Citation sources

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2025
Ancient environmental microbiomes and the cryosphere
Trends in Microbiology
2025
Archaeological dental calculus: A rich bioarchive for exploring Classical Antiquity through ancient DNA methods
Journal of Archaeological Science: Reports
2025
Wet Lab Protocols Matter: Choice of DNA Extraction and Library Preparation Protocols Bias Ancient Oral Microbiome Recovery
Molecular Ecology Resources
2024
Methanobrevibacter oralis : a comprehensive review
Journal of Oral Microbiology
2024
Benchmarking bacterial taxonomic classification using nanopore metagenomics data of several mock communities
Scientific Data
2024
Benchmarking a targeted 16S ribosomal RNA gene enrichment approach to reconstruct ancient microbial communities
PeerJ
2024
2024
Filtering out the noise: metagenomic classifiers optimize ancient DNA mapping
Briefings in Bioinformatics
2024
Application and Comparison of Machine Learning and Database-Based Methods in Taxonomic Classification of High-Throughput Sequencing Data
Genome Biology and Evolution
2023
Microbially mediated fossil concretions and their characterization by the latest methodologies: a review
Frontiers in Microbiology
2023
Benchmarking Metagenomic Classifiers on Simulated Ancient and Modern Metagenomic Data
Microorganisms
2023
Handbook of Archaeological Sciences
2023
MT-MAG: Accurate and interpretable machine learning for complete or partial taxonomic assignments of metagenomeassembled genomes
PLOS ONE
2023
Using sedimentary prokaryotic communities to assess historical changes in the Gippsland Lakes
Freshwater Biology
2022
Smart Innovation, Systems and Technologies
2022
RETRACTED: Diagnosis of COVID-19 using 3D CT scans and vaccination for COVID-19
World Journal of Engineering
2022
Improvement of eukaryotic protein predictions from soil metagenomes
Scientific Data
2022
Benchmarking metagenomics classifiers on ancient viral DNA: a simulation study
PeerJ
2022
A Case Study for the Recovery of Authentic Microbial Ancient DNA from Soil Samples
Microorganisms
2021
Effectiveness of decontamination protocols when analyzing ancient DNA preserved in dental calculus
Scientific Reports
2021
Uncovering the genomic and metagenomic research potential in old ethanol-preserved snakes
PLOS ONE
2021
The evolutionary history of the human oral microbiota and its implications for modern health
Periodontology 2000
2021
Ancient Metagenomic Studies: Considerations for the Wider Scientific Community
mSystems
2021
Ancient DNA analysis
Nature Reviews Methods Primers
2020
Classification of COVID-19 and Other Pathogenic Sequences: A Dinucleotide Frequency and Machine Learning Approach
IEEE Access
2020
Investigating the demographic history of Japan using ancient oral microbiota
Philosophical Transactions of the Royal Society B: Biological Sciences
2020
Dental Calculus as a Tool to Study the Evolution of the Mammalian Oral Microbiome
Molecular Biology and Evolution
2019
Oral microbiome diversity in chimpanzees from Gombe National Park
Scientific Reports
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