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2025	Deciphering the proteome of Escherichia coli K-12: Integrating transcriptomics and machine learning to annotate hypothetical proteins Computational and Structural Biotechnology Journal Sagarika Chakraborty, Zachary Ardern, Habibu Aliyu, Anne-Kristin Kaster
2024	MEM‐FET: Essential protein prediction using membership feature and machine learning approach Proteins: Structure, Function, and Bioinformatics Anjan Kumar Payra, Banani Saha, Anupam Ghosh
2024	MSF-PFP: A Novel Multisource Feature Fusion Model for Protein Function Prediction Journal of Chemical Information and Modeling Xinhui Li, Yurong Qian, Yue Hu, Jiaying Chen, Haitao Yue, Lei Deng
2024	EPI-SF: essential protein identification in protein interaction networks using sequence features PeerJ Sovan Saha, Piyali Chatterjee, Subhadip Basu, Mita Nasipuri
2024	Research progress on the interaction of the polyphenol–protein–polysaccharide ternary systems Chemical and Biological Technologies in Agriculture Hongkun Xue, Junyao Feng, Yingqi Tang, Xuewu Wang, Jintian Tang, Xu Cai, Huaqiang Zhong
2023	A systematic review of state-of-the-art strategies for machine learning-based protein function prediction Computers in Biology and Medicine Tian-Ci Yan, Zi-Xuan Yue, Hong-Quan Xu, Yu-Hong Liu, Yan-Feng Hong, Gong-Xing Chen, Lin Tao, Tian Xie
2023	MM-CCNB: Essential protein prediction using MAX-MIN strategies and compartment of common neighboring approach Computer Methods and Programs in Biomedicine Anjan Kumar Payra, Banani Saha, Anupam Ghosh
2023	SERF, a family of tiny highly conserved, highly charged proteins with enigmatic functions The FEBS Journal Bikash R. Sahoo, James C. A. Bardwell
2023	Assessment of GO-Based Protein Interaction Affinities in the Large-Scale Human–Coronavirus Family Interactome Vaccines Soumyendu Sekhar Bandyopadhyay, Anup Kumar Halder, Sovan Saha, Piyali Chatterjee, Mita Nasipuri, Subhadip Basu
2022	Computational modeling of human-nCoV protein-protein interaction network Methods Sovan Saha, Anup Kumar Halder, Soumyendu Sekhar Bandyopadhyay, Piyali Chatterjee, Mita Nasipuri, Subhadip Basu
2022	Rule-Based Pruning and In Silico Identification of Essential Proteins in Yeast PPIN Cells Anik Banik, Souvik Podder, Sovan Saha, Piyali Chatterjee, Anup Kumar Halder, Mita Nasipuri, Subhadip Basu, Dariusz Plewczynski
2021	Detection of spreader nodes in human-SARS-CoV protein-protein interaction network PeerJ Sovan Saha, Piyali Chatterjee, Mita Nasipuri, Subhadip Basu
2020	2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Ruiquan Ge, Guanwen Feng, Pu Wang, Qiguang Miao
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