbins
2024	Trade-offs shaping transmission of sylvatic dengue and Zika viruses in monkey hosts Nature Communications Kathryn A. Hanley, Hélène Cecilia, Sasha R. Azar, Brett A. Moehn, Jordan T. Gass, Natalia I. Oliveira da Silva, Wanqin Yu, Ruimei Yun, Benjamin M. Althouse, Nikos Vasilakis, Shannan L. Rossi
2023	Correlation of viral loads in disease transmission could affect early estimates of the reproduction number Journal of The Royal Society Interface Thomas Harris, Nicholas Geard, Cameron Zachreson
2023	Multiscale data for parametrising multiscale models Physics of Life Reviews R. Eftimie
2023	An immuno-epidemiological model linking between-host and within-host dynamics of cholera Mathematical Biosciences and Engineering Beryl Musundi
2023	Analysis of the risk and pre-emptive control of viral outbreaks accounting for within-host dynamics: SARS-CoV-2 as a case study Proceedings of the National Academy of Sciences William S. Hart, Hyeongki Park, Yong Dam Jeong, Kwang Su Kim, Raiki Yoshimura, Robin N. Thompson, Shingo Iwami
2023	Mathematical methods for scaling from within-host to population-scale in infectious disease systems Epidemics James W.G. Doran, Robin N. Thompson, Christian A. Yates, Ruth Bowness
2022	A Multiscale Model of COVID-19 Dynamics Bulletin of Mathematical Biology Xueying Wang, Sunpeng Wang, Jin Wang, Libin Rong
2022	Evaluating efficacy of indoor non-pharmaceutical interventions against COVID-19 outbreaks with a coupled spatial-SIR agent-based simulation framework Scientific Reports Chathika Gunaratne, Rene Reyes, Erik Hemberg, Una-May O’Reilly
2022	The role of a programmatic immune response on the evolution of pathogen traits Journal of Theoretical Biology Sara L. Loo, Mark M. Tanaka
2022	2022 IEEE 61st Conference on Decision and Control (CDC) Esteban A. Hernandez-Vargas, Alejandro H. Gonzalez, Carolyn L. Beck, Xiaoqi Bi, Francesca Cala Campana, Giulia Giordano
2021	Mathematical modelling of Toxoplasma gondii transmission: A systematic review Food and Waterborne Parasitology Huifang Deng, Rachel Cummins, Gereon Schares, Chiara Trevisan, Heidi Enemark, Helga Waap, Jelena Srbljanovic, Olgica Djurkovic-Djakovic, Sara Monteiro Pires, Joke W.B. van der Giessen, Marieke Opsteegh
2021	Cross-scale dynamics and the evolutionary emergence of infectious diseases Virus Evolution Sebastian J Schreiber, Ruian Ke, Claude Loverdo, Miran Park, Prianna Ahsan, James O Lloyd-Smith
2021	The Use and Underuse of Model Systems in Infectious Disease Ecology and Evolutionary Biology The American Naturalist Nina Wale, Meghan A. Duffy
2020	A theoretical framework for transitioning from patient-level to population-scale epidemiological dynamics: influenza A as a case study Journal of The Royal Society Interface W. S. Hart, P. K. Maini, C. A. Yates, R. N. Thompson
2020	Disentangling the steps of the infection process responsible for juvenile disease susceptibility Functional Ecology Rony Izhar, Chen Gilboa, Frida Ben‐Ami
2020	The research and development process for multiscale models of infectious disease systems PLOS Computational Biology Winston Garira
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