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2025
VITALdb: to select the best viroinformatics tools for a desired virus or application
Briefings in Bioinformatics
2024
Metagenomic Identification of Novel Eukaryotic Viruses with Small DNA Genomes in Pheasants
Animals
2024
Benchmarking informatics approaches for virus discovery: caution is needed when combining in silico identification methods
mSystems
2024
Tips and tools to obtain and assess mosquito viromes
Archives of Microbiology
2024
Blood virome research in myalgic encephalomyelitis/chronic fatigue syndrome: challenges and opportunities
Current Opinion in Virology
2023
Current trends inRNAvirus detection through metatranscriptome sequencing data
FEBS Open Bio
2023
Advances in the field of phage-based therapy with special emphasis on computational resources
Briefings in Bioinformatics
2023
Evaluation of computational phage detection tools for metagenomic datasets
Frontiers in Microbiology
2023
Gauge your phage: benchmarking of bacteriophage identification tools in metagenomic sequencing data
Microbiome
2023
Translational informatics for human microbiota: data resources, models and applications
Briefings in Bioinformatics
2023
Does the Human Gut Virome Contribute to Host Health or Disease?
Viruses
2022
The Microbiomes of Humans, Animals, Plants, and the Environment
2022
Development and Validation of a Bioinformatic Workflow for the Rapid Detection of Viruses in Biosecurity
Viruses
2022
Bacteria and viruses in urine in normal and pathology (urobiome and urovirome)
Nephrology (Saint-Petersburg)
2022
virMine 2.0: Identifying Viral Sequences in Microbial Communities
Microbiology Resource Announcements
2022
Ecological Studies
2022
Revolutionized virome research using systems microbiology approaches
Experimental Biology and Medicine
2022
2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)
2022
Optimized Metavirome Analysis of Marine DNA Virus Communities for Taxonomic Profiling
Ocean Science Journal
2022
Human Ocular Microbiome
2021
Lecture Notes in Electrical Engineering
2021
Simulation study and comparative evaluation of viral contiguous sequence identification tools
BMC Bioinformatics
2021
DeePhage: distinguishing virulent and temperate phage-derived sequences in metavirome data with a deep learning approach
GigaScience
2021
Studies in Computational Intelligence
2021
Urinary Tract Virome as an Urgent Target for Metagenomics
Life
2021
Predicting bacteriophage hosts based on sequences of annotated receptor-binding proteins
Scientific Reports
2021
Utilizing the VirIdAl Pipeline to Search for Viruses in the Metagenomic Data of Bat Samples
Viruses
2021
Challenges of Studying the Human Virome – Relevant Emerging Technologies
Trends in Microbiology
2020
Computational approaches in viral ecology
Computational and Structural Biotechnology Journal
2020
Experimental approaches to tracking mobile genetic elements in microbial communities
FEMS Microbiology Reviews
2020
Method development for cross-study microbiome data mining: Challenges and opportunities
Computational and Structural Biotechnology Journal
2020
Temporal Variability of Virioplankton during a Gymnodinium catenatum Algal Bloom
Microorganisms
2020
Virome Sequencing of the Human Intestinal Mucosal–Luminal Interface
Frontiers in Cellular and Infection Microbiology
2020
Novel NGS pipeline for virus discovery from a wide spectrum of hosts and sample types
Virus Evolution
2020
The Cancer Microbiome: Distinguishing Direct and Indirect Effects Requires a Systemic View
Trends in Cancer
2020
Metaviral SPAdes: assembly of viruses from metagenomic data
Bioinformatics
2020
Communications in Computer and Information Science
2019
Current and Promising Approaches to Identify Horizontal Gene Transfer Events in Metagenomes
Genome Biology and Evolution
2019
VFM: Identification of Bacteriophages From Metagenomic Bins and Contigs Based on Features Related to Gene and Genome Composition
IEEE Access
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