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2025
Negativeome characterization and decontamination in early-life virome studies
Nature Communications
2025
Diverse ssRNA viruses associated with Karenia brevis harmful algal blooms in southwest Florida
mSphere
2025
Long oligos: direct chemical synthesis of genes with up to 1728 nucleotides
Chemical Science
2024
DeepCorr: a novel error correction method for 3GS long reads based on deep learning
PeerJ Computer Science
2024
Viral potential to modulate microbial methane metabolism varies by habitat
Nature Communications
2024
De Novo Synthesis of Error‐Free Long Oligos
Current Protocols
2024
Glacier-preserved Tibetan Plateau viral community probably linked to warm–cold climate variations
Nature Geoscience
2024
Nanopore and Illumina sequencing reveal different viral populations from human gut samples
Microbial Genomics
2023
Phage-microbe dynamics after sterile faecal filtrate transplantation in individuals with metabolic syndrome: a double-blind, randomised, placebo-controlled clinical trial assessing efficacy and safety
Nature Communications
2023
Deduplication Improves Cost-Efficiency and Yields of De Novo Assembly and Binning of Shotgun Metagenomes in Microbiome Research
Microbiology Spectrum
2022
The coral symbiont Candidatus Aquarickettsia is variably abundant in threatened Caribbean acroporids and transmitted horizontally
The ISME Journal
2022
Freshwater macrophytes harbor viruses representing all five major phyla of the RNA viral kingdom Orthornavirae
PeerJ
2022
Optimized Metavirome Analysis of Marine DNA Virus Communities for Taxonomic Profiling
Ocean Science Journal
2022
Unamplified, Long-Read Metagenomic Sequencing Approach to Close Endosymbiont Genomes of Low-Biomass Insect Populations
Microorganisms
2021
efam: an expanded, metaproteome-supported HMM profile database of viral protein families
Bioinformatics
2021
Minnesota peat viromes reveal terrestrial and aquatic niche partitioning for local and global viral populations
Microbiome
2021
Benchmarking microbial growth rate predictions from metagenomes
The ISME Journal
2021
Stability of the human gut virome and effect of gluten-free diet
Cell Reports
2021
Glacier ice archives nearly 15,000-year-old microbes and phages
Microbiome
2021
Comparison of PCR versus PCR-Free DNA Library Preparation for Characterising the Human Faecal Virome
Viruses
2021
Temporal Changes of Virus-Like Particle Abundance and Metagenomic Comparison of Viral Communities in Cropland and Prairie Soils
mSphere
2020
Characterization of viruses in a tapeworm: phylogenetic position, vertical transmission, and transmission to the parasitized host
The ISME Journal
2020
The IsoGenie database: an interdisciplinary data management solution for ecosystems biology and environmental research
PeerJ
2019
Benchmarking protocols for the metagenomic analysis of stream biofilm viromes
PeerJ
2019
Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils
PeerJ
2019
Studying the gut virome in the metagenomic era: challenges and perspectives
BMC Biology
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